Pregenerated sensors for MSH4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005493Ensembl transcript IDs: ENSMUST00000005630.11, ENSMUST00000188338.7, ENSMUST00000190449.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATGATGAACCTGGCGCGGACGCCGGCGCCGGACTGCTGCTGCTGCTaGTGCTCCTGTCGGCCATGGCGCCTTCCGTACTCGGCCTGGACG | + |
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Preference number: 5 (lower is better) Translates to: MMNLARTPAPDCCCC*CSCRPWRLPYSAWT Trigger: CGTCCAGGCCGAGTACGGAAGGCGCCATGGCCGACAGGAGCAGCAGCAGCAGCAGCAGTCCGGCGCCGGCGTCCGCGCCAGGTTCATCAT 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS GCA 90 bp | CAAATGATGAACCTGGCGCGGACGCCGGCGCCGGACTGCTGCTGCTaGTGCTGCTCCTGTCGGCCATGGCGCCTTCCGTACTCGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QMMNLARTPAPDCCC*CCSCRPWRLPYSAW Trigger: CCAGGCCGAGTACGGAAGGCGCCATGGCCGACAGGAGCAGCAGCAGCAGCAGCAGTCCGGCGCCGGCGTCCGCGCCAGGTTCATCATTTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS CCA 90 bp | CAGGGTCCTCCCGCATGGGGCATCCCTCCGCGACGGCGTCCAGCGTaGGGAACTGGAAAGCGATGCAGCCTCCTGCCTCAGCATCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: QGPPAWGIPPRRRPA*GTGKRCSLLPQHLS Trigger: GGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGACGCCGTCGCGGAGGGATGCCCCATGCGGGAGGACCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS CCA 90 bp | TCCCGCATGGGGCATCCCTCCGCGACGGCGTCCAGCGTGGGGAACTaGAAAGCGATGCAGCCTCCTGCCTCAGCATCTCTCCGGCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SRMGHPSATASSVGN*KAMQPPASASLRPF Trigger: GAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGACGCCGTCGCGGAGGGATGCCCCATGCGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS GCA 90 bp | GGCATCCCTCCGCGACGGCGTCCAGCGTGGGGAACTGGAAAGCGATaGAGCCTCCTGCCTCAGCATCTCTCCGGCCTTTCTGACTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: GIPPRRRPAWGTGKR*SLLPQHLSGLSDSQ Trigger: TTGGGAGTCAGAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGACGCCGTCGCGGAGGGATGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS TCA 90 bp | TGGAAAGCGATGCAGCCTCCTGCCTCAGCATCTCTCCGGCCTTTCTaGCTCCCAAGGTTCTGCGCGCGTGGCTTCGAGCACTCCAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: WKAMQPPASASLRPF*LPRFCARGFEHSKA Trigger: AGCCTTGGAGTGCTCGAAGCCACGCGCGCAGAACCTTGGGAGTCAGAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS TCA 90 bp | GCTCCTCGTCCTGCAGCAGCTCCTGGACACAGTCCAGCCGCATGCTaGTCGTCTCCACATCAACCAGAGGCTCCAGGATGTTGGAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: APRPAAAPGHSPAAC*SSPHQPEAPGCWSA Trigger: TGCGCTCCAACATCCTGGAGCCTCTGGTTGATGTGGAGACGATCAGCATGCGGCTGGACTGTGTCCAGGAGCTGCTGCAGGACGAGGAGC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 90 bp | TGTCTGGCTCCAACTGAGAGTTTCGGGCGGCCTGGACAAGCCTTGTaGCAAGATGGTACACAGCTCTCTGTCTATCCATCTCAGGGGAAC | + |
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Preference number: 5 (lower is better) Translates to: CLAPTESFGRPGQAL*QDGTQLSVYPSQGN Trigger: GTTCCCCTGAGATGGATAGACAGAGAGCTGTGTACCATCTTGCCACAAGGCTTGTCCAGGCCGCCCGAAACTCTCAGTTGGAGCCAGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | TTCTTGAGGTTACTCAGGTATGTCCGTAACCTGTCTGGCTCCAACTaGGAGTTTCGGGCGGCCTGGACAAGCCTTGTGGCAAGATGGTAC | + |
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Preference number: 5 (lower is better) Translates to: FLRLLRYVRNLSGSN*EFRAAWTSLVARWY Trigger: GTACCATCTTGCCACAAGGCTTGTCCAGGCCGCCCGAAACTCTCAGTTGGAGCCAGACAGGTTACGGACATACCTGAGTAACCTCAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | CTGGAAGGCCCACAGCCCTGGGAAAGTCCCCTGCATATTTCTTCTTaGGGTTACTCAGGTATGTCCGTAACCTGTCTGGCTCCAACTGAG | + |
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Preference number: 5 (lower is better) Translates to: LEGPQPWESPLHISS*GYSGMSVTCLAPTE Trigger: CTCAGTTGGAGCCAGACAGGTTACGGACATACCTGAGTAACCTCAAGAAGAAATATGCAGGGGACTTTCCCAGGGCTGTGGGCCTTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 90 bp | TGTCCTCCTGGCTATGTCCAGGAACTCACTGATGTTAGAGCGCACTaGATAGCACTTCTGAGTCCGCATGTTCAGGCAGCCCTTCATGTA | + |
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Preference number: 5 (lower is better) Translates to: CPPGYVQELTDVRAH*IALLSPHVQAALHV Trigger: TACATGAAGGGCTGCCTGAACATGCGGACTCAGAAGTGCTATGCAGTGCGCTCTAACATCAGTGAGTTCCTGGACATAGCCAGGAGGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 90 bp | GCTCCAGGATGTTGGAGCGCAGCCTTCGGCTCCCTCCCGCAGTCTTaGTGTAATTTAAAACACCGAAGAGAGTGTGATTACTCCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: APGCWSAAFGSLPQS*CNLKHRRECDYSCS Trigger: ACTACAGGAGTAATCACACTCTCTTCGGTGTTTTAAATTACACCAAGACTGCGGGAGGGAGCCGAAGGCTGCGCTCCAACATCCTGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 90 bp | ACAGAAAGCAGCTGCTCCGTATCCAGGAATCTTGATATGACTGACTaGAGTCCAAAGAAGAGCTCCTCGTCCTGCAGCAGCTCCTGGACA | + |
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Preference number: 5 (lower is better) Translates to: TESSCSVSRNLDMTD*SPKKSSSSCSSSWT Trigger: TGTCCAGGAGCTGCTGCAGGACGAGGAGCTCTTCTTTGGACTCCAGTCAGTCATATCAAGATTCCTGGATACGGAGCAGCTGCTTTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 90 bp | CAGAAAGAGTACAGGCATGCGCAAACGACAGCAGCATATCCAGCATaGACACCGTGTCAGAGAGCTTGTACAAGCAGTGGATGTGCTCGT | + |
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Preference number: 5 (lower is better) Translates to: QKEYRHAQTTAAYPA*TPCQRACTSSGCAR Trigger: ACGAGCACATCCACTGCTTGTACAAGCTCTCTGACACGGTGTCCATGCTGGATATGCTGCTGTCGTTTGCGCATGCCTGTACTCTTTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | GAACTAAAACAGAAAGCAGCTGCTCCGTATCCAGGAATCTTGATATaGCTGACTGGAGTCCAAAGAAGAGCTCCTCGTCCTGCAGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: ELKQKAAAPYPGILI*LTGVQRRAPRPAAA Trigger: AGCTGCTGCAGGACGAGGAGCTCTTCTTTGGACTCCAGTCAGTCATATCAAGATTCCTGGATACGGAGCAGCTGCTTTCTGTTTTAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | CTGCAAGGCAGTAATACCTGGACTGCACCTCCATTAGCACAGAACTaGACTCAGCTATGCACAACTGCTCAATGTACTCTAAGCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: LQGSNTWTAPPLAQN*TQLCTTAQCTLSPL Trigger: CAAAGGGCTTAGAGTACATTGAGCAGTTGTGCATAGCTGAGTTCAGTTCTGTGCTAATGGAGGTGCAGTCCAGGTATTACTGCCTTGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | CGGAGTTCTAAATGTATGTGGGTAAGTGGTATCTCGTGCAGAAGATaGGCTTGTACCAACAGGAAAACTGGATGCAGCTCTGTGTATAGC | + |
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Preference number: 5 (lower is better) Translates to: RSSKCMWVSGISCRR*ACTNRKTGCSSVYS Trigger: GCTATACACAGAGCTGCATCCAGTTTTCCTGTTGGTACAAGCTCATCTTCTGCACGAGATACCACTTACCCACATACATTTAGAACTCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS GCA 90 bp | GCAGAGGATGTGGCTGAATATCCTACTTGTGGTGTCCAACTTTTATaGCCTGATCTCTGGGGATTTCCAGCAGATAACGGAGTTCTAAAT | + |
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Preference number: 5 (lower is better) Translates to: AEDVAEYPTCGVQLL*PDLWGFPADNGVLN Trigger: ATTTAGAACTCCGTTATCTGCTGGAAATCCCCAGAGATCAGGGCATAAAAGTTGGACACCACAAGTAGGATATTCAGCCACATCCTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS TCA 90 bp | TGTCAGAGAGCTTGTACAAGCAGTGGATGTGCTCGTAGATCTCACTaGGCAGTTTGCACACTATCATGTAGGTCATGTGATAGATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: CQRACTSSGCARRSH*AVCTLSCRSCDRFL Trigger: GAGAAATCTATCACATGACCTACATGATAGTGTGCAAACTGCTCAGTGAGATCTACGAGCACATCCACTGCTTGTACAAGCTCTCTGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 90 bp | GACTGCACCTCCATTAGCACAGAACTGAACTCAGCTATGCACAACTaGTCAATGTACTCTAAGCCCTTTGTTTCGTTGAAGTATTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: DCTSISTELNSAMHN*SMYSKPFVSLKYFL Trigger: AAGGAAATACTTCAACGAAACAAAGGGCTTAGAGTACATTGAGCAGTTGTGCATAGCTGAGTTCAGTTCTGTGCTAATGGAGGTGCAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 90 bp | GTTTGTTTCAATATCATCATCAGTACTGATTCTCGTAAAGATCTGTaGAGCAATCCTAAAGGAGGCGTATTCTGCTGGGACATAGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: VCFNIIISTDSRKDL*SNPKGGVFCWDIGA Trigger: GGCTCCTATGTCCCAGCAGAATACGCCTCCTTTAGGATTGCTGCACAGATCTTTACGAGAATCAGTACTGATGATGATATTGAAACAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | GTTATCTTTGATTCAGCTGCGTTAACCGTGTCTTGCTTTGGGATTTaGACTAAAACAGAAAGCAGCTGCTCCGTATCCAGGAATCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: VIFDSAALTVSCFGI*TKTESSCSVSRNLD Trigger: ATCAAGATTCCTGGATACGGAGCAGCTGCTTTCTGTTTTAGTTCAAATCCCAAAGCAAGACACGGTTAACGCAGCTGAATCAAAGATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 90 bp | GGAAATAAATCTTTAGCGATTTGGGTGCATACACTGAATTCTGAATaGATTCGACATACTTTAATAAAGCTGCAGCAGCTGCAAGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: GNKSLAIWVHTLNSE*IRHTLIKLQQLQGS Trigger: ACTGCCTTGCAGCTGCTGCAGCTTTATTAAAGTATGTCGAATTCATTCAGAATTCAGTGTATGCACCCAAATCGCTAAAGATTTATTTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 72 bp | CTGGCGCGGACGCCGGCGCCGGACTGCTGCTGCTGCTaGTGCTCCTGTCGGCCATGGCGCCTTCCGTACTCG | + |
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Preference number: 6 (lower is better) Translates to: LARTPAPDCCCC*CSCRPWRLPYS Trigger: CGAGTACGGAAGGCGCCATGGCCGACAGGAGCAGCAGCAGCAGCAGCAGTCCGGCGCCGGCGTCCGCGCCAG 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS GCA 72 bp | ATGAACCTGGCGCGGACGCCGGCGCCGGACTGCTGCTaGTGCTGCTGCTCCTGTCGGCCATGGCGCCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: MNLARTPAPDCC*CCCSCRPWRLP Trigger: CGGAAGGCGCCATGGCCGACAGGAGCAGCAGCAGCAGCAGCAGTCCGGCGCCGGCGTCCGCGCCAGGTTCAT 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS TCA 72 bp | TGGCTTCGAGCACTCCAAGGCTGGAGGCCGCACCGCTaGCAAGGCGGGAGGCTAAGCGCATGCGCAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: WLRALQGWRPHR*QGGRLSACAVL Trigger: CAGCACTGCGCATGCGCTTAGCCTCCCGCCTTGTCAGCGGTGCGGCCTCCAGCCTTGGAGTGCTCGAAGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS CCA 72 bp | TCTCCGGCCTTTCTGACTCCCAAGGTTCTGCGCGCGTaGCTTCGAGCACTCCAAGGCTGGAGGCCGCACCGC | + |
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Preference number: 6 (lower is better) Translates to: SPAFLTPKVLRA*LRALQGWRPHR Trigger: GCGGTGCGGCCTCCAGCCTTGGAGTGCTCGAAGCCACGCGCGCAGAACCTTGGGAGTCAGAAAGGCCGGAGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS CCA 72 bp | GGGCATCCCTCCGCGACGGCGTCCAGCGTGGGGAACTaGAAAGCGATGCAGCCTCCTGCCTCAGCATCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GHPSATASSVGN*KAMQPPASASL Trigger: GAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGACGCCGTCGCGGAGGGATGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS GCA 72 bp | CCGCGACGGCGTCCAGCGTGGGGAACTGGAAAGCGATaGAGCCTCCTGCCTCAGCATCTCTCCGGCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PRRRPAWGTGKR*SLLPQHLSGLS Trigger: AGAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGACGCCGTCGCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS TCA 72 bp | ATGCAGCCTCCTGCCTCAGCATCTCTCCGGCCTTTCTaGCTCCCAAGGTTCTGCGCGCGTGGCTTCGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: MQPPASASLRPF*LPRFCARGFEH Trigger: GTGCTCGAAGCCACGCGCGCAGAACCTTGGGAGTCAGAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS TCA 72 bp | CTCTGGCCAGCCCTCTTCCTTCCACCACCGCTACAATaGCTGATGGGGCGTGTGCAGACACCGCAGAGGATG | + |
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Preference number: 6 (lower is better) Translates to: LWPALFLPPPLQ*LMGRVQTPQRM Trigger: CATCCTCTGCGGTGTCTGCACACGCCCCATCAGTCATTGTAGCGGTGGTGGAAGGAAGAGGGCTGGCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS GCA 72 bp | GTCCAGCGTGGGGAACTGGAAAGCGATGCAGCCTCCTaGCTCAGCATCTCTCCGGCCTTTCTGACTCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: VQRGELESDAAS*LSISPAFLTPK Trigger: CTTGGGAGTCAGAAAGGCCGGAGAGATGCTGAGGCAGGAGGCTGCATCGCTTTCCAGTTCCCCACGCTGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005630.11 |
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| CDS CAA 72 bp | CTGATCGTCTCCACATCAACCAGAGGCTCCAGGATGTaGGAGCGCAGCCTTCGGCTCCCTCCCGCAGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LIVSTSTRGSRM*ERSLRLPPAVL Trigger: CAAGACTGCGGGAGGGAGCCGAAGGCTGCGCTCCAACATCCTGGAGCCTCTGGTTGATGTGGAGACGATCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | CCTGCAGCAGCTCCTGGACACAGTCCAGCCGCATGCTaGTCGTCTCCACATCAACCAGAGGCTCCAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: PAAAPGHSPAAC*SSPHQPEAPGC Trigger: ACATCCTGGAGCCTCTGGTTGATGTGGAGACGATCAGCATGCGGCTGGACTGTGTCCAGGAGCTGCTGCAGG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | AGTCCAAAGAAGAGCTCCTCGTCCTGCAGCAGCTCCTaGACACAGTCCAGCCGCATGCTGATCGTCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SPKKSSSSCSSS*TQSSRMLIVST Trigger: TGTGGAGACGATCAGCATGCGGCTGGACTGTGTCCAGGAGCTGCTGCAGGACGAGGAGCTCTTCTTTGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CAA 90 bp | ACCTGTCTGGCTCCAACTGAGAGTTTCGGGCGGCCTGGACAAGCCTaGTGGCAAGATGGTACACAGCTCTCTGTCTATCCATCTCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: TCLAPTESFGRPGQA*WQDGTQLSVYPSQG Trigger: CCCCTGAGATGGATAGACAGAGAGCTGTGTACCATCTTGCCACAAGGCTTGTCCAGGCCGCCCGAAACTCTCAGTTGGAGCCAGACAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CAA 72 bp | GCTCCAACTGAGAGTTTCGGGCGGCCTGGACAAGCCTaGTGGCAAGATGGTACACAGCTCTCTGTCTATCCA | + |
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Preference number: 6 (lower is better) Translates to: APTESFGRPGQA*WQDGTQLSVYP Trigger: TGGATAGACAGAGAGCTGTGTACCATCTTGCCACAAGGCTTGTCCAGGCCGCCCGAAACTCTCAGTTGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | CCAACTGAGAGTTTCGGGCGGCCTGGACAAGCCTTGTaGCAAGATGGTACACAGCTCTCTGTCTATCCATCT | + |
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Preference number: 6 (lower is better) Translates to: PTESFGRPGQAL*QDGTQLSVYPS Trigger: AGATGGATAGACAGAGAGCTGTGTACCATCTTGCCACAAGGCTTGTCCAGGCCGCCCGAAACTCTCAGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | AGCTGCTCCGTATCCAGGAATCTTGATATGACTGACTaGAGTCCAAAGAAGAGCTCCTCGTCCTGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SCSVSRNLDMTD*SPKKSSSSCSS Trigger: GCTGCTGCAGGACGAGGAGCTCTTCTTTGGACTCCAGTCAGTCATATCAAGATTCCTGGATACGGAGCAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | TACAGGCATGCGCAAACGACAGCAGCATATCCAGCATaGACACCGTGTCAGAGAGCTTGTACAAGCAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: YRHAQTTAAYPA*TPCQRACTSSG Trigger: TCCACTGCTTGTACAAGCTCTCTGACACGGTGTCCATGCTGGATATGCTGCTGTCGTTTGCGCATGCCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | GATCTGTGCAGCAATCCTAAAGGAGGCGTATTCTGCTaGGACATAGGAGCCGATCTGGGCCATGATCTGACA | + |
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Preference number: 6 (lower is better) Translates to: DLCSNPKGGVFC*DIGADLGHDLT Trigger: TGTCAGATCATGGCCCAGATCGGCTCCTATGTCCCAGCAGAATACGCCTCCTTTAGGATTGCTGCACAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CAA 72 bp | CCCACAGCCCTGGGAAAGTCCCCTGCATATTTCTTCTaGAGGTTACTCAGGTATGTCCGTAACCTGTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: PTALGKSPAYFF*RLLRYVRNLSG Trigger: GCCAGACAGGTTACGGACATACCTGAGTAACCTCAAGAAGAAATATGCAGGGGACTTTCCCAGGGCTGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | CCACAGCCCTGGGAAAGTCCCCTGCATATTTCTTCTTaGGGTTACTCAGGTATGTCCGTAACCTGTCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: PQPWESPLHISS*GYSGMSVTCLA Trigger: AGCCAGACAGGTTACGGACATACCTGAGTAACCTCAAGAAGAAATATGCAGGGGACTTTCCCAGGGCTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 72 bp | AAAGATCTGTGCAGCAATCCTAAAGGAGGCGTATTCTaGTGGGACATAGGAGCCGATCTGGGCCATGATCTG | + |
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Preference number: 6 (lower is better) Translates to: KDLCSNPKGGVF*WDIGADLGHDL Trigger: CAGATCATGGCCCAGATCGGCTCCTATGTCCCAGCAGAATACGCCTCCTTTAGGATTGCTGCACAGATCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | CAGAAAGCAGCTGCTCCGTATCCAGGAATCTTGATATaGCTGACTGGAGTCCAAAGAAGAGCTCCTCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: QKAAAPYPGILI*LTGVQRRAPRP Trigger: AGGACGAGGAGCTCTTCTTTGGACTCCAGTCAGTCATATCAAGATTCCTGGATACGGAGCAGCTGCTTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | GATTCAGCTGCGTTAACCGTGTCTTGCTTTGGGATTTaGACTAAAACAGAAAGCAGCTGCTCCGTATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: DSAALTVSCFGI*TKTESSCSVSR Trigger: CCTGGATACGGAGCAGCTGCTTTCTGTTTTAGTTCAAATCCCAAAGCAAGACACGGTTAACGCAGCTGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 72 bp | GTGGCTGAATATCCTACTTGTGGTGTCCAACTTTTATaGCCTGATCTCTGGGGATTTCCAGCAGATAACGGA | + |
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Preference number: 6 (lower is better) Translates to: VAEYPTCGVQLL*PDLWGFPADNG Trigger: TCCGTTATCTGCTGGAAATCCCCAGAGATCAGGGCATAAAAGTTGGACACCACAAGTAGGATATTCAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS GCA 72 bp | AAGACTGTACTTCTCTGCGAGCTGTGCTATCATTCCTaGTATGTCGTCCACTATCTCTGTGTATGTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: KTVLLCELCYHS*YVVHYLCVCPP Trigger: AGGAGGACATACACAGAGATAGTGGACGACATAGCAGGAATGATAGCACAGCTCGCAGAGAAGTACAGTCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | GCTTGTACAAGCAGTGGATGTGCTCGTAGATCTCACTaGGCAGTTTGCACACTATCATGTAGGTCATGTGAT | + |
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Preference number: 6 (lower is better) Translates to: ACTSSGCARRSH*AVCTLSCRSCD Trigger: ATCACATGACCTACATGATAGTGTGCAAACTGCTCAGTGAGATCTACGAGCACATCCACTGCTTGTACAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | TTCACTTTAGAAATCTTAATAAACTCCGAAGGAAGCTaGTCACTGGAGAGTGCAGCGCAGTCTGTGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: FTLEILINSEGS*SLESAAQSVVI Trigger: GATGACCACAGACTGCGCTGCACTCTCCAGTGACCAGCTTCCTTCGGAGTTTATTAAGATTTCTAAAGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | AAATGTATGTGGGTAAGTGGTATCTCGTGCAGAAGATaGGCTTGTACCAACAGGAAAACTGGATGCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KCMWVSGISCRR*ACTNRKTGCSS Trigger: AGAGCTGCATCCAGTTTTCCTGTTGGTACAAGCTCATCTTCTGCACGAGATACCACTTACCCACATACATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS CCA 72 bp | CCTACTTGTGGTGTCCAACTTTTATGCCCTGATCTCTaGGGATTTCCAGCAGATAACGGAGTTCTAAATGTA | + |
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Preference number: 6 (lower is better) Translates to: PTCGVQLLCPDL*GFPADNGVLNV Trigger: TACATTTAGAACTCCGTTATCTGCTGGAAATCCCCAGAGATCAGGGCATAAAAGTTGGACACCACAAGTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 |
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| CDS GCA 72 bp | TCCATTAGCACAGAACTGAACTCAGCTATGCACAACTaGTCAATGTACTCTAAGCCCTTTGTTTCGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SISTELNSAMHN*SMYSKPFVSLK Trigger: CTTCAACGAAACAAAGGGCTTAGAGTACATTGAGCAGTTGTGCATAGCTGAGTTCAGTTCTGTGCTAATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS GCA 72 bp | AATATCATCATCAGTACTGATTCTCGTAAAGATCTGTaGAGCAATCCTAAAGGAGGCGTATTCTGCTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: NIIISTDSRKDL*SNPKGGVFCWD Trigger: GTCCCAGCAGAATACGCCTCCTTTAGGATTGCTGCACAGATCTTTACGAGAATCAGTACTGATGATGATATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CCA 72 bp | ACAACTCCAGGTTTTGGGCCGATGATGAATCTATCATaGCTGTCTGCTCACTACCTTGGAAATAAATCTTTA | + |
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Preference number: 6 (lower is better) Translates to: TTPGFGPMMNLS*LSAHYLGNKSL Trigger: TAAAGATTTATTTCCAAGGTAGTGAGCAGACAGCCATGATAGATTCATCATCGGCCCAAAACCTGGAGTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS TCA 72 bp | TCTTTAGCGATTTGGGTGCATACACTGAATTCTGAATaGATTCGACATACTTTAATAAAGCTGCAGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLAIWVHTLNSE*IRHTLIKLQQL Trigger: CAGCTGCTGCAGCTTTATTAAAGTATGTCGAATTCATTCAGAATTCAGTGTATGCACCCAAATCGCTAAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CAA 72 bp | GTGCCTCTGCCAAGCTCGTCAATTAATATGAGTGACTaGTCATTAGCATTATGGAGAATATATGCTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: VPLPSSSINMSD*SLALWRIYAIS Trigger: AGAGATAGCATATATTCTCCATAATGCTAATGACAAGTCACTCATATTAATTGACGAGCTTGGCAGAGGCAC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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| CDS CAA 90 bp | TCTGTATTAGTGCCTCTGCCAAGCTCGTCAATTAATATGAGTGACTaGTCATTAGCATTATGGAGAATATATGCTATCTCTTTCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: SVLVPLPSSSINMSD*SLALWRIYAISFIS Trigger: AGAAATGAAAGAGATAGCATATATTCTCCATAATGCTAATGACAAGTCACTCATATTAATTGACGAGCTTGGCAGAGGCACTAATACAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005630.11 ENSMUST00000188338.7 ENSMUST00000190449.2 |
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