Pregenerated sensors for MS4A4D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024678

Ensembl transcript IDs: ENSMUST00000025581.7

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGCCATTCTTCACTCTTTaGAGACTTCACCTCACTAAA	+
Preference number: 2 (lower is better) Translates to: KVIHLLSYIVYVSVYDREPFFTL*RLHLTK Trigger: TTTAGTGAGGTGAAGTCTCCAAAGAGTGAAGAATGG...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGCAGGAACCACTGCCATaGTGGTCTGTGCCAGTCCTT	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREQEPLP*WSVPVL Trigger: AAGGACTGGCACAGACCACCATGGCAGTGGTTCCTG...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR TCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGTATAACAGAATTCTCTaGAGGTGGAGCACCTCCAGG	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREYNRIL*RWSTSR Trigger: CCTGGAGGTGCTCCACCTTCAGAGAATTCTGTTATA...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR GCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGGCCAATAATGCTTGCTaGCACAGCCAACACAGAACT	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREANNAC*HSQHRT Trigger: AGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGC...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR GCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGAGCTTTACACCCAAATaGAGAGACGGACACAGCAAT	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDRESFTPK*RDGHSN Trigger: ATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCT...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGCAAACTAGCGATGGCTaGTTGACTTCTAAATTGGCG	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREQTSDG*LTSKLA Trigger: CGCCAATTTAGAAGTCAACCAGCCATCGCTAGTTTG...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGGGAACATTTTTCCCTTaGCATTCTGATGGTGGCAAT	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREGTFFP*HSDGGN Trigger: ATTGCCACCATCAGAATGCCAAGGGAAAAATGTTCC...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR TCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGGGGATCCTGAGAAAATaGACATTATTGATCCCCAAA	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDREGILRK*TLLIPK Trigger: TTTGGGGATCAATAATGTTCATTTTCTCAGGATCCC...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR GCA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGAGACGGACACAGCAATaGAGAATTCTAGCATATTCA	+
Preference number: 4 (lower is better) Translates to: KVIHLLSYIVYVSVYDRERRTQQ*RILAYS Trigger: TGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCT...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS CCA 90 bp	TCACTGTCACAGCAGAATTTGATGGTAGCACTACAAGAACCTCACTaGAGTTACAACAGGAAGCTTTACACCCAAATGCAGAGACGGACA	+
Preference number: 5 (lower is better) Translates to: SLSQQNLMVALQEPH*SYNRKLYTQMQRRT Trigger: TGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGGTTCTTGTAGTGCTACCATCAAATTCTGCTGTGACAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CAA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGATAGCCCCGAGGACTTaGGGTTCCCCCTTCAAGAAT	+
Preference number: 5 (lower is better) Translates to: KVIHLLSYIVYVSVYDREIAPRT*GSPFKN Trigger: ATTCTTGAAGGGGGAACCCAAAGTCCTCGGGGCTAT...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CAA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGTCACTCCTGCTGCAATaGACAGGGATCCTGAGAAAA	+
Preference number: 5 (lower is better) Translates to: KVIHLLSYIVYVSVYDRESLLLQ*TGILRK Trigger: TTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGA...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CAA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGACTAGCGATGGCTGGTaGACTTCTAAATTGGCGAAA	+
Preference number: 5 (lower is better) Translates to: KVIHLLSYIVYVSVYDRETSDGW*TSKLAK Trigger: TTTCGCCAATTTAGAAGTCAACCAGCCATCGCTAGT...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS GCA 90 bp	TACAACAGGAAGCTTTACACCCAAATGCAGAGACGGACACAGCAATaGAGAATTCTAGCATATTCAAAATTGTCATCAAAACATCCAAAC	+
Preference number: 5 (lower is better) Translates to: YNRKLYTQMQRRTQQ*RILAYSKLSSKHPN Trigger: GTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS-3UTR CAA 90 bp	AAGGTAATACACCTGCTGTCTTACATAGTTTATGTGTCTGTATATGATCGTGAGGAAAGCAATCATAACTaGTATAGCCCCGAGGACTTT	+
Preference number: 5 (lower is better) Translates to: KVIHLLSYIVYVSVYDREESNHN*YSPEDF Trigger: AAAGTCCTCGGGGCTATACAAGTTATGATTGCTTTC...CTCACGATCATATACAGACACATAAACTATGTAAGACAGCAGGTGTATTACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS CCA 72 bp	CAGCAGAATTTGATGGTAGCACTACAAGAACCTCACTaGAGTTACAACAGGAAGCTTTACACCCAAATGCAG	+
Preference number: 6 (lower is better) Translates to: QQNLMVALQEPH*SYNRKLYTQMQ Trigger: CTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGGTTCTTGTAGTGCTACCATCAAATTCTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS CAA 72 bp	ATGAAAGCAATCATAACTTGTATAGCCCCGAGGACTTaGGGTTCCCCCTTCAAGAATTTCTCTTTGTTCTTG	+
Preference number: 6 (lower is better) Translates to: MKAIITCIAPRT*GSPFKNFSLFL Trigger: CAAGAACAAAGAGAAATTCTTGAAGGGGGAACCCAAAGTCCTCGGGGCTATACAAGTTATGATTGCTTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS CAA 72 bp	AATTGTCATCAAAACATCCAAACTAGCGATGGCTGGTaGACTTCTAAATTGGCGAAAAACACCAGAAATCAC	+
Preference number: 6 (lower is better) Translates to: NCHQNIQTSDGW*TSKLAKNTRNH Trigger: GTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCTAGTTTGGATGTTTTGATGACAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025581.7
CDS GCA 72 bp	AAGCTTTACACCCAAATGCAGAGACGGACACAGCAATaGAGAATTCTAGCATATTCAAAATTGTCATCAAAA	+
Preference number: 6 (lower is better) Translates to: KLYTQMQRRTQQ*RILAYSKLSSK Trigger: TTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025581.7