Pregenerated sensors for MSC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025930Ensembl transcript IDs: ENSMUST00000027062.7, ENSMUST00000190719.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACTGCCCTGTCCCTCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTaGAGAAACGTCTTTGCTGTCAGAGTCTGGGCGTCCAGAGACCAC | + |
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Preference number: 1 (lower is better) Translates to: NCPVPLSGSSTKPVG*RNVFAVRVWASRDH Trigger: GTGGTCTCTGGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGTGGAACTTCCGCTTAGAGGGACAGGGCAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR GCA 90 bp | TCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTGCAGAAACGTCTTTaGTGTCAGAGTCTGGGCGTCCAGAGACCACGAATGGCCACGTCT | + |
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Preference number: 1 (lower is better) Translates to: SKRKFHKACWLQKRL*CQSLGVQRPRMATS Trigger: AGACGTGGCCATTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGTGGAACTTCCGCTTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR GCA 90 bp | GACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCTAACTaGCCTGTCCCTCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTGC | + |
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Preference number: 1 (lower is better) Translates to: DFLGPVLCVYHNPSN*PVPLSGSSTKPVGC Trigger: GCAGCCAACAGGCTTTGTGGAACTTCCGCTTAGAGGGACAGGGCAGTTAGATGGATTGTGGTAAACGCAAAGGACTGGGCCAAGGAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR CCA 90 bp | TGTCTTGTTCACAGGCCCAGGGAAAGGAGAAGGTCCAGAATCCAGTaGGACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCT | + |
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Preference number: 1 (lower is better) Translates to: CLVHRPRERRRSRIQ*DFLGPVLCVYHNPS Trigger: AGATGGATTGTGGTAAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGGATTCTGGACCTTCTCCTTTCCCTGGGCCTGTGAACAAGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | GCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCAAACCACACTGCACCCATGGCCACCTaGGCTCCAGGAGGGCAAACC | + |
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Preference number: 2 (lower is better) Translates to: ALIWGTHGHLRSRRANHTAPMAT*APGGQT Trigger: GGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGC...AGTGTGGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | CCTCAACATGTCCTGCCCAGGAAGAGTATGCCACTGTCTGTAGCAACACTGCCCGCACCCATGGCCACCTaGGCTCCAGGAGGGCAAACC | + |
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Preference number: 2 (lower is better) Translates to: PQHVLPRKSMPLSVATLPAPMAT*APGGQT Trigger: GGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGC...GGGCAGTGTTGCTACAGACAGTGGCATACTCTTCCTGGGCAGGACATGTTGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTAGGTCCAGAATCCAGTaGGACTTCCTTGGCCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: AGKQLSSTVTEGPGCAGPRSRIQ*DFLGPV Trigger: GACTGGGCCAAGGAAGTCCCACTGGATTCTGGACCT...AGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTCCAGTGGGACTTCCTTaGCCCAGTCCTTTGCGTTTA | + |
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Preference number: 2 (lower is better) Translates to: AGKQLSSTVTEGPGCAGPPVGLP*PSPLRL Trigger: TAAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGG...AGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CCA 90 bp | GTTACAGAAGTTTGCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGAGGTCCAGAATCCAGTaGGACTTCCTTGGCCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: VTEVCTDLGHPWPPALQERSRIQ*DFLGPV Trigger: GACTGGGCCAAGGAAGTCCCACTGGATTCTGGACCT...CTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTAAGTTTGCACTGATTTaGGGCACCCATGGCCACCTG | + |
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Preference number: 2 (lower is better) Translates to: AGKQLSSTVTEGPGCAGPKFALI*GTHGHL Trigger: CAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTT...AGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR CAA 90 bp | TCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTGCACTGATTaGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCAAACCACAC | + |
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Preference number: 2 (lower is better) Translates to: SPETGLSLVTEVCTD*GHPWPPALQEGKPH Trigger: GTGTGGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTGCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCAAACCAACAAAGCCTGTTGGCTaGAGAAACGTCTTTGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: VCTDLGHPWPPALQEGKPTKPVG*RNVFAV Trigger: GACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGT...TGGTTTGCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCAGGAAGAGTATGCCACTGTCTGTAGCAACACTGCCCTTAGTGACAGGCCACCTCAACATGTCCTaGCCAGGAAGAGTATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: LPRKSMPLSVATLPLVTGHLNMS*PGRVCH Trigger: GTGGCATACTCTTCCTGGGCAGGACATGTTGAGGTG...GCCTGTCACTAAGGGCAGTGTTGCTACAGACAGTGGCATACTCTTCCTGGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCACAGGCCCAGGGAAAGGAGAAGGTCCAGAATCCAGTGGGACTTCCTTGGCCTTGGCCCAGTCCTTTaGGTTTACCACAATCCATCT | + |
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Preference number: 2 (lower is better) Translates to: VHRPRERRRSRIQWDFLGLGPVL*VYHNPS Trigger: AGATGGATTGTGGTAAACGCAAAGGACTGGGCCAAG...GCCAAGGAAGTCCCACTGGATTCTGGACCTTCTCCTTTCCCTGGGCCTGTGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CCA 90 bp | AACCACAAGGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTCCAGTGGGACTTCCTTaGCCCAGTCCTTTGCGTTTA | + |
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Preference number: 2 (lower is better) Translates to: NHKAIKISFKTNPFLHWTPVGLP*PSPLRL Trigger: TAAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGG...AGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR GCA 90 bp | TCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTGCACTCTTGGCCCAGTCCTTTaGGTTTACCACAATCCATCT | + |
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Preference number: 2 (lower is better) Translates to: STYSSPETGLSLVTEVCTLGPVL*VYHNPS Trigger: AGATGGATTGTGGTAAACGCAAAGGACTGGGCCAAG...AGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR CAA 90 bp | AAAATAAATTTATTTACATATGTTAGTTACCATGATAGTGCAGCATaGCCAGGACCACTAAGCACCATGTACTGGGTAGAAACCAGTATA | + |
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Preference number: 2 (lower is better) Translates to: KINLFTYVSYHDSAA*PGPLSTMYWVETSI Trigger: TATACTGGTTTCTACCCAGTACATGGTGCTTAGTGGTCCTGGCAATGCTGCACTATCATGGTAACTAACATATGTAAATAAATTTATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CCA 72 bp | CTGGGCTTTCTTTGGTTACAGAAGTTTGCACTGATTTaGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: LGFLWLQKFALI*GTHGHLRSRRA Trigger: TGCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAGAAAGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCAACATGTCCTGCCCAGGAAGAGTATGCCACTGTCTGTAGCAACACTGCCCTCCAGTGGGACTTCCTaGGCCCAGTCCTTTGCGTTT | + |
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Preference number: 3 (lower is better) Translates to: PQHVLPRKSMPLSVATLPSSGTS*AQSFAF Trigger: AAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGGA...GGGCAGTGTTGCTACAGACAGTGGCATACTCTTCCTGGGCAGGACATGTTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCCCAGGAAGAGTATGCCACTGTCTGTAGCAACACTGCCCTTAGTGACAGGCGCTGCAGAAACGTCTTaGCTGTCAGAGTCTGGGCGT | + |
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Preference number: 3 (lower is better) Translates to: LPRKSMPLSVATLPLVTGAAETS*LSESGR Trigger: ACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGC...GCCTGTCACTAAGGGCAGTGTTGCTACAGACAGTGGCATACTCTTCCTGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR GCA 72 bp | GTCCCTCTAAGCGGAAGTTCCACAAAGCCTGTTGGCTaGAGAAACGTCTTTGCTGTCAGAGTCTGGGCGTCC | + |
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Preference number: 3 (lower is better) Translates to: VPLSGSSTKPVG*RNVFAVRVWAS Trigger: GGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGTGGAACTTCCGCTTAGAGGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | AAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTTGCCATCACTTGTCTCCTGTCTaGTTCACAGGCCCAGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: KQLSSTVTEGPGCAGPCHHLSPV*FTGPGK Trigger: TTTCCCTGGGCCTGTGAACAAGACAGGAGACAAGTG...ATGGCAAGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR GCA 72 bp | TCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTaGACTGATTTGGGGCACCCATGGCCACCTGCGCTC | + |
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Preference number: 3 (lower is better) Translates to: SPETGLSLVTEV*TDLGHPWPPAL Trigger: GAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR GCA 72 bp | ACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTaGAGGACCTTGCCATCAACCACAAGGCAATCAAGA | + |
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Preference number: 3 (lower is better) Translates to: TALIHGHRRTWL*RTLPSTTRQSR Trigger: TCTTGATTGCCTTGTGGTTGATGGCAAGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR CCA 72 bp | CCTGAAAGACCAGGAACCCCACAGAAGGCTATGCTGTaGCAGGGTGAGACAATTAGAGGGGTGAAGCACATG | + |
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Preference number: 3 (lower is better) Translates to: PERPGTPQKAML*QGETIRGVKHM Trigger: CATGTGCTTCACCCCTCTAATTGTCTCACCCTGCCACAGCATAGCCTTCTGTGGGGTTCCTGGTCTTTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR-3UTR CAA 90 bp | CAGAATCCAGTGGGACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCTCCAGTGGGACTTCCTaGGCCCAGTCCTTTGCGTTT | + |
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Preference number: 3 (lower is better) Translates to: QNPVGLPWPSPLRLPQSISSGTS*AQSFAF Trigger: AAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGGA...GATGGATTGTGGTAAACGCAAAGGACTGGGCCAAGGAAGTCCCACTGGATTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | CTTTGGTTACAGAAGTTTGCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCGAGGGCAAACCACACTaGTCTCCTGTCTTGTTCACA | + |
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Preference number: 3 (lower is better) Translates to: LWLQKFALIWGTHGHLRSEGKPH*SPVLFT Trigger: TGTGAACAAGACAGGAGACAAGTGTGGTTTGCCCTC...GGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR GCA 72 bp | AAGTTCCACAAAGCCTGTTGGCTGCAGAAACGTCTTTaGTGTCAGAGTCTGGGCGTCCAGAGACCACGAATG | + |
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Preference number: 3 (lower is better) Translates to: KFHKACWLQKRL*CQSLGVQRPRM Trigger: CATTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGTGGAACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR GCA 72 bp | GGCCCAGTCCTTTGCGTTTACCACAATCCATCTAACTaGCCTGTCCCTCTAAGCGGAAGTTCCACAAAGCCT | + |
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Preference number: 3 (lower is better) Translates to: GPVLCVYHNPSN*PVPLSGSSTKP Trigger: AGGCTTTGTGGAACTTCCGCTTAGAGGGACAGGGCAGTTAGATGGATTGTGGTAAACGCAAAGGACTGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGGAACTCAGGAAATGAACCCCAGTCTGCAGAGATTTCGAGCAAAACCAGCACACTTGTCTCCTGTCTaGTTCACAGGCCCAGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: EGTQEMNPSLQRFRAKPAHLSPV*FTGPGK Trigger: TTTCCCTGGGCCTGTGAACAAGACAGGAGACAAGTG...TGCTGGTTTTGCTCGAAATCTCTGCAGACTGGGGTTCATTTCCTGAGTTCCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR TCA 72 bp | CACACAGTCCTTGGACCAGGAAGAATAGTACATCCCTaGAAGACCAGGAACCCCACAGAAGGCTATGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: HTVLGPGRIVHP*KTRNPTEGYAV Trigger: CACAGCATAGCCTTCTGTGGGGTTCCTGGTCTTTCAGGGATGTACTATTCTTCCTGGTCCAAGGACTGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CCA 72 bp | AGTGCAGCATTGCCAGGACCACTAAGCACCATGTACTaGGTAGAAACCAGTATAATAGAGACCAGCCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: SAALPGPLSTMY*VETSIIETSPS Trigger: GCTAGGGCTGGTCTCTATTATACTGGTTTCTACCCAGTACATGGTGCTTAGTGGTCCTGGCAATGCTGCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR-3UTR CAA 90 bp | AACCACAAGGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTGAAGTTTGCACTGATTaGGGGCACCCATGGCCACCT | + |
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Preference number: 3 (lower is better) Translates to: NHKAIKISFKTNPFLHWTEVCTD*GHPWPP Trigger: AGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTC...AGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR TCA 72 bp | GCCCTAGGTTTTTACCTGGTCCACGTATTCTTCCCCTaGAACTGGGCTTTCTTTGGTTACAGAAGTTTGCAC | + |
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Preference number: 3 (lower is better) Translates to: ALGFYLVHVFFP*NWAFFGYRSLH Trigger: GTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGACCAGGTAAAAACCTAGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | AACCACAAGGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTGAAACTGGGCTTTCTTaGGTTACAGAAGTTTGCACT | + |
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Preference number: 3 (lower is better) Translates to: NHKAIKISFKTNPFLHWTETGLS*VTEVCT Trigger: AGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTC...AGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| 3UTR-3UTR CAA 90 bp | AATTTATTTACATATGTTAGTTACCATGATAGTGCAGCATTGCCAGGACCACTAGAAACTGGGCTTTCTTaGGTTACAGAAGTTTGCACT | + |
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Preference number: 3 (lower is better) Translates to: NLFTYVSYHDSAALPGPLETGLS*VTEVCT Trigger: AGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTC...TAGTGGTCCTGGCAATGCTGCACTATCATGGTAACTAACATATGTAAATAAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CCA 90 bp | CTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTTGCAGGGGCGGCCTCTTaGAGGCCGGGGCCGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: LGNSSHPRSQKDLAVQDLAGAAS*RPGPGR Trigger: TCTACCCGGCCCCGGCCTCCAAGAGGCCGCCCCTGC...AAGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR GCA 90 bp | CAGAAGTTTGCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGCATCCGCTGCGACTGCTTaGACTCTGCGGCCGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: QKFALIWGTHGHLRSRRASAATA*TLRPSP Trigger: AGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGA...TGCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR GCA 90 bp | AAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCAGGACCTTGCCATGGAGCCGCTTCCTCTTaGATCCTCCCGCGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KQLSSTVTEGPGCAGPCHGAASS*ILPRLP Trigger: TGGGAGCCGCGGGAGGATGCAAGAGGAAGCGGCTCC...ATGGCAAGGTCCTGCACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR GCA 90 bp | CTTTGGTTACAGAAGTTTGCACTGATTTGGGGCACCCATGGCCACCTGCGCTCCCGACTGCTTGCACTCTaGGGCCGAGCCCTTAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LWLQKFALIWGTHGHLRSRLLAL*GRALRR Trigger: CCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCG...GGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CAA 72 bp | CCATGGCCACCTGCGCTCCAGGAGGGCAAACCACACTaGTCTCCTGTCTTGTTCACAGGCCCAGGGAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: PWPPALQEGKPH*SPVLFTGPGKG Trigger: TCCTTTCCCTGGGCCTGTGAACAAGACAGGAGACAAGTGTGGTTTGCCCTCCTGGAGCGCAGGTGGCCATGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| CDS-3UTR GCA 90 bp | CTTTCTAGTGCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGCATTCCGCTGCGACTaGTTGCACTCTGCGGCCGAG | + |
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Preference number: 4 (lower is better) Translates to: LSSAGKQLSSTVTEGPGCAFRCD*LHSAAE Trigger: CTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGC...ACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGCACTAGAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CAA 72 bp | ACTGGGCTTTCTTTGGTTACAGAAGTTTGCACTGATTaGGGGCACCCATGGCCACCTGCGCTCCAGGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: TGLSLVTEVCTD*GHPWPPALQEG Trigger: GCCCTCCTGGAGCGCAGGTGGCCATGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAGAAAGCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| CDS-3UTR GCA 90 bp | CCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTGCACTGCGTAACCGCGCTCCATaGGGAGCAGGGGCGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: PRILPLKLGFLWLQKFALRNRAP*GAGAAS Trigger: AGAGGCCGCCCCTGCTCCGCATGGAGCGCGGTTACG...CAGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR GCA 90 bp | GAGGGAACTCAGGAAATGAACCCCAGTCTGCAGAGATTTCGAGCAAAACCAGCATTGGCCGCATTCCGCTaGGACTGCTTGCACTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: EGTQEMNPSLQRFRAKPALAAFR*DCLHSA Trigger: CGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAA...TGCTGGTTTTGCTCGAAATCTCTGCAGACTGGGGTTCATTTCCTGAGTTCCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CCA 90 bp | AACCACAAGGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTCGCGTTCGCGGGCGTTaGCCGCATTCCGCTGCGACT | + |
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Preference number: 4 (lower is better) Translates to: NHKAIKISFKTNPFLHWTRVRGR*PHSAAT Trigger: AGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCG...AGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR GCA 90 bp | CTTTCTAGTGCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTCTGCAGAAACGTCTTTaGTGTCAGAGTCTGGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: LSSAGKQLSSTVTEGPGCLQKRL*CQSLGV Trigger: GACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAG...ACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGCACTAGAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CAA 72 bp | GAAGTTCCACAAAGCCTGTTGGCTGCAGAAACGTCTTaGCTGTCAGAGTCTGGGCGTCCAGAGACCACGAAT | + |
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Preference number: 4 (lower is better) Translates to: EVPQSLLAAETS*LSESGRPETTN Trigger: ATTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGTGGAACTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| CDS-3UTR GCA 90 bp | ACTTCCTTGGCCCAGTCCTTTGCGTTTACCACAATCCATCTAACTGCCCTGTCCACAAAGCCTGTTGGCTaGAGAAACGTCTTTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: TSLAQSFAFTTIHLTALSTKPVG*RNVFAV Trigger: GACAGCAAAGACGTTTCTGCAGCCAACAGGCTTTGT...GGACAGGGCAGTTAGATGGATTGTGGTAAACGCAAAGGACTGGGCCAAGGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CCA 90 bp | GGTCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTGCATTTGCTGTCAGAGTCTaGGCGTCCAGAGACCACGAA | + |
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Preference number: 4 (lower is better) Translates to: GPRILPLKLGFLWLQKFAFAVRV*ASRDHE Trigger: TTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAA...TGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| 3UTR CAA 72 bp | TGGTCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTaGGTTACAGAAGTTTGCACTGATTTGGGGCACCCA | + |
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Preference number: 4 (lower is better) Translates to: WSTYSSPETGLS*VTEVCTDLGHP Trigger: TGGGTGCCCCAAATCAGTGCAAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027062.7 ENSMUST00000190719.2 |
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| CDS-3UTR GCA 90 bp | AACCACAAGGCAATCAAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTGCTTTCCTCATGGGTTaGCCACATGATTTTTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: NHKAIKISFKTNPFLHWTAFLMG*PHDFSG Trigger: ACCTGAAAAATCATGTGGGCAACCCATGAGGAAAGC...AGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190719.2 |
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| 3UTR CAA 72 bp | TTATTTACATATGTTAGTTACCATGATAGTGCAGCATaGCCAGGACCACTAAGCACCATGTACTGGGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: LFTYVSYHDSAA*PGPLSTMYWVE Trigger: TTCTACCCAGTACATGGTGCTTAGTGGTCCTGGCAATGCTGCACTATCATGGTAACTAACATATGTAAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | TGCGGCCGAGCCCTTAGGCGGGAGCGGCTTCTTCCCCGCACCGCCTaGGCGGCCACCTGCGCCGCCAGCGTCAGCCCCACGGAGCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: CGRALRRERLLPRTA*AATCAASVSPTEPL Trigger: AAGCGGCTCCGTGGGGCTGACGCTGGCGGCGCAGGTGGCCGCGCAGGCGGTGCGGGGAAGAAGCCGCTCCCGCCTAAGGGCTCGGCCGCA 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | CTTAGGCGGGAGCGGCTTCTTCCCCGCACCGCCTGCGCGGCCACCTaGGCCGCCAGCGTCAGCCCCACGGAGCCGCTTCCTCTTGCATCC | + |
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Preference number: 5 (lower is better) Translates to: LRRERLLPRTACAAT*AASVSPTEPLPLAS Trigger: GGATGCAAGAGGAAGCGGCTCCGTGGGGCTGACGCTGGCGGCGCAGGTGGCCGCGCAGGCGGTGCGGGGAAGAAGCCGCTCCCGCCTAAG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | AGCACGCGCATCCGGGCGCGTTCGCGGGCGTTGGCCGCATTCCGCTaGGACTGCTTGCACTCTGCGGCCGAGCCCTTAGGCGGGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: STRIRARSRALAAFR*DCLHSAAEPLGGSG Trigger: GCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGATGCGCGTGCT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | GCGTTCGCGGGCGTTGGCCGCATTCCGCTGCGACTGCTTGCACTCTaGGGCCGAGCCCTTAGGCGGGAGCGGCTTCTTCCCCGCACCGCC | + |
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Preference number: 5 (lower is better) Translates to: AFAGVGRIPLRLLAL*GRALRRERLLPRTA Trigger: GGCGGTGCGGGGAAGAAGCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | CGCATCCGGGCGCGTTCGCGGGCGTTGGCCGCATTCCGCTGCGACTaGTTGCACTCTGCGGCCGAGCCCTTAGGCGGGAGCGGCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: RIRARSRALAAFRCD*LHSAAEPLGGSGFF Trigger: GAAGAAGCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGATGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 90 bp | CTTCCGCAGAAGAAATGTCGCTGGGCGAGCCGTAACCGCGCTCCATaGGGAGCAGGGGCGGCCTCTTGGAGGCCGGGGCCGGGTAGACCC | + |
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Preference number: 5 (lower is better) Translates to: LPQKKCRWASRNRAP*GAGAASWRPGPGRP Trigger: GGGTCTACCCGGCCCCGGCCTCCAAGAGGCCGCCCCTGCTCCGCATGGAGCGCGGTTACGGCTCGCCCAGCGACATTTCTTCTGCGGAAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CCA 90 bp | CGGGCTCCTCTTCACCGTCCTCCTCTTCCGCAGAAGAAATGTCGCTaGGCGAGCCGTAACCGCGCTCCATGCGGAGCAGGGGCGGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RAPLHRPPLPQKKCR*ASRNRAPCGAGAAS Trigger: AGAGGCCGCCCCTGCTCCGCATGGAGCGCGGTTACGGCTCGCCCAGCGACATTTCTTCTGCGGAAGAGGAGGACGGTGAAGAGGAGCCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CAA 90 bp | AAGATTAGCTTCAAAACCAACCCGTTTCTGCACTGGACTCAGATAGCAGGCAGGCGGAGCCGCTTCCTCTaGCATCCTCCCGCGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: KISFKTNPFLHWTQIAGRRSRFL*HPPAAP Trigger: GGGAGCCGCGGGAGGATGCAAGAGGAAGCGGCTCCG...CCTGCCTGCTATCTGAGTCCAGTGCAGAAACGGGTTGGTTTTGAAGCTAATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CAA 90 bp | CCTGGTCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTGGTTACAGAAGTTTGCGCGTTCGCGGGCGTaGGCCGCATTCCGCTGCGAC | + |
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Preference number: 5 (lower is better) Translates to: PGPRILPLKLGFLWLQKFARSRA*AAFRCD Trigger: GTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGC...AAACTTCTGTAACCAAAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGACCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CAA 90 bp | AGCCCTAGGTTTTTACCTGGTCCACGTATTCTTCCCCTGAAACTGGGCTTTCTTTTCCGCTGCGACTGCTaGCACTCTGCGGCCGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: SPRFLPGPRILPLKLGFLFRCDC*HSAAEP Trigger: GGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAA...AAGAAAGCCCAGTTTCAGGGGAAGAATACGTGGACCAGGTAAAAACCTAGGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS-3UTR CAA 90 bp | TTTCTAGTGCTGGGAAACAGCTCTCATCCACGGTCACAGAAGGACCTGGCTGTGGCTGCAGAAACGTCTTaGCTGTCAGAGTCTGGGCGT | + |
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Preference number: 5 (lower is better) Translates to: FLVLGNSSHPRSQKDLAVAAETS*LSESGR Trigger: ACGCCCAGACTCTGACAGCAAAGACGTTTCTGCAGC...CACAGCCAGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGCACTAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CAA 72 bp | GCGCCGCCAGCGTCAGCCCCACGGAGCCGCTTCCTCTaGCATCCTCCCGCGGCTCCCAGGGAGCCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: APPASAPRSRFL*HPPAAPREPGS Trigger: GGAGCCCGGCTCCCTGGGAGCCGCGGGAGGATGCAAGAGGAAGCGGCTCCGTGGGGCTGACGCTGGCGGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CCA 72 bp | CGTAACCGCGCTCCATGCGGAGCAGGGGCGGCCTCTTaGAGGCCGGGGCCGGGTAGACCCTCTGCAGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: RNRAPCGAGAAS*RPGPGRPSAAP Trigger: GGGGGCTGCAGAGGGTCTACCCGGCCCCGGCCTCCAAGAGGCCGCCCCTGCTCCGCATGGAGCGCGGTTACG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CAA 90 bp | CGGCCACCTGCGCCGCCAGCGTCAGCCCCACGGAGCCGCTTCCTCTaGCATCCTCCCGCGGCTCCCAGGGAGCCGGGCTCCTCTTCACCG | + |
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Preference number: 6 (lower is better) Translates to: RPPAPPASAPRSRFL*HPPAAPREPGSSSP Trigger: CGGTGAAGAGGAGCCCGGCTCCCTGGGAGCCGCGGGAGGATGCAAGAGGAAGCGGCTCCGTGGGGCTGACGCTGGCGGCGCAGGTGGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 72 bp | GCGCGTTCGCGGGCGTTGGCCGCATTCCGCTGCGACTaGTTGCACTCTGCGGCCGAGCCCTTAGGCGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: ARSRALAAFRCD*LHSAAEPLGGS Trigger: GCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CAA 72 bp | CGTTCGCGGGCGTTGGCCGCATTCCGCTGCGACTGCTaGCACTCTGCGGCCGAGCCCTTAGGCGGGAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: RSRALAAFRCDC*HSAAEPLGGSG Trigger: GCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CAA 90 bp | ATCCGGGCGCGTTCGCGGGCGTTGGCCGCATTCCGCTGCGACTGCTaGCACTCTGCGGCCGAGCCCTTAGGCGGGAGCGGCTTCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: IRARSRALAAFRCDC*HSAAEPLGGSGFFP Trigger: GGGGAAGAAGCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 72 bp | AAGAAATGTCGCTGGGCGAGCCGTAACCGCGCTCCATaGGGAGCAGGGGCGGCCTCTTGGAGGCCGGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: KKCRWASRNRAP*GAGAASWRPGP Trigger: CGGCCCCGGCCTCCAAGAGGCCGCCCCTGCTCCGCATGGAGCGCGGTTACGGCTCGCCCAGCGACATTTCTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 72 bp | ATCCGGGCGCGTTCGCGGGCGTTGGCCGCATTCCGCTaGGACTGCTTGCACTCTGCGGCCGAGCCCTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: IRARSRALAAFR*DCLHSAAEPLG Trigger: GCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CCA 72 bp | TGCTCAGCACGCGCATCCGGGCGCGTTCGCGGGCGTTaGCCGCATTCCGCTGCGACTGCTTGCACTCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: CSARASGRVRGR*PHSAATACTLR Trigger: CCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCCCGCGAACGCGCCCGGATGCGCGTGCTGAGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS GCA 72 bp | GGCGTTGGCCGCATTCCGCTGCGACTGCTTGCACTCTaGGGCCGAGCCCTTAGGCGGGAGCGGCTTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: GVGRIPLRLLAL*GRALRRERLLP Trigger: GGGAAGAAGCCGCTCCCGCCTAAGGGCTCGGCCGCAGAGTGCAAGCAGTCGCAGCGGAATGCGGCCAACGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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| CDS CCA 72 bp | TTTGCTGTCAGAGTCTGGGCGTCCAGAGACCACGAATaGCCACGTCAGGTTCACAGGGTGCACATAGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: FAVRVWASRDHE*PRQVHRVHIAV Trigger: GACAGCTATGTGCACCCTGTGAACCTGACGTGGCCATTCGTGGTCTCTGGACGCCCAGACTCTGACAGCAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027062.7 |
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