Pregenerated sensors for MSGN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047002Ensembl transcript IDs: ENSMUST00000049877.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGAGAGGCTTTGAGTGGGGGACTCCTGGACCAGCTCCAAGGGCCTaGCTCTGCTTTTCCAGTCCCAGGAGGCCAGCAGACCAGCGGTGT | + |
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Preference number: 5 (lower is better) Translates to: GRGFEWGTPGPAPRA*LCFSSPRRPADQRC Trigger: ACACCGCTGGTCTGCTGGCCTCCTGGGACTGGAAAAGCAGAGCCAGGCCCTTGGAGCTGGTCCAGGAGTCCCCCACTCAAAGCCTCTCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS TCA 90 bp | GGTAATTCCGGAGCGTGTGGAGGGCATCGGCTAAGGTCCGCATCCTaGGTTTCTCTCTCTCGCTGGCCTTCCGTCTCCGCTGGACAGACA | + |
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Preference number: 5 (lower is better) Translates to: GNSGACGGHRLRSAS*VSLSRWPSVSAGQT Trigger: TGTCTGTCCAGCGGAGACGGAAGGCCAGCGAGAGAGAGAAACTCAGGATGCGGACCTTAGCCGATGCCCTCCACACGCTCCGGAATTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CCA 90 bp | GTCCGCATCCTGAGTTTCTCTCTCTCGCTGGCCTTCCGTCTCCGCTaGACAGACATCTTGACTTTGCTGCCTTTCTGGCCTTTGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VRILSFSLSLAFRLR*TDILTLLPFWPLRP Trigger: TGGCCTCAAAGGCCAGAAAGGCAGCAAAGTCAAGATGTCTGTCCAGCGGAGACGGAAGGCCAGCGAGAGAGAGAAACTCAGGATGCGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CCA 72 bp | AGGACTCCAGAGAAGGAGCTGGGGAGAGGCTTTGAGTaGGGGACTCCTGGACCAGCTCCAAGGGCCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RTPEKELGRGFE*GTPGPAPRAWL Trigger: GAGCCAGGCCCTTGGAGCTGGTCCAGGAGTCCCCCACTCAAAGCCTCTCCCCAGCTCCTTCTCTGGAGTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 90 bp | TGCGACCTCAGAGTAGGACTCCAGAGAAGGAGCTGGGGAGAGGCTTaGAGTGGGGGACTCCTGGACCAGCTCCAAGGGCCTGGCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: CDLRVGLQRRSWGEA*SGGLLDQLQGPGSA Trigger: AGCAGAGCCAGGCCCTTGGAGCTGGTCCAGGAGTCCCCCACTCAAAGCCTCTCCCCAGCTCCTTCTCTGGAGTCCTACTCTGAGGTCGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS TCA 72 bp | GGAGCGTGTGGAGGGCATCGGCTAAGGTCCGCATCCTaGGTTTCTCTCTCTCGCTGGCCTTCCGTCTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GACGGHRLRSAS*VSLSRWPSVSA Trigger: AGCGGAGACGGAAGGCCAGCGAGAGAGAGAAACTCAGGATGCGGACCTTAGCCGATGCCCTCCACACGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 72 bp | AGAGTAGGACTCCAGAGAAGGAGCTGGGGAGAGGCTTaGAGTGGGGGACTCCTGGACCAGCTCCAAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: RVGLQRRSWGEA*SGGLLDQLQGP Trigger: AGGCCCTTGGAGCTGGTCCAGGAGTCCCCCACTCAAAGCCTCTCCCCAGCTCCTTCTCTGGAGTCCTACTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 72 bp | CTGGCCTTCCGTCTCCGCTGGACAGACATCTTGACTTaGCTGCCTTTCTGGCCTTTGAGGCCACCAGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LAFRLRWTDILT*LPFWPLRPPAV Trigger: CACTGCTGGTGGCCTCAAAGGCCAGAAAGGCAGCAAAGTCAAGATGTCTGTCCAGCGGAGACGGAAGGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 72 bp | CTCTCGCTGGCCTTCCGTCTCCGCTGGACAGACATCTaGACTTTGCTGCCTTTCTGGCCTTTGAGGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: LSLAFRLRWTDI*TLLPFWPLRPP Trigger: TGGTGGCCTCAAAGGCCAGAAAGGCAGCAAAGTCAAGATGTCTGTCCAGCGGAGACGGAAGGCCAGCGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 72 bp | CACACACTCTGTGGCCTGGGCTCTCTCCCGCTGCTGTaGAGGAGGTCTGTGAGTTCCCCGATGTACTTGATG | + |
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Preference number: 6 (lower is better) Translates to: HTLCGLGSLPLL*RRSVSSPMYLM Trigger: CATCAAGTACATCGGGGAACTCACAGACCTCCTCAACAGCAGCGGGAGAGAGCCCAGGCCACAGAGTGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 90 bp | AGTTTCTCTCTCTCGCTGGCCTTCCGTCTCCGCTGGACAGACATCTaGACTTTGCTGCCTTTCTGGCCTTTGAGGCCACCAGCAGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: SFSLSLAFRLRWTDI*TLLPFWPLRPPAVC Trigger: ACACACTGCTGGTGGCCTCAAAGGCCAGAAAGGCAGCAAAGTCAAGATGTCTGTCCAGCGGAGACGGAAGGCCAGCGAGAGAGAGAAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 90 bp | GATGTACTTGATGGTGTACTTGAGTGTCTGGATCTTGGTGAGCGGTaGGCCTCTCTGGCTGTAGACAGGCGGCAGGTAATTCCGGAGCGT | + |
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Preference number: 6 (lower is better) Translates to: DVLDGVLECLDLGER*ASLAVDRRQVIPER Trigger: ACGCTCCGGAATTACCTGCCGCCTGTCTACAGCCAGAGAGGCCAACCGCTCACCAAGATCCAGACACTCAAGTACACCATCAAGTACATC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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| CDS CAA 72 bp | GATGGTGTACTTGAGTGTCTGGATCTTGGTGAGCGGTaGGCCTCTCTGGCTGTAGACAGGCGGCAGGTAATT | + |
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Preference number: 6 (lower is better) Translates to: DGVLECLDLGER*ASLAVDRRQVI Trigger: AATTACCTGCCGCCTGTCTACAGCCAGAGAGGCCAACCGCTCACCAAGATCCAGACACTCAAGTACACCATC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049877.3 |
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