Pregenerated sensors for MS4A6C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079419Ensembl transcript IDs: ENSMUST00000165310.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCAAGCATTGCTACCCTGTGATGGTTGGATTTTCTGCATTATCATaGAGACATATCCTCTGCTGTATAGTTCCCACTTGTTTCGGGTAT | + |
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Preference number: 1 (lower is better) Translates to: SKHCYPVMVGFSALS*RHILCCIVPTCFGY Trigger: ATACCCGAAACAAGTGGGAACTATACAGCAGAGGATATGTCTTCATGATAATGCAGAAAATCCAACCATCACAGGGTAGCAATGCTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCGGTCTGGGCTTTGGCTaGAGCCAAGGTCATGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVGLGFG*SQGHEN Trigger: ATTTTCATGACCTTGGCTTCAGCCAAAGCCCAGACC...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCAGTTTGCCTGACCAATaGGCCTCTCTTTCCAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVSLPDQ*ASLSSD Trigger: ATCACTGGAAAGAGAGGCCCATTGGTCAGGCAAACT...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCAGCATTGCTACCCTGTaGTGGTTGGATTTTCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVSIATL*WLDFLH Trigger: ATGCAGAAAATCCAACCATCACAGGGTAGCAATGCT...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCTCCACTACAATGGCCTaGAACATTCTGTTTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVSTTMA*NILFGF Trigger: AAAACCAAACAGAATGTTTCAGGCCATTGTAGTGGA...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR GCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCAATCGTTCCTCATATaGACAGTTACAAAGTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVQSFLI*TVTKCL Trigger: AAGGCACTTTGTAACTGTGCATATGAGGAACGATTG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR GCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCTTCAACTTATACTGGTaGCCACTGTATGAACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVFNLYW*PLYEQS Trigger: AGACTGTTCATACAGTGGGCACCAGTATAAGTTGAA...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCCTTTGATTCCACATTaGCTTCATTATTGGAGTTAT | + |
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Preference number: 2 (lower is better) Translates to: SMNTLETSLHATSFYALVPLIPH*LHYWSY Trigger: ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCACCCACTCCCATTTTTaGGCCCTGGTGTTCCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: SMNTLETSLHATSFYALVTHSHF*ALVFPC Trigger: ACAGGGGAACACCAGGGCCAAAAAATGGGAGTGGGT...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCGGGGGCAAGAAAATGTaGTCCCTTTGCTCCACTACA | + |
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Preference number: 3 (lower is better) Translates to: SMNTLETSLHATSFYALVGGKKM*SLCSTT Trigger: TGTAGTGGAGCAAAGGGACAACATTTTCTTGCCCCC...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR TCA 72 bp | TGCTACCCTGTGATGGTTGGATTTTCTGCATTATCATaGAGACATATCCTCTGCTGTATAGTTCCCACTTGT | + |
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Preference number: 3 (lower is better) Translates to: CYPVMVGFSALS*RHILCCIVPTC Trigger: ACAAGTGGGAACTATACAGCAGAGGATATGTCTTCATGATAATGCAGAAAATCCAACCATCACAGGGTAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCGACTAGGTCATCTTTaGATACATATGCAGCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: SMNTLETSLHATSFYALVRLGHL*IHMQLE Trigger: CTCTAGCTGCATATGTATCAAAAGATGACCTAGTCG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCTGTATAGTTCCCACTaGTTTCGGGTATTTTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: SMNTLETSLHATSFYALVLYSSH*FRVFCF Trigger: AAAACAAAATACCCGAAACAAGTGGGAACTATACAG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| 3UTR CAA 72 bp | GCTGTTAATTGCAGGGGGCAAGAAAATGTTGTCCCTTaGCTCCACTACAATGGCCTGAAACATTCTGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: AVNCRGQENVVP*LHYNGLKHSVW Trigger: CCAAACAGAATGTTTCAGGCCATTGTAGTGGAGCAAAGGGACAACATTTTCTTGCCCCCTGCAATTAACAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGTTCTTCAGGCTGTCTTaGCTCTGTTGGGTAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SSYAQLQSAFDSTLASLLFFRLS*LCWVGW Trigger: CCAGCCTACCCAACAGAGGCAAGACAGCCTGAAGAA...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGCTCCTTGCTCTGCTTaGATTGCTCTGAGGCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SSYAQLQSAFDSTLASLLAPCSA*IALRQD Trigger: ATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGC...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCTAAGCTCCTTGCTCTaGTTGCATTGCTCTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SMNTLETSLHATSFYALVLSSLL*LHCSEA Trigger: TGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATCTCTGTTGGGTAGGCTaGGACTCGTCTTTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYLCWVG*DSSFWG Trigger: TCCCCAAAAAGACGAGTCCCAGCCTACCCAACAGAG...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATGAACAGATGCCAAAATaGTTCCCAGAGCCAACACTG | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYEQMPK*FPEPTL Trigger: CAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTC...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATGATGATCAGCATCACTaGAAGGGCTCCAGTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYDDQHH*KGSSQN Trigger: ATTCTGACTGGAGCCCTTTCAGTGATGCTGATCATC...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATGACAGGAGGAACAGATaGCAAAATGATTCCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYDRRNR*QNDSQS Trigger: GCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTC...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATTTGCTCTGCTTGCATTaGTCTGAGGCAGGATGCAAA | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYLLCLH*SEAGCK Trigger: TTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAA...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGTTGGTGAAATCGTTGTaGTGGTCTCATTGGTCACTA | + |
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Preference number: 4 (lower is better) Translates to: SSYAQLQSAFDSTLASLLLVKSL*WSHWSL Trigger: TAGTGACCAATGAGACCATCACAACGATTTCACCAA...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCCTTTTTGGGGAAAGTTaGTTCCATTTGGTGAAATCG | + |
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Preference number: 4 (lower is better) Translates to: SMNTLETSLHATSFYALVLFGES*FHLVKS Trigger: CGATTTCACCAAATGGAATCAACTTTCCCCAAAAAG...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGCAGGACAGAAAACACTaGGTTAAAATATGGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: SSYAQLQSAFDSTLASLLQDRKH*VKIWDR Trigger: CCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTG...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATGCCCACGAAAGCAAATaGAACACTCAGGATATTCAG | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYAHESK*NTQDIQ Trigger: CTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGC...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CCA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCTGGGACTCGTCTTTTTaGGGAAAGTTGATTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: SMNTLETSLHATSFYALVWDSSF*GKLIPF Trigger: AAATGGAATCAACTTTCCCCAAAAAGACGAGTCCCA...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR TCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATGTTGATTCCATTTGGTaGAATCGTTGTGATGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYVDSIW*NRCDGL Trigger: GAGACCATCACAACGATTTCACCAAATGGAATCAAC...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATACAGCACACATGATCTaGATTGCCACTATCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYTAHMI*IATITL Trigger: CAAAGTGATAGTGGCAATCCAGATCATGTGTGCTGT...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CCA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGTATTCAGAGTTAGGCTaGCATCTACCAAAGGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: SSYAQLQSAFDSTLASLLYSELG*HLPKVL Trigger: CAAAACCTTTGGTAGATGCCAGCCTAACTCTGAATA...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR GCA 90 bp | ATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGAGTTATACACATGATCTGGATTaGCACTATCACTTTGATCTC | + |
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Preference number: 4 (lower is better) Translates to: MHSYKVPLIPHWLHYWSYTHDLD*HYHFDL Trigger: GAGATCAAAGTGATAGTGGCAATCCAGATCATGTGT...ATAACTCCAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS GCA 90 bp | ATTAGACTAAGCTCCTTGCTCTGCTTGCATTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACAGAGATGATAATGATGCCCACGAAA | + |
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Preference number: 5 (lower is better) Translates to: IRLSSLLCLHCSEAG*KPARLTEMIMMPTK Trigger: TTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CAA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGCTGTCTTGCCTCTGTaGGGTAGGCTGGGACTCGTC | + |
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Preference number: 5 (lower is better) Translates to: SSYAQLQSAFDSTLASLLAVLPL*GRLGLV Trigger: GACGAGTCCCAGCCTACCCAACAGAGGCAAGACAGC...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CAA 90 bp | AGCATGAATACTCTTGAGACTTCATTGCATGCCACTAGTTTCTATGCACTAGTCAGCTCCTTGCTCTGCTaGCATTGCTCTGAGGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SMNTLETSLHATSFYALVSSLLC*HCSEAG Trigger: TCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCT...GACTAGTGCATAGAAACTAGTGGCATGCAATGAAGTCTCAAGAGTATTCATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS CCA 90 bp | GCCAAAATGATTCCCAGAGCCAACACTGTCACAGCACACATGATCTaGATTGCCACTATCACTTTGATCTCAGCCTTTAGATGTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: AKMIPRANTVTAHMI*IATITLISAFRCFF Trigger: GAAGAAACATCTAAAGGCTGAGATCAAAGTGATAGTGGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CAA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGGTTGTGATGGTCTCATaGGTCACTACCTGTGGAATC | + |
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Preference number: 5 (lower is better) Translates to: SSYAQLQSAFDSTLASLLVVMVS*VTTCGI Trigger: GATTCCACAGGTAGTGACCAATGAGACCATCACAAC...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CAA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGATTAGACTAAGCTCCTaGCTCTGCTTGCATTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SSYAQLQSAFDSTLASLLIRLSS*LCLHCS Trigger: AGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAAT...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS-3UTR CAA 90 bp | TCCTCATATGCACAGTTACAAAGTGCCTTTGATTCCACATTGGCTTCATTATTGTCTTTTTGGGGAAAGTaGATTCCATTTGGTGAAATC | + |
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Preference number: 5 (lower is better) Translates to: SSYAQLQSAFDSTLASLLSFWGK*IPFGEI Trigger: GATTTCACCAAATGGAATCAACTTTCCCCAAAAAGA...CAATAATGAAGCCAATGTGGAATCAAAGGCACTTTGTAACTGTGCATATGAGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS GCA 72 bp | AGCTCCTTGCTCTGCTTGCATTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACAGAGATGATAATGATG | + |
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Preference number: 6 (lower is better) Translates to: SSLLCLHCSEAG*KPARLTEMIMM Trigger: CATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS GCA 72 bp | TGTTCAATTAGACTAAGCTCCTTGCTCTGCTTGCATTaGTCTGAGGCAGGATGCAAACCAGCCAGGCTGACA | + |
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Preference number: 6 (lower is better) Translates to: CSIRLSSLLCLH*SEAGCKPARLT Trigger: TGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS CCA 72 bp | ATTCCCAGAGCCAACACTGTCACAGCACACATGATCTaGATTGCCACTATCACTTTGATCTCAGCCTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: IPRANTVTAHMI*IATITLISAFR Trigger: TCTAAAGGCTGAGATCAAAGTGATAGTGGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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| CDS CCA 72 bp | AAGCAAATGAAACACTCAGGATATTCAGAGTTAGGCTaGCATCTACCAAAGGTTTTGTTGACTTTCTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: KQMKHSGYSELG*HLPKVLLTFSP Trigger: CGGAGAGAAAGTCAACAAAACCTTTGGTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165310.3 |
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