Pregenerated sensors for MS4A8A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024730Ensembl transcript IDs: ENSMUST00000025636.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGGGAGAGGATGTCACTTaGTCTCTAGAATCTTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: ATRKIFTLRQERKNLVYRGEDVT*SLESSG Trigger: ACCTGAAGATTCTAGAGACCAAGTGACATCCTCTCC...CCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| 3UTR TCA 72 bp | ATCTCCCATCTCGTTTTAATAGAGATTTTTCCAGGGTaGGTTGAAGCAAGAGTCTATAATTTAGGCCACAAG | + |
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Preference number: 3 (lower is better) Translates to: ISHLVLIEIFPG*VEARVYNLGHK Trigger: CTTGTGGCCTAAATTATAGACTCTTGCTTCAACTCACCCTGGAAAAATCTCTATTAAAACGAGATGGGAGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | CAGGAAAGGAAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGTGTTCAAGCCCACACTaGCATTCAGCAGGCAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: QERKNLVYRSLGRRGCHLCSSPH*HSAGKV Trigger: CACCTTGCCTGCTGAATGGCAGTGTGGGCTTGAACA...CAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | CAGGAAAGGAAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGTGGGTTTGGTGGTTCTaGGATGACCACTGGGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: QERKNLVYRSLGRRGCHLWVWWF*DDHWVC Trigger: GCAAACCCAGTGGTCATCCCAGAACCACCAAACCCA...CAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR TCA 90 bp | CAGGAAAGGAAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGACACACTTGCAATGCTaGGCTCCAAGAGGCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: QERKNLVYRSLGRRGCHLTHLQC*APRGRR Trigger: TCTTCTGCCTCTTGGAGCTCAGCATTGCAAGTGTGT...CAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | AAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGGTCTCTAGACCACATATACAGAATTaGCCATGGGGCCCGGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: KNLVYRSLGRRGCHLVSRPHIQN*PWGPVK Trigger: CTTCACCGGGCCCCATGGCCAATTCTGTATATGTGG...TCTAGAGACCAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | GCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGGCAGGCAAGGTGAATTaGGCTGAGTTTCTGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: ATRKIFTLRQERKNLVYRAGKVN*AEFLPP Trigger: TGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTGC...CCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR TCA 90 bp | CAGGAAAGGAAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGACCAAACCAGGCAGATaGCCAGAAATCACATGGACT | + |
|
Preference number: 4 (lower is better) Translates to: QERKNLVYRSLGRRGCHLTKPGR*PEITWT Trigger: AGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGT...CAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR TCA 90 bp | GCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGCAGAACAGATGGCGCTaGAGATGTTCAAGCCCACAC | + |
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Preference number: 4 (lower is better) Translates to: ATRKIFTLRQERKNLVYRQNRWR*RCSSPH Trigger: GTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTG...CCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGAAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGGTCTTTTTCAAGACTCTCTaGGCAGGCGGTTCGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: ERKNLVYRSLGRRGCHLVFFKTL*AGGSVI Trigger: TATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAA...GACCAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | CCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAGTGGGAGGACACACTTaGAATGCTGAGCTCCAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: PQERYLPFVRKGRTWFIGVGGHT*NAELQE Trigger: CTCTTGGAGCTCAGCATTGCAAGTGTGTCCTCCCAC...TCCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR TCA 90 bp | ACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAGTTTGGTGGTTCTGGGATaGCCACTGGGTTTGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: TRKIFTLRQERKNLVYRSLVVLG*PLGLLH Trigger: ATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAA...ACTCCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | AGGCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAACTTGGCAGCCAAAGTaGGAGGACACACTTGCAATG | + |
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Preference number: 4 (lower is better) Translates to: RPQERYLPFVRKGRTWFITWQPK*EDTLAM Trigger: CATTGCAAGTGTGTCCTCCCACTTTGGCTGCCAAGT...TATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | GCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAAGTTACTGTATTCATaGTTACTGTGCCCGGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: ATRKIFTLRQERKNLVYRKLLYS*LLCPVA Trigger: GGCAACCGGGCACAGTAAGCATGAATACAGTAACTT...CCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| 3UTR CAA 72 bp | AGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTaGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCAC | + |
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Preference number: 4 (lower is better) Translates to: RKIFTLRQERKN*VYRSLGRRGCH Trigger: GTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | AAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGGTCTCTAGATACTTCGGAATAACTTaGTATTGGGTTTGGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: KNLVYRSLGRRGCHLVSRYFGIT*YWVWWF Trigger: GAACCACCAAACCCAATACCAAGTTATTCCGAAGTA...TCTAGAGACCAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | ACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAGTCAAGTAAGTCTCTCTTaGTCCGGTTCCCAACTCTTT | + |
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Preference number: 4 (lower is better) Translates to: TRKIFTLRQERKNLVYRSQVSLS*SGSQLF Trigger: AAAGAGTTGGGAACCGGAGCAAGAGAGACTTACTTG...ACTCCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | AGGCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAATAACTGTTGGGCGGTaGCACCACATATACAGAATT | + |
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Preference number: 4 (lower is better) Translates to: RPQERYLPFVRKGRTWFIITVGR*HHIYRI Trigger: AATTCTGTATATGTGGTGGCACCGCCCAACAGTTAT...TATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR GCA 90 bp | AGGCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGATGACCACTGGGTTTaGTGCATAGACATTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: RPQERYLPFVRKGRTWFIDDHWV*CIDIWN Trigger: ATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATC...TATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | GTCTATAATTTAGGCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAATTCTGGGATGACCACTaGGTTTGCTGCATAGACATT | + |
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Preference number: 4 (lower is better) Translates to: VYNLGHKKDIYPSSGKEEFWDDH*VCCIDI Trigger: AATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAA...TTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGCCTAAATTATAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CCA 90 bp | AGGCCACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAATAACTTGGTATTaGGTTTGGTGGTTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: RPQERYLPFVRKGRTWFIGITWY*VWWFWD Trigger: ATCCCAGAACCACCAAACCCAATACCAAGTTATTCC...TATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGTGGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | ATCATGATGGAGCCCAGGCCGATGTGCACCAGGCCGATCAGGATCTaGATGGCCCCTAGGACTTGTCCCTTTTTCAAGACTCTCTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: IMMEPRPMCTRPIRI*MAPRTCPFFKTLWA Trigger: TGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGGCCATCCAGATCCTGATCGGCCTGGTGCACATCGGCCTGGGCTCCATCATGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS TCA 90 bp | GTTGGGCGGTGCCACCACATATACAGAATTGGCCATGGGGCCCGGTaGAGTTACTGTATTCATGCTTACTGTGCCCGGTTGCCAAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: VGRCHHIYRIGHGAR*SYCIHAYCARLPSK Trigger: CTTACTTGGCAACCGGGCACAGTAAGCATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 90 bp | GCCCGGTTGCCAAGTAAGTCTCTCTTGCTCCGGTTCCCAACTCTTTaGTGTAGAAAACTTACTCCCCGAGAGATTGACTGCACCCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: ARLPSKSLLLRFPTL*CRKLTPREIDCTLC Trigger: GCACAGGGTGCAGTCAATCTCTCGGGGAGTAAGTTTTCTACAGCAAAGAGTTGGGAACCGGAGCAAGAGAGACTTACTTGGCAACCGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | CAGGATAACTGTTGGGCGGTGCCACCACATATACAGAATTGGCCATaGGGCCCGGTGAAGTTACTGTATTCATGCTTACTGTGCCCGGTT | + |
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Preference number: 5 (lower is better) Translates to: QDNCWAVPPHIQNWP*GPVKLLYSCLLCPV Trigger: AACCGGGCACAGTAAGCATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | GGACCACAGGATAACTGTTGGGCGGTGCCACCACATATACAGAATTaGCCATGGGGCCCGGTGAAGTTACTGTATTCATGCTTACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GPQDNCWAVPPHIQN*PWGPVKLLYSCLLC Trigger: GCACAGTAAGCATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | TTGAGGCTGATTGCTGGGATAAATAGGCATCTGAGGCACGGTTCCTaGGACCACAGGATAACTGTTGGGCGGTGCCACCACATATACAGA | + |
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Preference number: 5 (lower is better) Translates to: LRLIAGINRHLRHGS*DHRITVGRCHHIYR Trigger: TCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | GTTTGGTGGTTCTGGGATGACCACTGGGTTTGCTGCATAGACATTTaGAATGACCACACCTGGATTGTTGTAGTGACAACAGGCCACTTG | + |
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Preference number: 5 (lower is better) Translates to: VWWFWDDHWVCCIDI*NDHTWIVVVTTGHL Trigger: CAAGTGGCCTGTTGTCACTACAACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CAA 90 bp | AAGAACTTGGTTTATAGGAGTCTAGGTAGGAGAGGATGTCACTTGGTCTCTAGAGTGACAACAGGCCACTaGGCAGCCAAAGTGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: KNLVYRSLGRRGCHLVSRVTTGH*AAKVGG Trigger: TCCTCCCACTTTGGCTGCCAAGTGGCCTGTTGTCAC...TCTAGAGACCAAGTGACATCCTCTCCTACCTAGACTCCTATAAACCAAGTTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 90 bp | ACTTGGTATTGGGTTTGGTGGTTCTGGGATGACCACTGGGTTTGCTaGATAGACATTTGGAATGACCACACCTGGATTGTTGTAGTGACA | + |
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Preference number: 5 (lower is better) Translates to: TWYWVWWFWDDHWVC*IDIWNDHTWIVVVT Trigger: TGTCACTACAACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 90 bp | ATAACTTGGTATTGGGTTTGGTGGTTCTGGGATGACCACTGGGTTTaGTGCATAGACATTTGGAATGACCACACCTGGATTGTTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: ITWYWVWWFWDDHWV*CIDIWNDHTWIVVV Trigger: CACTACAACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | TTCGGAATAACTTGGTATTGGGTTTGGTGGTTCTGGGATGACCACTaGGTTTGCTGCATAGACATTTGGAATGACCACACCTGGATTGTT | + |
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Preference number: 5 (lower is better) Translates to: FGITWYWVWWFWDDH*VCCIDIWNDHTWIV Trigger: AACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | GTCTTGAACTACTTCGGAATAACTTGGTATTGGGTTTGGTGGTTCTaGGATGACCACTGGGTTTGCTGCATAGACATTTGGAATGACCAC | + |
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Preference number: 5 (lower is better) Translates to: VLNYFGITWYWVWWF*DDHWVCCIDIWNDH Trigger: GTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | TCTGGAGTCTTGAACTACTTCGGAATAACTTGGTATTGGGTTTGGTaGTTCTGGGATGACCACTGGGTTTGCTGCATAGACATTTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: SGVLNYFGITWYWVW*FWDDHWVCCIDIWN Trigger: ATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAAGACTCCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 90 bp | TTATCTGGAGTCTTGAACTACTTCGGAATAACTTGGTATTGGGTTTaGTGGTTCTGGGATGACCACTGGGTTTGCTGCATAGACATTTGG | + |
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Preference number: 5 (lower is better) Translates to: LSGVLNYFGITWYWV*WFWDDHWVCCIDIW Trigger: CCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAAGACTCCAGATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS-3UTR CAA 90 bp | ACAAGAAAGATATTTACCCTTCGTCAGGAAAGGAAGAACTTGGTTTATAGGAGTCGGAATAACTTGGTATaGGGTTTGGTGGTTCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: TRKIFTLRQERKNLVYRSRNNLV*GLVVLG Trigger: TCCCAGAACCACCAAACCCAATACCAAGTTATTCCG...ACTCCTATAAACCAAGTTCTTCCTTTCCTGACGAAGGGTAAATATCTTTCTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 72 bp | CACGGTTCCTGGGACCACAGGATAACTGTTGGGCGGTaGCACCACATATACAGAATTGGCCATGGGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: HGSWDHRITVGR*HHIYRIGHGAR Trigger: CCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TCTGAGGCACGGTTCCTGGGACCACAGGATAACTGTTaGGCGGTGCCACCACATATACAGAATTGGCCATGG | + |
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Preference number: 6 (lower is better) Translates to: SEARFLGPQDNC*AVPPHIQNWPW Trigger: CCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | ATTGCTGGGATAAATAGGCATCTGAGGCACGGTTCCTaGGACCACAGGATAACTGTTGGGCGGTGCCACCAC | + |
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Preference number: 6 (lower is better) Translates to: IAGINRHLRHGS*DHRITVGRCHH Trigger: GTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS TCA 72 bp | CCCACACTGCCATTCAGCAGGCAAGGTGAATTGGGCTaGGTTTCTGCCGCCACTGAGAGAGATCCTGAAATG | + |
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Preference number: 6 (lower is better) Translates to: PTLPFSRQGELG*VSAATERDPEM Trigger: CATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTGCTGAATGGCAGTGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TGTTGGGCGGTGCCACCACATATACAGAATTGGCCATaGGGCCCGGTGAAGTTACTGTATTCATGCTTACTG | + |
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Preference number: 6 (lower is better) Translates to: CWAVPPHIQNWP*GPVKLLYSCLL Trigger: CAGTAAGCATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | GATAACTGTTGGGCGGTGCCACCACATATACAGAATTaGCCATGGGGCCCGGTGAAGTTACTGTATTCATGC | + |
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Preference number: 6 (lower is better) Translates to: DNCWAVPPHIQN*PWGPVKLLYSC Trigger: GCATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 72 bp | TGGGTTTGGTGGTTCTGGGATGACCACTGGGTTTGCTaGATAGACATTTGGAATGACCACACCTGGATTGTT | + |
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Preference number: 6 (lower is better) Translates to: WVWWFWDDHWVC*IDIWNDHTWIV Trigger: AACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CAA 72 bp | CACCAAACCAGGCAGATGACCAGAAATCACATGGACTaGAGGCTGATTGCTGGGATAAATAGGCATCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: HQTRQMTRNHMD*RLIAGINRHLR Trigger: CCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 72 bp | ATGCTTACTGTGCCCGGTTGCCAAGTAAGTCTCTCTTaGTCCGGTTCCCAACTCTTTGCTGTAGAAAACTTA | + |
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Preference number: 6 (lower is better) Translates to: MLTVPGCQVSLS*SGSQLFAVENL Trigger: TAAGTTTTCTACAGCAAAGAGTTGGGAACCGGAGCAAGAGAGACTTACTTGGCAACCGGGCACAGTAAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS GCA 72 bp | TATTGGGTTTGGTGGTTCTGGGATGACCACTGGGTTTaGTGCATAGACATTTGGAATGACCACACCTGGATT | + |
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Preference number: 6 (lower is better) Translates to: YWVWWFWDDHWV*CIDIWNDHTWI Trigger: AATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TCTGGAGTCTTGAACTACTTCGGAATAACTTGGTATTaGGTTTGGTGGTTCTGGGATGACCACTGGGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: SGVLNYFGITWY*VWWFWDDHWVC Trigger: GCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAAGACTCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TTCTGGGATGACCACTGGGTTTGCTGCATAGACATTTaGAATGACCACACCTGGATTGTTGTAGTGACAACA | + |
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Preference number: 6 (lower is better) Translates to: FWDDHWVCCIDI*NDHTWIVVVTT Trigger: TGTTGTCACTACAACAATCCAGGTGTGGTCATTCCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TACTTCGGAATAACTTGGTATTGGGTTTGGTGGTTCTaGGATGACCACTGGGTTTGCTGCATAGACATTTGG | + |
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Preference number: 6 (lower is better) Translates to: YFGITWYWVWWF*DDHWVCCIDIW Trigger: CCAAATGTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | TTGAACTACTTCGGAATAACTTGGTATTGGGTTTGGTaGTTCTGGGATGACCACTGGGTTTGCTGCATAGAC | + |
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Preference number: 6 (lower is better) Translates to: LNYFGITWYWVW*FWDDHWVCCID Trigger: GTCTATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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| CDS CCA 72 bp | GTCTTGAACTACTTCGGAATAACTTGGTATTGGGTTTaGTGGTTCTGGGATGACCACTGGGTTTGCTGCATA | + |
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Preference number: 6 (lower is better) Translates to: VLNYFGITWYWV*WFWDDHWVCCI Trigger: TATGCAGCAAACCCAGTGGTCATCCCAGAACCACCAAACCCAATACCAAGTTATTCCGAAGTAGTTCAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025636.8 |
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