Pregenerated sensors for MSL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031358Ensembl transcript IDs: ENSMUST00000033725.16, ENSMUST00000112137.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGCAAGGACCACCATGGTaGGCTCAGAAAATAATTCTT | + |
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Preference number: 2 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLQGPPW*AQKIIL Trigger: AAGAATTATTTTCTGAGCTCACCATGGTGGTCCTTG...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGAGCCACATAGTGCAGTaGTTTTTACAGAACCATCAA | + |
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Preference number: 3 (lower is better) Translates to: SLLAHTACVAVLLWNMFRSHIVQ*FLQNHQ Trigger: TTGATGGTTCTGTAAAAACAACTGCACTATGTGGCT...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| 3UTR-3UTR CAA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGTCCCTCAGAAATACTTaGAGAGTGCTTTGCGGCTTC | + |
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Preference number: 3 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLSLRNT*RVLCGF Trigger: GAAGCCGCAAAGCACTCTCAAAGTATTTCTGAGGGA...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| 3UTR CCA 72 bp | CATTTTTGTTTAACATTAACAAGTAATCAAACAGTATaGTCCTTGCTAACAACCACCTGCGCTGTCTACCAG | + |
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Preference number: 3 (lower is better) Translates to: HFCLTLTSNQTV*SLLTTTCAVYQ Trigger: CTGGTAGACAGCGCAGGTGGTTGTTAGCAAGGACCATACTGTTTGATTACTTGTTAATGTTAAACAAAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| 3UTR CCA 72 bp | TCTACCAGAATAATGTTTAACCTAAGTATACGTTCATaGACATATCCCTATGAAGACAGCTATGGCTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: STRIMFNLSIRS*TYPYEDSYGCF Trigger: AAAACAGCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACATTATTCTGGTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR TCA 90 bp | CTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCTGGGATGCCGGCGCTTCGGCTaGGGGGAGGAGCTGCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSEYPQDRSSISLTLHLGCRRFG*GEELLS Trigger: TGAGAGCAGCTCCTCCCCTCAGCCGAAGCGCCGGCA...TCCCAGGTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGGACCGCCTGAGAGACTaGAGTGCTTCTGGCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRDRLRD*SASGSA Trigger: AGCCGAGCCAGAAGCACTGCAGTCTCTCAGGCGGTC...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | CTGTTTCTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACGACCGCCTGAGAGACTaGAGTGCTTCTGGCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: LFLSEYPQDRSSISLTLHDRLRD*SASGSA Trigger: AGCCGAGCCAGAAGCACTGCAGTCTCTCAGGCGGTC...GTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAGAAACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | CTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCTGGGATGTGCGTGTGCATCATaGCATGATGGTGACGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LSEYPQDRSSISLTLHLGCACAS*HDGDEA Trigger: GGCCTCGTCACCATCATGCCATGATGCACACGCACA...TCCCAGGTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGCCTCTTGGGGGTGGCTaGTTCACCAGTAGGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRPLGGG*FTSRWL Trigger: CAGCCACCTACTGGTGAACCAGCCACCCCCAAGAGG...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | CTGTTTCTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCCTGAGAGACTGCAGTaGTTCTGGCTCGGCTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: LFLSEYPQDRSSISLTLHPERLQ*FWLGFA Trigger: CGCAAAGCCGAGCCAGAAGCACTGCAGTCTCTCAGG...GTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAGAAACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGGCCTGTCACAATTGGTaGTGTGCCTTGTGGACCGCC | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRACHNW*CALWTA Trigger: GGCGGTCCACAAGGCACAGCACCAATTGTGACAGGC...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGCCCTGGGGTTCTTGGTaGTGTAGTGTGCCTCACAGG | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRPWGSW*CSVPHR Trigger: CCTGTGAGGCACACTACAGCACCAAGAACCCCAGGG...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGTGTGCGTGTGCATCATaGCATGATGGTGACGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRCACAS*HDGDEA Trigger: GGCCTCGTCACCATCATGCCATGATGCACACGCACA...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | CTGTTTCTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACACAGCTTCGGCATGCTaGCAGATGTGTCCTGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: LFLSEYPQDRSSISLTLHTASAC*QMCPVA Trigger: GGCAACAGGACACATCTGCCAGCATGCCGAAGCTGT...GTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAGAAACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR TCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGTCTCCACAGCTCTCATaGCAGGTGCTGCTTACTGAG | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRSPQLS*QVLLTE Trigger: CTCAGTAAGCAGCACCTGTCATGAGAGCTGTGGAGA...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR TCA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGGCCTTGTGGACCGCCTaGGAGACTGCAGTGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLALWTA*ETAVLL Trigger: CAGAAGCACTGCAGTCTCTCAGGCGGTCCACAAGGC...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGGGAGACAGCTCTTCCTaGCTCCTATTAGTTGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRGDSSS*LLLVVV Trigger: CACGACAACTAATAGGAGCCAGGAAGAGCTGTCTCC...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGACTCCCATCCTTACTTaGAGTCAGAGGAATGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLLAHTACVAVLLWNMFRTPILT*SQRNGG Trigger: TCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGT...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR TCA 90 bp | CTGTTTCTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCCTCTAGCTGCTTCTTaGGAACATCGGGGATATCTA | + |
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Preference number: 4 (lower is better) Translates to: LFLSEYPQDRSSISLTLHPLAAS*EHRGYL Trigger: TAGATATCCCCGATGTTCTCAAGAAGCAGCTAGAGG...GTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAGAAACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCCCTGAGAGACTGCAGTaGTTCTGGCTCGGCTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGPERLQ*FWLGFA Trigger: CGCAAAGCCGAGCCAGAAGCACTGCAGTCTCTCAGG...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCCCCTGGGGTTCTTGGTaGTGTAGTGTGCCTCACAGG | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGPWGSW*CSVPHR Trigger: CCTGTGAGGCACACTACAGCACCAAGAACCCCAGGG...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGACAGCTTCGGCATGCTaGCAGATGTGTCCTGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLTASAC*QMCPVA Trigger: GGCAACAGGACACATCTGCCAGCATGCCGAAGCTGT...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGCCGGAGCAAATGCTGTaGACCATAAATGTACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLPEQML*TINVRR Trigger: CCTTCGTACATTTATGGTGCACAGCATTTGCTCCGG...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCGGAGACAGCTCTTCCTaGCTCCTATTAGTTGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGGDSSS*LLLVVV Trigger: CACGACAACTAATAGGAGCCAGGAAGAGCTGTCTCC...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCACTCCCATCCTTACTTaGAGTCAGAGGAATGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGTPILT*SQRNGG Trigger: TCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGT...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCCCTCTAGCTGCTTCTTaGGAACATCGGGGATATCTA | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGPLAAS*EHRGYL Trigger: TAGATATCCCCGATGTTCTCAAGAAGCAGCTAGAGG...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR GCA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCCCGGAGCAAATGCTGTaGACCATAAATGTACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGPEQML*TINVRR Trigger: CCTTCGTACATTTATGGTGCACAGCATTTGCTCCGG...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CAA 90 bp | AGCCTGCTAGCACACACAGCTTGTGTAGCAGTGTTACTTTGGAATATGTTCAGGTACAGCACTCGCGCCTaGGTAGGGTCAGGCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SLLAHTACVAVLLWNMFRYSTRA*VGSGSK Trigger: CTTCGAGCCTGACCCTACCAAGGCGCGAGTGCTGTA...CCTGAACATATTCCAAAGTAACACTGCTACACAAGCTGTGTGTGCTAGCAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033725.16 |
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| CDS-3UTR CAA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGGCTTCTGGCTCGGCTTaGCGCCTCTTGGGGGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLASGSA*RLLGVA Trigger: AGCCACCCCCAAGAGGCGCAAAGCCGAGCCAGAAGC...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CAA 90 bp | CTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCTGGGACTCCCCAGAGTGGAATaGAAATTTCATGCCCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LSEYPQDRSSISLTLHLGLPRVE*KFHALA Trigger: AGCGAGGGCATGAAATTTCAATTCCACTCTGGGGAG...TCCCAGGTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033725.16 |
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| CDS-3UTR CAA 90 bp | ATGTTTAACCTAAGTATACGTTCATGGACATATCCCTATGAAGACAGCTATGGCGCTTCTGGCTCGGCTTaGCGCCTCTTGGGGGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: MFNLSIRSWTYPYEDSYGASGSA*RLLGVA Trigger: AGCCACCCCCAAGAGGCGCAAAGCCGAGCCAGAAGC...GCCATAGCTGTCTTCATAGGGATATGTCCATGAACGTATACTTAGGTTAAACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTCTGTCAGAGTACCCCCAGGATAGGTCTAGCATCTCATTAACACTTCACCATCCATTTCCTTTCTaGAACGCAGCGACAATACCT | + |
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Preference number: 5 (lower is better) Translates to: LFLSEYPQDRSSISLTLHHPFPF*NAATIP Trigger: AGGTATTGTCGCTGCGTTCAAGAAAGGAAATGGATG...GTGAAGTGTTAATGAGATGCTAGACCTATCCTGGGGGTACTCTGACAGAAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS-3UTR CAA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGATAACATCGATGATCTaGGCATCGTACAGCACTCGC | + |
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Preference number: 5 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLITSMI*ASYSTR Trigger: GCGAGTGCTGTACGATGCCAAGATCATCGATGTTAT...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033725.16 |
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| CDS-3UTR CAA 90 bp | GTTTCTGAGAAAGGGAACTGCTACAAGCAATGCATAGCTGTAAGTTCTCTTTTGCATCCATTTCCTTTCTaGAACGCAGCGACAATACCT | + |
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Preference number: 5 (lower is better) Translates to: VSEKGNCYKQCIAVSSLLHPFPF*NAATIP Trigger: AGGTATTGTCGCTGCGTTCAAGAAAGGAAATGGATG...CAAAAGAGAACTTACAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033725.16 ENSMUST00000112137.2 |
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| CDS CAA 72 bp | ACATCGATGATCTTGGCATCGTACAGCACTCGCGCCTaGGTAGGGTCAGGCTCGAAGCACAGCACTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TSMILASYSTRA*VGSGSKHSTFS Trigger: GGAGAAAGTGCTGTGCTTCGAGCCTGACCCTACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033725.16 |
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| CDS CAA 90 bp | CCGATAATAACATCGATGATCTTGGCATCGTACAGCACTCGCGCCTaGGTAGGGTCAGGCTCGAAGCACAGCACTTTCTCCCCAGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: PIITSMILASYSTRA*VGSGSKHSTFSPEW Trigger: CCACTCTGGGGAGAAAGTGCTGTGCTTCGAGCCTGACCCTACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGTTATTATCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033725.16 |
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