RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MSANTD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039693

Ensembl transcript IDs: ENSMUST00000061135.8, ENSMUST00000064807.9, ENSMUST00000107704.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GAAGCCGCCTCTGCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCAAAGCTCCAGTCAGCTaGAAAACAAACAAAAGAACA +
Preference number: 2 (lower is better)
Translates to: EAASAGDVVGWKASLGKVKAPVS*KTNKRT
Trigger: TGTTCTTTTGTTTGTTTTTCAGCTGACTGGAGCTTT...GACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGCAGAGGCGGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
3UTR-3UTR TCA 90 bp CAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGAAAGCTCCAGTCAGCTaGAAAACAAACAAAAGAACA +
Preference number: 2 (lower is better)
Translates to: QFVTHMRKHPSKGWALQTKAPVS*KTNKRT
Trigger: TGTTCTTTTGTTTGTTTTTCAGCTGACTGGAGCTTT...CGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
3UTR-3UTR CAA 90 bp GAAGCCGCCTCTGCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCGACTGTAACAGCTTCTaGGCCACCTCGGGGGTAGAC +
Preference number: 3 (lower is better)
Translates to: EAASAGDVVGWKASLGKVDCNSF*ATSGVD
Trigger: GTCTACCCCCGAGGTGGCCAAGAAGCTGTTACAGTC...GACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGCAGAGGCGGCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
3UTR CCA 72 bp TGTATTGAAGCCGCCTCTGCTGGAGACGTGGTTGGTTaGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAAT +
Preference number: 3 (lower is better)
Translates to: CIEAASAGDVVG*KASLGKVLKGN
Trigger: ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGCAGAGGCGGCTTCAATACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp GAAGCCGCCTCTGCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTGCGAGTTGTACTCGTaGGCCAAGGCCTGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: EAASAGDVVGWKASLGKVCELYS*AKACQV
Trigger: GACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCA...GACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGCAGAGGCGGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCGCGGCCGCATCCTGGTaGTATTCGGGCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGAAASW*YSGSSS
Trigger: GGAGGAGGAGCCCGAATACCACCAGGATGCGGCCGC...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTTGGGCGGCCGCATCCTaGTGGTATTCGGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSWAAAS*WYSGSS
Trigger: GGAGGAGCCCGAATACCACCAGGATGCGGCCGCCCA...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCTCGTGGGCCAAGGCCTaGCAGGTCCGCTGCTTGAGA +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGSWAKA*QVRCLR
Trigger: TCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGA...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTAGCGACACGCTGGGCTaGGAGTTGTACTCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSSDTLG*ELYSWA
Trigger: GGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCT...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp TTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGACCGCCTGCCAGGTCCGCTaGTTGAGAGCAATAGTCCGC +
Preference number: 4 (lower is better)
Translates to: FVTHMRKHPSKGWALQTTACQVR*LRAIVR
Trigger: GCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGC...GGTCGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCGCCTGCCAGGTCCGCTaGTTGAGAGCAATAGTCCGC +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGACQVR*LRAIVR
Trigger: GCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGC...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTTGCGAGTTGTACTCGTaGGCCAAGGCCTGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSCELYS*AKACQV
Trigger: GACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCA...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCGGGCTCCTCCTCCGGTaGGCTCTGAAGGAAGTACAG +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGGLLLR*ALKEVQ
Trigger: CTGTACTTCCTTCAGAGCCCACCGGAGGAGGAGCCC...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATGCGGCCGCATCCTGGTaGTATTCGGGCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNAAASW*YSGSSS
Trigger: GGAGGAGGAGCCCGAATACCACCAGGATGCGGCCGC...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTGGGCGGCCGCATCCTaGTGGTATTCGGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNWAAAS*WYSGSS
Trigger: GGAGGAGCCCGAATACCACCAGGATGCGGCCGCCCA...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCACAGCAAAGGACTCTTaGGCGGCCGCATCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGTAKDS*AAASWW
Trigger: CCACCAGGATGCGGCCGCCCAAGAGTCCTTTGCTGT...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR TCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCCCGGCAGCATGCTGCTaGTCTTCTCCTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGPAACC*SSPCPG
Trigger: TCCTGGACAAGGAGAAGATCAGCAGCATGCTGCCGG...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR TCA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTCCGGCAGCATGCTGCTaGTCTTCTCCTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSPAACC*SSPCPG
Trigger: TCCTGGACAAGGAGAAGATCAGCAGCATGCTGCCGG...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR TCA 90 bp TTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGACCCCGGCAGCATGCTGCTaGTCTTCTCCTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FVTHMRKHPSKGWALQTTPAACC*SSPCPG
Trigger: TCCTGGACAAGGAGAAGATCAGCAGCATGCTGCCGG...GGTCGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR TCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCTCCTCCGGTGGGCTCTaGAGGAAGTACAGTTGCTCC +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGSSGGL*RKYSCS
Trigger: GGAGCAACTGTACTTCCTTCAGAGCCCACCGGAGGA...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp AGGCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAGCCTGCCAGGTCCGCTaGTTGAGAGCAATAGTCCGC +
Preference number: 4 (lower is better)
Translates to: RQFVTHMRKHPSKGWALQACQVR*LRAIVR
Trigger: GCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGC...TTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTCGTGGGCCAAGGCCTaGCAGGTCCGCTGCTTGAGA +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNSWAKA*QVRCLR
Trigger: TCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGA...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATAGCGACACGCTGGGCTaGGAGTTGTACTCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNSDTLG*ELYSWA
Trigger: GGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCT...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp GCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACTGCGAGTTGTACTCGTaGGCCAAGGCCTGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: AICDPHEETPLQRLGSSNCELYS*AKACQV
Trigger: GACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCA...GTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp AGGCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAGGGCTCCTCCTCCGGTaGGCTCTGAAGGAAGTACAG +
Preference number: 4 (lower is better)
Translates to: RQFVTHMRKHPSKGWALQGLLLR*ALKEVQ
Trigger: CTGTACTTCCTTCAGAGCCCACCGGAGGAGGAGCCC...TTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp AGGCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACAGCAAAGGACTCTTaGGCGGCCGCATCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: RQFVTHMRKHPSKGWALQTAKDS*AAASWW
Trigger: CCACCAGGATGCGGCCGCCCAAGAGTCCTTTGCTGT...TTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR TCA 90 bp AGGCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAATCCTCCGGTGGGCTCTaGAGGAAGTACAGTTGCTCC +
Preference number: 4 (lower is better)
Translates to: RQFVTHMRKHPSKGWALQSSGGL*RKYSCS
Trigger: GGAGCAACTGTACTTCCTTCAGAGCCCACCGGAGGA...TTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp TTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTTGTGACCCACATGAGGGCGGCCGCATCCTGGTaGTATTCGGGCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LESLSGESLKRQFVTHMRAAASW*YSGSSS
Trigger: GGAGGAGGAGCCCGAATACCACCAGGATGCGGCCGC...CCTCATGTGGGTCACAAATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATACAGCAAAGGACTCTTaGGCGGCCGCATCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNTAKDS*AAASWW
Trigger: CCACCAGGATGCGGCCGCCCAAGAGTCCTTTGCTGT...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp TTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTTGTGACCCACATGAGGAGCGACACGCTGGGCTaGGAGTTGTACTCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: LESLSGESLKRQFVTHMRSDTLG*ELYSWA
Trigger: GGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCT...CCTCATGTGGGTCACAAATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTTGGTGCTCCTCCTCGTaGATTTTCTTTAAAGCACCT +
Preference number: 4 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSWCSSS*IFFKAP
Trigger: AGGTGCTTTAAAGAAAATGCACGAGGAGGAGCACCA...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCTCCTTGGTAAAAGTCTaGAGTTTCCTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGSLVKV*SFLSQY
Trigger: GTACTGGGAGAGGAAACTGCAGACTTTTACCAAGGA...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp CAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGTGGTGCTCCTCCTCGTaGATTTTCTTTAAAGCACCT +
Preference number: 4 (lower is better)
Translates to: QFVTHMRKHPSKGWALQTWCSSS*IFFKAP
Trigger: AGGTGCTTTAAAGAAAATGCACGAGGAGGAGCACCA...CGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp CAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGTCCTTGGTAAAAGTCTaGAGTTTCCTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: QFVTHMRKHPSKGWALQTSLVKV*SFLSQY
Trigger: GTACTGGGAGAGGAAACTGCAGACTTTTACCAAGGA...CGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTGGTGCTCCTCCTCGTaGATTTTCTTTAAAGCACCT +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNWCSSS*IFFKAP
Trigger: AGGTGCTTTAAAGAAAATGCACGAGGAGGAGCACCA...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR GCA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTCCTTGGTAAAAGTCTaGAGTTTCCTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNSLVKV*SFLSQY
Trigger: GTACTGGGAGAGGAAACTGCAGACTTTTACCAAGGA...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS GCA 90 bp CGCAGCGACACGCTGGGCTGCGAGTTGTACTCGTGGGCCAAGGCCTaGCAGGTCCGCTGCTTGAGAGCAATAGTCCGCGCGTCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: RSDTLGCELYSWAKA*QVRCLRAIVRASLF
Trigger: GAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCTGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CCA 90 bp TGTTTGAAGTCCCGCAGCGACACGCTGGGCTGCGAGTTGTACTCGTaGGCCAAGGCCTGCCAGGTCCGCTGCTTGAGAGCAATAGTCCGC +
Preference number: 5 (lower is better)
Translates to: CLKSRSDTLGCELYS*AKACQVRCLRAIVR
Trigger: GCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCTGCGGGACTTCAAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS GCA 90 bp CTGGGCTGCGAGTTGTACTCGTGGGCCAAGGCCTGCCAGGTCCGCTaGTTGAGAGCAATAGTCCGCGCGTCGCTCTTCTTGCATTCCAAC +
Preference number: 5 (lower is better)
Translates to: LGCELYSWAKACQVR*LRAIVRASLFLHSN
Trigger: GTTGGAATGCAAGAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTACGCTGGGCTGCGAGTaGTACTCGTGGGCCAAGGCC +
Preference number: 5 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSTLGCE*YSWAKA
Trigger: GGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGT...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCACGCTGGGCTGCGAGTaGTACTCGTGGGCCAAGGCC +
Preference number: 5 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGTLGCE*YSWAKA
Trigger: GGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGT...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp GAAGCCGCCTCTGCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCCACTTCTTGAGCTGTTaGAAGTCCCGCAGCGACACG +
Preference number: 5 (lower is better)
Translates to: EAASAGDVVGWKASLGKVHFLSC*KSRSDT
Trigger: CGTGTCGCTGCGGGACTTCAAACAGCTCAAGAAGTG...GACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGCAGAGGCGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCCCACACTCGCCTTGCCAACAGAGATTAACTACAAGGGAGCCATCCCCAAGTCTGCTGATCTTCTCCTaGTCCAGGACGTGGCTGCTC +
Preference number: 5 (lower is better)
Translates to: TPHSPCQQRLTTREPSPSLLIFS*SRTWLL
Trigger: GAGCAGCCACGTCCTGGACAAGGAGAAGATCAGCAG...ACTTGGGGATGGCTCCCTTGTAGTTAATCTCTGTTGGCAAGGCGAGTGTGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCCACTTCTTGAGCTGTTaGAAGTCCCGCAGCGACACG +
Preference number: 5 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGHFLSC*KSRSDT
Trigger: CGTGTCGCTGCGGGACTTCAAACAGCTCAAGAAGTG...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp GCAATTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACCTGCTGATCTTCTCCTaGTCCAGGACGTGGCTGCTC +
Preference number: 5 (lower is better)
Translates to: AICDPHEETPLQRLGSSNLLIFS*SRTWLL
Trigger: GAGCAGCCACGTCCTGGACAAGGAGAAGATCAGCAG...GTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATCTGCTGATCTTCTCCTaGTCCAGGACGTGGCTGCTC +
Preference number: 5 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNLLIFS*SRTWLL
Trigger: GAGCAGCCACGTCCTGGACAAGGAGAAGATCAGCAG...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCTTGAGGACTTCCATTTaGATCCGGTGCTCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGLRTSI*IRCSSS
Trigger: CGAGGAGGAGCACCGGATCAAAATGGAAGTCCTCAA...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp TTTGTGACCCACATGAGGAAACACCCCTCCAAAGGCTGGGCTCTTCAAACGACCTTGAGGACTTCCATTTaGATCCGGTGCTCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: FVTHMRKHPSKGWALQTTLRTSI*IRCSSS
Trigger: CGAGGAGGAGCACCGGATCAAAATGGAAGTCCTCAA...GGTCGTTTGAAGAGCCCAGCCTTTGGAGGGGTGTTTCCTCATGTGGGTCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS CCA 90 bp TGGCCACGTGCACCTCGTTCATTTGGATCAGCTGCAGCTGTAAGATaGACATCTGCTGATGGTGCTCCTCCTCGTGCATTTTCTTTAAAG +
Preference number: 5 (lower is better)
Translates to: WPRAPRSFGSAAAVR*TSADGAPPRAFSLK
Trigger: CTTTAAAGAAAATGCACGAGGAGGAGCACCATCAGCAGATGTCCATCTTACAGCTGCAGCTGATCCAAATGAACGAGGTGCACGTGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp ACCACTCTAATCCACCTAGACGCAGGTCTGTTGCGGGCTAGTGACCAAAAAGGCAGCTCCGAGAAGTACTaGGCAGGTTTAATGATTTCG +
Preference number: 5 (lower is better)
Translates to: TTLIHLDAGLLRASDQKGSSEKY*AGLMIS
Trigger: CGAAATCATTAAACCTGCCAAGTACTTCTCGGAGCT...GCCTTTTTGGTCACTAGCCCGCAACAGACCTGCGTCTAGGTGGATTAGAGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp TTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTTGTGACCCACATGAGGCACTTCTTGAGCTGTTaGAAGTCCCGCAGCGACACG +
Preference number: 5 (lower is better)
Translates to: LESLSGESLKRQFVTHMRHFLSC*KSRSDT
Trigger: CGTGTCGCTGCGGGACTTCAAACAGCTCAAGAAGTG...CCTCATGTGGGTCACAAATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp TTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATTTGTGACCCACATGAGGTTGAGGACTTCCATTTaGATCCGGTGCTCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: LESLSGESLKRQFVTHMRLRTSI*IRCSSS
Trigger: CGAGGAGGAGCACCGGATCAAAATGGAAGTCCTCAA...CCTCATGTGGGTCACAAATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp GCTGGAGACGTGGTTGGTTGGAAAGCCTCTCTGGGGAAAGTCTTAAAAGGCAATAGCTCCGAGAAGTACTaGGCAGGTTTAATGATTTCG +
Preference number: 5 (lower is better)
Translates to: AGDVVGWKASLGKVLKGNSSEKY*AGLMIS
Trigger: CGAAATCATTAAACCTGCCAAGTACTTCTCGGAGCT...ATTGCCTTTTAAGACTTTCCCCAGAGAGGCTTTCCAACCAACCACGTCTCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS-3UTR CAA 90 bp CCACTAAAAGATAAAGTCAAAATCACCAGCCACACTCCTTTATCTTGCATTTCTAGCTCCGAGAAGTACTaGGCAGGTTTAATGATTTCG +
Preference number: 5 (lower is better)
Translates to: PLKDKVKITSHTPLSCISSSEKY*AGLMIS
Trigger: CGAAATCATTAAACCTGCCAAGTACTTCTCGGAGCT...AGAAATGCAAGATAAAGGAGTGTGGCTGGTGATTTTGACTTTATCTTTTAGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061135.8
ENSMUST00000107704.2
CDS CCA 72 bp TCCCGCAGCGACACGCTGGGCTGCGAGTTGTACTCGTaGGCCAAGGCCTGCCAGGTCCGCTGCTTGAGAGCA +
Preference number: 6 (lower is better)
Translates to: SRSDTLGCELYS*AKACQVRCLRA
Trigger: TGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCTGCGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS GCA 72 bp ACGCTGGGCTGCGAGTTGTACTCGTGGGCCAAGGCCTaGCAGGTCCGCTGCTTGAGAGCAATAGTCCGCGCG +
Preference number: 6 (lower is better)
Translates to: TLGCELYSWAKA*QVRCLRAIVRA
Trigger: CGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS GCA 72 bp GAGTTGTACTCGTGGGCCAAGGCCTGCCAGGTCCGCTaGTTGAGAGCAATAGTCCGCGCGTCGCTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: ELYSWAKACQVR*LRAIVRASLFL
Trigger: CAAGAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CAA 90 bp GGCTGCGAGTTGTACTCGTGGGCCAAGGCCTGCCAGGTCCGCTGCTaGAGAGCAATAGTCCGCGCGTCGCTCTTCTTGCATTCCAACACA +
Preference number: 6 (lower is better)
Translates to: GCELYSWAKACQVRC*RAIVRASLFLHSNT
Trigger: TGTGTTGGAATGCAAGAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CAA 72 bp TTGTACTCGTGGGCCAAGGCCTGCCAGGTCCGCTGCTaGAGAGCAATAGTCCGCGCGTCGCTCTTCTTGCAT +
Preference number: 6 (lower is better)
Translates to: LYSWAKACQVRC*RAIVRASLFLH
Trigger: ATGCAAGAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCGGACCTGGCAGGCCTTGGCCCACGAGTACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS GCA 72 bp ATCTTCTTTTTATTGAGGACTTCCATTTTGATCCGGTaGTCCTCCTCGGCCATCTCGCACTCGCGCTCGATC +
Preference number: 6 (lower is better)
Translates to: IFFLLRTSILIR*SSSAISHSRSI
Trigger: GATCGAGCGCGAGTGCGAGATGGCCGAGGAGGAGCACCGGATCAAAATGGAAGTCCTCAATAAAAAGAAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CAA 90 bp AGAGCAATAGTCCGCGCGTCGCTCTTCTTGCATTCCAACACATACTaGTACTTCTCTACCAAGGCAAGCAAGATGCTCTTCTCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: RAIVRASLFLHSNTY*YFSTKASKMLFSSS
Trigger: GGAGCTGGAGAAGAGCATCTTGCTTGCCTTGGTAGAGAAGTACAAGTATGTGTTGGAATGCAAGAAGAGCGACGCGCGGACTATTGCTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CAA 72 bp GTCCGCGCGTCGCTCTTCTTGCATTCCAACACATACTaGTACTTCTCTACCAAGGCAAGCAAGATGCTCTTC +
Preference number: 6 (lower is better)
Translates to: VRASLFLHSNTY*YFSTKASKMLF
Trigger: GAAGAGCATCTTGCTTGCCTTGGTAGAGAAGTACAAGTATGTGTTGGAATGCAAGAAGAGCGACGCGCGGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS CAA 72 bp TCCCAGTACATCTTCTTTTTATTGAGGACTTCCATTTaGATCCGGTGCTCCTCCTCGGCCATCTCGCACTCG +
Preference number: 6 (lower is better)
Translates to: SQYIFFLLRTSI*IRCSSSAISHS
Trigger: CGAGTGCGAGATGGCCGAGGAGGAGCACCGGATCAAAATGGAAGTCCTCAATAAAAAGAAGATGTACTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2
CDS GCA 72 bp ACACATACTTGTACTTCTCTACCAAGGCAAGCAAGATaGTCTTCTCCAGCTCCGAGAAGTACTTGGCAGGTT +
Preference number: 6 (lower is better)
Translates to: THTCTSLPRQAR*SSPAPRSTWQV
Trigger: AACCTGCCAAGTACTTCTCGGAGCTGGAGAAGAGCATCTTGCTTGCCTTGGTAGAGAAGTACAAGTATGTGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061135.8
ENSMUST00000064807.9
ENSMUST00000107704.2