Pregenerated sensors for MS4A6B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024677Ensembl transcript IDs: ENSMUST00000025580.10, ENSMUST00000161283.2, ENSMUST00000163078.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGGTCTAAGCTCCTTGCTCTGCAAGCACTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACAGAGATGATAATGATGCCCATGAAA | + |
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Preference number: 1 (lower is better) Translates to: VGLSSLLCKHCSEAG*KPARLTEMIMMPMK Trigger: TTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR TCA 90 bp | AATAAAACTCATGTCCTCACAGAACCAATCAATGCTCTTAACCTCTaGGACATCTCTGTAGCCTCTTATAAGAAGCGACAAAATGTCTCT | + |
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Preference number: 1 (lower is better) Translates to: NKTHVLTEPINALNL*DISVASYKKRQNVS Trigger: AGAGACATTTTGTCGCTTCTTATAAGAGGCTACAGAGATGTCTCAGAGGTTAAGAGCATTGATTGGTTCTGTGAGGACATGAGTTTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCCTGTCCAAGAATTGGTAGTAATGATATTCAGTTGGTCTAAGCTCCTTGCTTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACA | + |
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Preference number: 2 (lower is better) Translates to: VPVQELVVMIFSWSKLLACSEAG*KPARLT Trigger: TGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCA...AGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCCTACCCTGTGATGGTTaGAATTTCTGCATTATCATG | + |
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Preference number: 2 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCLPCDG*NFCIIM Trigger: CATGATAATGCAGAAATTCCAACCATCACAGGGTAG...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTTTTCCCCACTACAATaGCCTGAAACATTCTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCFSPLQ*PETFCL Trigger: CAAACAGAATGTTTCAGGCCATTGTAGTGGGGAAAA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| 3UTR-3UTR TCA 90 bp | CTAATAATAAAACTCATGTCCTCACAGAACCAATCAATGCTCTTAACCTCTGAGGTACCACTGAGGACTTaGTCTGTGCATAAAAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: LIIKLMSSQNQSMLLTSEVPLRT*SVHKSK Trigger: TTTGCTTTTATGCACAGATCAAGTCCTCAGTGGTAC...CTCAGAGGTTAAGAGCATTGATTGGTTCTGTGAGGACATGAGTTTTATTATTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| 3UTR GCA 72 bp | AGCTCCTTGCTCTGCAAGCACTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACAGAGATGATAATGATG | + |
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Preference number: 3 (lower is better) Translates to: SSLLCKHCSEAG*KPARLTEMIMM Trigger: CATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR GCA 72 bp | TATTCAGTTGGTCTAAGCTCCTTGCTCTGCAAGCACTaGTCTGAGGCAGGATGCAAACCAGCCAGGCTGACA | + |
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Preference number: 3 (lower is better) Translates to: YSVGLSSLLCKH*SEAGCKPARLT Trigger: TGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR-3UTR CAA 90 bp | TTCTTTTCTCTTTTAACAATCCCATCTAGCCAGAACAGACTTGGCGGCAAAGCAGTTGGTCTAAGCTCCTaGCTCTGCAAGCACTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: FFSLLTIPSSQNRLGGKAVGLSS*LCKHCS Trigger: AGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAAC...TGCTTTGCCGCCAAGTCTGTTCTGGCTAGATGGGATTGTTAAAAGAGAAAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR TCA 72 bp | GCTGACAGAGATGATAATGATGCCCATGAAAGCAAATaGAACACTCAGGATATTCAGAGTCAGGCTGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: ADRDDNDAHESK*NTQDIQSQAAV Trigger: GACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| 3UTR TCA 72 bp | CATGTCCTCACAGAACCAATCAATGCTCTTAACCTCTaGGACATCTCTGTAGCCTCTTATAAGAAGCGACAA | + |
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Preference number: 3 (lower is better) Translates to: HVLTEPINALNL*DISVASYKKRQ Trigger: TTGTCGCTTCTTATAAGAGGCTACAGAGATGTCTCAGAGGTTAAGAGCATTGATTGGTTCTGTGAGGACATG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| 3UTR TCA 72 bp | TGCTACCCTGTGATGGTTGGAATTTCTGCATTATCATaGAGACATATCTTCTGCGGTATAGTTCCATTTGTT | + |
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Preference number: 3 (lower is better) Translates to: CYPVMVGISALS*RHIFCGIVPFV Trigger: AACAAATGGAACTATACCGCAGAAGATATGTCTTCATGATAATGCAGAAATTCCAACCATCACAGGGTAGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| 3UTR CCA 72 bp | ACAATCACAAAAAGACTTTATTTTGAACCAACAACATaGAAACTTCTTCAGACTTCATTGCAGGTCCCTTGT | + |
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Preference number: 3 (lower is better) Translates to: TITKRLYFEPTT*KLLQTSLQVPC Trigger: ACAAGGGACCTGCAATGAAGTCTGAAGAAGTTTCCATGTTGTTGGTTCAAAATAAAGTCTTTTTGTGATTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | TTGGCTGAAGCCAAGGTCATGAAAATCAATAGGGTGCCAGTAATACACACATTCCTGCAAGCACTGCTCTaGGGCAGGATGCAAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: LAEAKVMKINRVPVIHTFLQALL*GRMQTS Trigger: GCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAG...GAATGTGTGTATTACTGGCACCCTATTGATTTTCATGACCTTGGCTTCAGCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCCTGCAAGCACTGCTCTaGGGCAGGATGCAAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCLQALL*GRMQTS Trigger: GCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAG...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCACCACAGCATGGCAGTaGGGACAGCCAGGCCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCTTAWQ*GQPGQV Trigger: AACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGT...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | TTGGCTGAAGCCAAGGTCATGAAAATCAATAGGGTGCCAGTAATACACACATTCTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACA | + |
|
Preference number: 4 (lower is better) Translates to: LAEAKVMKINRVPVIHTFCSEAG*KPARLT Trigger: TGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCA...GAATGTGTGTATTACTGGCACCCTATTGATTTTCATGACCTTGGCTTCAGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTGCTCTGAGGCAGGATaGAAACCAGCCAGGCTGACA | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCCSEAG*KPARLT Trigger: TGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | CTAATAATAAAACTCATGTCCTCACAGAACCAATCAATGCTCTTAACCTCTGAGACCACAGCATGGCAGTaGGGACAGCCAGGCCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LIIKLMSSQNQSMLLTSETTAWQ*GQPGQV Trigger: AACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGT...CTCAGAGGTTAAGAGCATTGATTGGTTCTGTGAGGACATGAGTTTTATTATTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTTCTTCAGGCTGTCTTaGCACTGGTGGAAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCFFRLS*HWWKGW Trigger: CCAGCCTTTCCACCAGTGGCAAGACAGCCTGAAGAA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCCACTGGTGGAAAGGCTaGGGTTTGTCTGTTTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCHWWKG*GLSVWG Trigger: TCCCCAAACAGACAAACCCCAGCCTTTCCACCAGTG...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| 3UTR CAA 72 bp | AGACTTGGCGGCAAAGCACTCGTTCCTGTCCAAGAATaGGTAGTAATGATATTCAGTTGGTCTAAGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: RLGGKALVPVQE*VVMIFSWSKLL Trigger: AAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| CDS-3UTR TCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCACTGATCAGCATCAGTaGAAAGACTCCAGCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCTDQHQ*KDSSQN Trigger: GTTCTGGCTGGAGTCTTTTCACTGATGCTGATCAGT...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | CAAATGAAACACTCAGGATATTCAGAGTCAGGCTGCTGTCTACCTGGAAGAAGCCAGCAAAATTTTTGTTaGCTTTGTCTCCGTGACGAT | + |
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Preference number: 4 (lower is better) Translates to: QMKHSGYSESGCCLPGRSQQNFC*LCLRDD Trigger: ATCGTCACGGAGACAAAGTCAACAAAAATTTTGCTG...GCTTCTTCCAGGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| CDS-3UTR GCA 90 bp | ATGTTCAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATATTCTTCAGGCTGTCTTaGCACTGGTGGAAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: MFKPQQVTRFTEKKKPKIFFRLS*HWWKGW Trigger: CCAGCCTTTCCACCAGTGGCAAGACAGCCTGAAGAA...TATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTGAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCACTAAGCTCCTTGCTCTaGAAGCACTGCTCTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSLSSLL*KHCSEA Trigger: TGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAG...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ATGTTCAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATACTAAGCTCCTTGCTCTaGAAGCACTGCTCTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: MFKPQQVTRFTEKKKPKILSSLL*KHCSEA Trigger: TGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAG...TATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTGAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCACTGTCTTGCCACTGGTaGAAAGGCTGGGGTTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSLSCHW*KGWGLS Trigger: AGACAAACCCCAGCCTTTCCACCAGTGGCAAGACAG...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCATTGCTCTGCAAGCACTaGTCTGAGGCAGGATGCAAA | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSLLCKH*SEAGCK Trigger: TTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAA...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | TTGGCTGAAGCCAAGGTCATGAAAATCAATAGGGTGCCAGTAATACACACATTCTGGGGTTTGTCTGTTTaGGGAAGACTCATTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: LAEAKVMKINRVPVIHTFWGLSV*GRLIPF Trigger: AAATGGAATGAGTCTTCCCCAAACAGACAAACCCCA...GAATGTGTGTATTACTGGCACCCTATTGATTTTCATGACCTTGGCTTCAGCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | CAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATATTTATCTGTCTTGCCACTGGTaGAAAGGCTGGGGTTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: QTTTSHKVYREEEAQNIYLSCHW*KGWGLS Trigger: AGACAAACCCCAGCCTTTCCACCAGTGGCAAGACAG...ATAAATATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCGCCCATGAAAGCAAATaGAACACTCAGGATATTCAG | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCAHESK*NTQDIQ Trigger: CTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGC...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCATTGGAGGGAACAGATaGCAAAATGATTCCCAGACT | + |
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Preference number: 4 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCIGGNR*QNDSQT Trigger: AGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAAT...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | TTGGCTGAAGCCAAGGTCATGAAAATCAATAGGGTGCCAGTAATACACACATTCGTTACAAAGTACCTTTaGTTCCATGTTGGAGTCATT | + |
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Preference number: 4 (lower is better) Translates to: LAEAKVMKINRVPVIHTFVTKYL*FHVGVI Trigger: AATGACTCCAACATGGAATCAAAGGTACTTTGTAAC...GAATGTGTGTATTACTGGCACCCTATTGATTTTCATGACCTTGGCTTCAGCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCAATTTGGCGAAATCATTaGCACAGTCTCACTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSIWRNH*HSLTGH Trigger: GTGACCAGTGAGACTGTGGCAATGATTTCGCCAAAT...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR GCA 90 bp | CTAATAATAAAACTCATGTCCTCACAGAACCAATCAATGCTCTTAACCTCTGAGATTTGGCGAAATCATTaGCACAGTCTCACTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LIIKLMSSQNQSMLLTSEIWRNH*HSLTGH Trigger: GTGACCAGTGAGACTGTGGCAATGATTTCGCCAAAT...CTCAGAGGTTAAGAGCATTGATTGGTTCTGTGAGGACATGAGTTTTATTATTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | CAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATATTTATGCCCATGAAAGCAAATaGAACACTCAGGATATTCAG | + |
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Preference number: 4 (lower is better) Translates to: QTTTSHKVYREEEAQNIYAHESK*NTQDIQ Trigger: CTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGC...ATAAATATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCAAAGACTCATTCCATTTaGCGAAATCATTGCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSKTHSI*RNHCHS Trigger: ACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTT...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | ATGTTCAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATAAAGACTCATTCCATTTaGCGAAATCATTGCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: MFKPQQVTRFTEKKKPKIKTHSI*RNHCHS Trigger: ACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTT...TATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTGAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR CCA 90 bp | AAGTTTGTGAGCTACCAAGTGTATGCTAATAATAAAACTCATGTCCTCACAGAATGGGGTTTGTCTGTTTaGGGAAGACTCATTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: KFVSYQVYANNKTHVLTEWGLSV*GRLIPF Trigger: AAATGGAATGAGTCTTCCCCAAACAGACAAACCCCA...TTCTGTGAGGACATGAGTTTTATTATTAGCATACACTTGGTAGCTCACAAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCATACCAAAATTTTTGTTaGCTTTGTCTCCGTGACGAT | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSYQNFC*LCLRDD Trigger: ATCGTCACGGAGACAAAGTCAACAAAAATTTTGGTA...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR TCA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCAGTTACAAAGTACCTTTaGTTCCATGTTGGAGTCATT | + |
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Preference number: 4 (lower is better) Translates to: ILSSKHCYPVMVGISALSVTKYL*FHVGVI Trigger: AATGACTCCAACATGGAATCAAAGGTACTTTGTAAC...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS TCA 90 bp | GAGGACAGCCAGGCCAAGTTCCAACATAGTACTGATCAGCATCAGTaGAAAGACTCCAGCCAGAACAGACTTGGCGGCAAAGCACTCGTT | + |
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Preference number: 5 (lower is better) Translates to: EDSQAKFQHSTDQHQ*KDSSQNRLGGKALV Trigger: AACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCTGGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CCA 90 bp | GTGGAAAGGCTGGGGTTTGTCTGTTTGGGGAAGACTCATTCCATTTaGCGAAATCATTGCCACAGTCTCACTGGTCACTACTTGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: VERLGFVCLGKTHSI*RNHCHSLTGHYLWN Trigger: ATTCCACAAGTAGTGACCAGTGAGACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTGGAAAGGCTGGGGTTaGTCTGTTTGGGGAAGACTC | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCWKGWG*SVWGRL Trigger: GAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTTTCTTCAGGCTGTCTaGCCACTGGTGGAAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCFLQAV*PLVERL Trigger: CAGCCTTTCCACCAGTGGCAAGACAGCCTGAAGAAA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCGTTGGTCTAAGCTCCTaGCTCTGCAAGCACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCVGLSS*LCKHCS Trigger: AGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAAC...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCACCAGCCAGAACAGACTaGGCGGCAAAGCACTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: ILSSKHCYPVMVGISALSPARTD*AAKHSF Trigger: GAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCTGG...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | TTGGCTGAAGCCAAGGTCATGAAAATCAATAGGGTGCCAGTAATACACACATTCCTGGGGTTTGTCTGTTaGGGGAAGACTCATTCCATT | + |
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Preference number: 5 (lower is better) Translates to: LAEAKVMKINRVPVIHTFLGFVC*GKTHSI Trigger: AATGGAATGAGTCTTCCCCAAACAGACAAACCCCAG...GAATGTGTGTATTACTGGCACCCTATTGATTTTCATGACCTTGGCTTCAGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | AAGTTTGTGAGCTACCAAGTGTATGCTAATAATAAAACTCATGTCCTCACAGAACCAGCCAGAACAGACTaGGCGGCAAAGCACTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: KFVSYQVYANNKTHVLTEPARTD*AAKHSF Trigger: GAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCTGG...TTCTGTGAGGACATGAGTTTTATTATTAGCATACACTTGGTAGCTCACAAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCCTGGGGTTTGTCTGTTaGGGGAAGACTCATTCCATT | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCLGFVC*GKTHSI Trigger: AATGGAATGAGTCTTCCCCAAACAGACAAACCCCAG...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCATGGAAAGGCTGGGGTTaGTCTGTTTGGGGAAGACTC | + |
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Preference number: 5 (lower is better) Translates to: ILSSKHCYPVMVGISALSWKGWG*SVWGRL Trigger: GAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCA...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCAGTTGGTCTAAGCTCCTaGCTCTGCAAGCACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: ILSSKHCYPVMVGISALSVGLSS*LCKHCS Trigger: AGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAAC...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | TGCAAACCAGCCAGGCTGACAGAGATGATAATGATGCCCATGAAAGCAAATGAAATGGTGCAGCAATTCTaGTTATTTGGCTTCATTAGC | + |
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Preference number: 5 (lower is better) Translates to: CKPARLTEMIMMPMKANEMVQQF*LFGFIS Trigger: GCTAATGAAGCCAAATAACAAGAATTGCTGCACCAT...TTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161283.2 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCTGTTGGAGTCATTATTaGAGCTATGTGGCAGGAACA | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCCWSHY*SYVAGT Trigger: TGTTCCTGCCACATAGCTCAAATAATGACTCCAACA...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ACTGATATGATAGAAGACCCACGTCATAGCAGAGATTCTGAATACAAAGACTGCACCTTTGATTCCATGTaGGAGTCATTATTTGAGCTA | + |
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Preference number: 5 (lower is better) Translates to: TDMIEDPRHSRDSEYKDCTFDSM*ESLFEL Trigger: TAGCTCAAATAATGACTCCAACATGGAATCAAAGGT...GCAGTCTTTGTATTCAGAATCTCTGCTATGACGTGGGTCTTCTATCATATCAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | AAGTTTGTGAGCTACCAAGTGTATGCTAATAATAAAACTCATGTCCTCACAGAATGTTGGAGTCATTATTaGAGCTATGTGGCAGGAACA | + |
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Preference number: 5 (lower is better) Translates to: KFVSYQVYANNKTHVLTECWSHY*SYVAGT Trigger: TGTTCCTGCCACATAGCTCAAATAATGACTCCAACA...TTCTGTGAGGACATGAGTTTTATTATTAGCATACACTTGGTAGCTCACAAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTAGCAAGCATTGCTACCCTGTGATGGTTGGAATTTCTGCATTATCAGGTTACAAAGTACCTTaGATTCCATGTTGGAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: ILSSKHCYPVMVGISALSGYKVP*IPCWSH Trigger: ATGACTCCAACATGGAATCAAAGGTACTTTGTAACC...TGATAATGCAGAAATTCCAACCATCACAGGGTAGCAATGCTTGCTACTTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS-3UTR CAA 90 bp | ATGTTCAAACCACAACAAGTCACAAGGTTTACAGAGAAGAAGAAGCCCAAAATAGGTTACAAAGTACCTTaGATTCCATGTTGGAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: MFKPQQVTRFTEKKKPKIGYKVP*IPCWSH Trigger: ATGACTCCAACATGGAATCAAAGGTACTTTGTAACC...TATTTTGGGCTTCTTCTTCTCTGTAAACCTTGTGACTTGTTGTGGTTTGAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163078.8 |
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| CDS CAA 90 bp | CTTCAGGCTGTCTTGCCACTGGTGGAAAGGCTGGGGTTTGTCTGTTaGGGGAAGACTCATTCCATTTGGCGAAATCATTGCCACAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LQAVLPLVERLGFVC*GKTHSIWRNHCHSL Trigger: GAGACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCACCAGTGGCAAGACAGCCTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CAA 72 bp | TTCAGGCTGTCTTGCCACTGGTGGAAAGGCTGGGGTTaGTCTGTTTGGGGAAGACTCATTCCATTTGGCGAA | + |
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Preference number: 6 (lower is better) Translates to: FRLSCHWWKGWG*SVWGRLIPFGE Trigger: TTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCACCAGTGGCAAGACAGCCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CCA 72 bp | TCTTGCCACTGGTGGAAAGGCTGGGGTTTGTCTGTTTaGGGAAGACTCATTCCATTTGGCGAAATCATTGCC | + |
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Preference number: 6 (lower is better) Translates to: SCHWWKGWGLSV*GRLIPFGEIIA Trigger: GGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCACCAGTGGCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CAA 72 bp | GTCTTGCCACTGGTGGAAAGGCTGGGGTTTGTCTGTTaGGGGAAGACTCATTCCATTTGGCGAAATCATTGC | + |
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Preference number: 6 (lower is better) Translates to: VLPLVERLGFVC*GKTHSIWRNHC Trigger: GCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCACCAGTGGCAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CAA 72 bp | ATCAGCATCAGTGAAAAGACTCCAGCCAGAACAGACTaGGCGGCAAAGCACTCGTTCCTGTCCAAGAATTGG | + |
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Preference number: 6 (lower is better) Translates to: ISISEKTPARTD*AAKHSFLSKNW Trigger: CCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCTGGAGTCTTTTCACTGATGCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS CAA 90 bp | GGTGGAAAGGCTGGGGTTTGTCTGTTTGGGGAAGACTCATTCCATTaGGCGAAATCATTGCCACAGTCTCACTGGTCACTACTTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: GGKAGVCLFGEDSFH*AKSLPQSHWSLLVE Trigger: TTCCACAAGTAGTGACCAGTGAGACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACAGACAAACCCCAGCCTTTCCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS TCA 72 bp | CAGGCCAAGTTCCAACATAGTACTGATCAGCATCAGTaGAAAGACTCCAGCCAGAACAGACTTGGCGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: QAKFQHSTDQHQ*KDSSQNRLGGK Trigger: TTTGCCGCCAAGTCTGTTCTGGCTGGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS GCA 72 bp | TGTTTGGGGAAGACTCATTCCATTTGGCGAAATCATTaGCACAGTCTCACTGGTCACTACTTGTGGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: CLGKTHSIWRNH*HSLTGHYLWNH Trigger: ATGATTCCACAAGTAGTGACCAGTGAGACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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| CDS TCA 72 bp | ATTCAGAGTCAGGCTGCTGTCTACCAAAATTTTTGTTaGCTTTGTCTCCGTGACGATGGACAGAATTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: IQSQAAVYQNFC*LCLRDDGQNSR Trigger: TCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTGGTAGACAGCAGCCTGACTCTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025580.10 ENSMUST00000163078.8 |
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