Pregenerated sensors for MS4A6D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024679Ensembl transcript IDs: ENSMUST00000025582.11, ENSMUST00000125291.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCCTAGTCAGTACCTCCTaGAGCCAAGTGACAAGGATA | + |
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Preference number: 2 (lower is better) Translates to: TCFHVLMNKIDAMKSMPRLVSTS*SQVTRI Trigger: TATCCTTGTCACTTGGCTGCAGGAGGTACTGACTAG...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| 3UTR-3UTR TCA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCTCCACCATGATCCTATaGAACATTCTTCCAGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: TCFHVLMNKIDAMKSMPRSTMIL*NILPVF Trigger: AAAAACTGGAAGAATGTTTCATAGGATCATGGTGGA...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| 3UTR TCA 72 bp | CTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTaGCGCCAAATCAAGAGCGTGCTACTGAACCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LHKLEFTGLCFD*RQIKSVLLNPA Trigger: GGCTGGGTTCAGTAGCACGCTCTTGATTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CCA 90 bp | GACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATCACTCTGGTGGGAAGGCTaGGGTTTGTCTGTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: DHYINWNLQVCVLTDAKSLWWEG*GLSVWG Trigger: TCCCCAAACAGACAAACCCCAGCCTTCCCACCAGAG...TGATTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CCA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCCTGTCTTGGCTCTGGTaGGAAGGCTGGGGTTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: TCFHVLMNKIDAMKSMPRLSWLW*EGWGLS Trigger: AGACAAACCCCAGCCTTCCCACCAGAGCCAAGACAG...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CCA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAAAGGCTGTCTTGGCTCTaGTGGGAAGGCTGGGGTTTG | + |
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Preference number: 4 (lower is better) Translates to: FDHYINWNLQVCVLTDAKRLSWL*WEGWGL Trigger: CAAACCCCAGCCTTCCCACCAGAGCCAAGACAGCCT...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CCA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATTCTTCAGGCTGTCTTaGCTCTGGTGGGAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FDHYINWNLQVCVLTDAKFFRLS*LWWEGW Trigger: CCAGCCTTCCCACCAGAGCCAAGACAGCCTGAAGAA...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR TCA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAAAGGGCTAGGCTGCTGTaGACCAAAGGCTTAGTCATC | + |
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Preference number: 4 (lower is better) Translates to: FDHYINWNLQVCVLTDAKRARLL*TKGLVI Trigger: GATGACTAAGCCTTTGGTTCACAGCAGCCTAGCCCT...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR GCA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCGCCAGCTTACATTGCTaGAAGGCAGGCTCTAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: TCFHVLMNKIDAMKSMPRASLHC*KAGSKA Trigger: TGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGC...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR TCA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCGAACAGATGCCAAAATaGTTCCCAGAGCCAACACCA | + |
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Preference number: 4 (lower is better) Translates to: TCFHVLMNKIDAMKSMPREQMPK*FPEPTP Trigger: TGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTC...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR TCA 90 bp | GACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATCATTGGTGAAATCACTGTaGCAGTCTCACTGGTCACTA | + |
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Preference number: 4 (lower is better) Translates to: DHYINWNLQVCVLTDAKSLVKSL*QSHWSL Trigger: TAGTGACCAGTGAGACTGTCACAGTGATTTCACCAA...TGATTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR GCA 90 bp | TACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATCAAGAGCGATTGGAGGGAACAGATaGCAAAATGATTCCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: YINWNLQVCVLTDAKSRAIGGNR*QNDSQS Trigger: GCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAAT...CGCTCTTGATTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR TCA 90 bp | GACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATCACTGTTTGGGGAAAGCTaGTTCCATTTGGTGAAATCA | + |
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Preference number: 4 (lower is better) Translates to: DHYINWNLQVCVLTDAKSLFGES*FHLVKS Trigger: TGATTTCACCAAATGGAATCAGCTTTCCCCAAACAG...TGATTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR TCA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAAGCTCCAACACACTGCTaGTTAGCATCAGTGAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: FDHYINWNLQVCVLTDAKAPTHC*LASVKR Trigger: TCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGC...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS TCA 90 bp | GGAAGGCTGGGGTTTGTCTGTTTGGGGAAAGCTGATTCCATTTGGTaGAATCACTGTGACAGTCTCACTGGTCACTACTTGTGGAATCAT | + |
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Preference number: 5 (lower is better) Translates to: GRLGFVCLGKADSIW*NHCDSLTGHYLWNH Trigger: ATGATTCCACAAGTAGTGACCAGTGAGACTGTCACAGTGATTTCACCAAATGGAATCAGCTTTCCCCAAACAGACAAACCCCAGCCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CAA 90 bp | CTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCACACAGAATATGATCTGGGAAGGCTGGGGTTaGTCTGTTTGGGGAAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LMNKIDAMKSMPRTQNMIWEGWG*SVWGKL Trigger: CAGCTTTCCCCAAACAGACAAACCCCAGCCTTCCCA...GATCATATTCTGTGTGCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CAA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAATTTCTTCAGGCTGTCTaGGCTCTGGTGGGAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: FDHYINWNLQVCVLTDAKFLQAV*ALVGRL Trigger: CAGCCTTCCCACCAGAGCCAAGACAGCCTGAAGAAA...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CAA 90 bp | TTTGACCACTACATAAATTGGAATTTACAGGTCTGTGTTTTGACTGACGCCAAACCAGTCAGAGCAGCTTaGGCCACGAAGCAGCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: FDHYINWNLQVCVLTDAKPVRAA*ATKQLF Trigger: AAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACTGG...TTTGGCGTCAGTCAAAACACAGACCTGTAAATTCCAATTTATGTAGTGGTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CAA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCGAGGTAAAGTGTAGATaGGAGGGAACAGATGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: TCFHVLMNKIDAMKSMPREVKCR*EGTDAK Trigger: TTTGGCATCTGTTCCCTCCAATCTACACTTTACCTC...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS-3UTR CAA 90 bp | ACTTGTTTTCATGTGCTTATGAATAAAATAGATGCCATGAAGTCCATGCCACGCCACTGGATTTATTCTTaGAGTTCTGAGACAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: TCFHVLMNKIDAMKSMPRHWIYS*SSETGK Trigger: TTTTCCTGTCTCAGAACTCAAAGAATAAATCCAGTG...GCGTGGCATGGACTTCATGGCATCTATTTTATTCATAAGCACATGAAAACAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS TCA 72 bp | GAGAGGACACTCAGGATGCTCAGGGCTAGGCTGCTGTaGACCAAAGGCTTAGTCATCTTTTTCTCTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: ERTLRMLRARLL*TKGLVIFFSVT Trigger: TGTCACAGAGAAAAAGATGACTAAGCCTTTGGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS GCA 72 bp | TGGGTTGTGTCTAGTTGTGTGAAAGCCAGCTTACATTaGTGCAAGGCAGGCTCTAAAGCAGCCAAACTGACA | + |
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Preference number: 6 (lower is better) Translates to: WVVSSCVKASLH*CKAGSKAAKLT Trigger: TGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025582.11 ENSMUST00000125291.3 |
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| CDS CAA 72 bp | ATTAGCATCAGTGAAAAGACTCCAGTCAGAGCAGCTTaGGCCACGAAGCAGCTGTTTAATGGCTCAGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: ISISEKTPVRAA*ATKQLFNGSGL Trigger: TAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACTGGAGTCTTTTCACTGATGCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025582.11 ENSMUST00000125291.3 |
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| CDS CAA 72 bp | ATCACAGCACACATGATCTGGATTGCCGCCATCACTTaGATCTCAGCCTTTAGATGTTTCTTCAGGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: ITAHMIWIAAIT*ISAFRCFFRLS Trigger: AGACAGCCTGAAGAAACATCTAAAGGCTGAGATCAAAGTGATGGCGGCAATCCAGATCATGTGTGCTGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025582.11 |
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| CDS TCA 72 bp | AGAAATGATAAGCATCTTGGGTTGTGTCTAGTTGTGTaGAAGCCAGCTTACATTGCTGCAAGGCAGGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: RNDKHLGLCLVV*KPAYIAARQAL Trigger: TAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025582.11 ENSMUST00000125291.3 |
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