Pregenerated sensors for MS4A4C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024675Ensembl transcript IDs: ENSMUST00000072729.10, ENSMUST00000119366.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR CCA 90 bp | ACATATCTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTaGGACCAACTGTTCAAAGATGTGAGCCTTAGGGGAGATTACAGC | + |
Preference number: 1 (lower is better) Translates to: TYLKDSAIFQNNGTT*DQLFKDVSLRGDYS Trigger: GCTGTAATCTCCCCTAAGGCTCACATCTTTGAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAGATATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR TCA 90 bp | AAGCCAACCTTTAGTGATTTAGTTTCACAAGTTAGGCCACATATCTaGAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACC | + |
Preference number: 1 (lower is better) Translates to: KPTFSDLVSQVRPHI*KIQQSFKIMALLGT Trigger: GGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAGATATGTGGCCTAACTTGTGAAACTAAATCACTAAAGGTTGGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR TCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACAGCCCCAAAGAAATGTaGACGCCTTTCTTTAATCTT | + |
Preference number: 2 (lower is better) Translates to: LKVNVNNQLEGSVTFKANSPKEM*TPFFNL Trigger: AAGATTAAAGAAAGGCGTTCACATTTCTTTGGGGCT...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR TCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACTCATGTGTTTGTACATaGTCAAAAGCAGCTAAATCC | + |
Preference number: 2 (lower is better) Translates to: LKVNVNNQLEGSVTFKANSCVCT*SKAAKS Trigger: GGATTTAGCTGCTTTTGATCATGTACAAACACATGA...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR GCA 90 bp | GTAAATGTGTGTGTGTGTGTGTGTTTGTGTATTCTGATTTCAGTCACTTCTCTTAATTTCCCAGGGAAATaGATACACACACACACACAC | + |
Preference number: 2 (lower is better) Translates to: VNVCVCVCLCILISVTSLNFPGK*IHTHTH Trigger: GTGTGTGTGTGTGTGTATGCATTTCCCTGGGAAATT...AAGAGAAGTGACTGAAATCAGAATACACAAACACACACACACACACACATTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR GCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACTCTATAATCTCTACATaGACACCATACACGTACTAT | + |
Preference number: 2 (lower is better) Translates to: LKVNVNNQLEGSVTFKANSIIST*TPYTYY Trigger: ATAGTACGTGTATGGTGTGCATGTAGAGATTATAGA...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR TCA 72 bp | ATAATGGCACTACTTGGGACCAACTGTTCAAAGATGTaGGCCTTAGGGGAGATTACAGCACCAAACCACAGT | + |
Preference number: 3 (lower is better) Translates to: IMALLGTNCSKM*ALGEITAPNHS Trigger: ACTGTGGTTTGGTGCTGTAATCTCCCCTAAGGCTCACATCTTTGAACAGTTGGTCCCAAGTAGTGCCATTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR CAA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTTGTGTGTGTGTGTGTTaGTGTATTCTGATTTCAGTC | + |
Preference number: 3 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPCVCVC*CILISV Trigger: GACTGAAATCAGAATACACAAACACACACACACACA...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
3UTR-3UTR CAA 90 bp | GTAAATGTGTGTGTGTGTGTGTGTTTGTGTATTCTGATTTCAGTCACTTCTCTTGCTTTCAAAACATCTTaGCTAATTCATTGCCCCTTG | + |
Preference number: 3 (lower is better) Translates to: VNVCVCVCLCILISVTSLAFKTS*LIHCPL Trigger: CAAGGGGCAATGAATTAGCAAAGATGTTTTGAAAGC...AAGAGAAGTGACTGAAATCAGAATACACAAACACACACACACACACACATTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR GCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACAAGCGTCACAGGGGGTaGCATCACAGTCACAGCAGG | + |
Preference number: 4 (lower is better) Translates to: LKVNVNNQLEGSVTFKANKRHRG*HHSHSR Trigger: CCTGCTGTGACTGTGATGGCACCCCCTGTGACGCTT...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR CCA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCAGGAACCACTGCCATaGTGGTCTGTTCCTGTCCTT | + |
Preference number: 4 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPQEPLP*WSVPVL Trigger: AAGGACAGGAACAGACCACCATGGCAGTGGTTCCTG...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR TCA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCATAACAGAATTCTCTaGAGGTGGAGCACCTCCAGG | + |
Preference number: 4 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPHNRIL*RWSTSR Trigger: CCTGGAGGTGCTCCACCTTCAGAGAATTCTGTTATG...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR TCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACGGGATCCTGAGACAATaGACATTATTGGTCCCCAAA | + |
Preference number: 4 (lower is better) Translates to: LKVNVNNQLEGSVTFKANGILRQ*TLLVPK Trigger: TTTGGGGACCAATAATGTTCATTGTCTCAGGATCCC...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR CCA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTGGAACATTTTTCCCTTaGTGTTCTGATGGTGGCAAT | + |
Preference number: 4 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPGTFFP*CSDGGN Trigger: ATTGCCACCATCAGAACACCAAGGGAAAAATGTTCC...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR TCA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCGTTCCACATTTGTaGTTTCATAACAGAATTCTC | + |
Preference number: 4 (lower is better) Translates to: LKVNVNNQLEGSVTFKANLVPHL*FHNRIL Trigger: GAGAATTCTGTTATGAAATCACAAATGTGGAACGAG...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR GCA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTAGATGGACACAGCAATaGAGAATTCTAGCATATTTA | + |
Preference number: 4 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPRWTQQ*RILAYL Trigger: TAAATATGCTAGAATTCTGCATTGCTGTGTCCATCT...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR TCA 90 bp | CTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACCAACTGTTCTTAAGACCACAGAAATaGGTGGTTCAGAAGATAGAT | + |
Preference number: 4 (lower is better) Translates to: LKDSAIFQNNGTTWDQLFLRPQK*VVQKID Trigger: ATCTATCTTCTGAACCACTCATTTCTGTGGTCTTAA...GAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR CAA 90 bp | GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTTCACTCCTGCTGCAATaGACAGGGATCCTGAGACAA | + |
Preference number: 5 (lower is better) Translates to: ESQCEQSTGRQCHLQSQPSLLLQ*TGILRQ Trigger: TTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGA...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR CAA 90 bp | TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCAGTCACAGCAGGATTaGATGGTAGCACTACAAGAA | + |
Preference number: 5 (lower is better) Translates to: LKVNVNNQLEGSVTFKANQSQQD*MVALQE Trigger: TTCTTGTAGTGCTACCATCAAATCCTGCTGTGACTG...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS-3UTR CAA 90 bp | CTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACCAACTGTTCTTATTGGTCCCCAAATaGGAGCCATTAAGACCACAG | + |
Preference number: 5 (lower is better) Translates to: LKDSAIFQNNGTTWDQLFLLVPK*EPLRPQ Trigger: CTGTGGTCTTAATGGCTCCAATTTGGGGACCAATAA...GAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS CAA 72 bp | GCGTCACAGGGGGTGCCATCACAGTCACAGCAGGATTaGATGGTAGCACTACAAGAACCTCGCTGGAGTTAC | + |
Preference number: 6 (lower is better) Translates to: ASQGVPSQSQQD*MVALQEPRWSY Trigger: GTAACTCCAGCGAGGTTCTTGTAGTGCTACCATCAAATCCTGCTGTGACTGTGATGGCACCCCCTGTGACGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS TCA 72 bp | ACATTTTTCCCTTGGTGTTCTGATGGTGGCAATGGTTaGAGCGTCACAGGGGGTGCCATCACAGTCACAGCA | + |
Preference number: 6 (lower is better) Translates to: TFFPWCSDGGNG*SVTGGAITVTA Trigger: TGCTGTGACTGTGATGGCACCCCCTGTGACGCTTCAACCATTGCCACCATCAGAACACCAAGGGAAAAATGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000072729.10 ENSMUST00000119366.2 |
||
CDS CCA 72 bp | CAGCAGGATTTGATGGTAGCACTACAAGAACCTCGCTaGAGTTACAACAGGAAGCTTTACATCCAAAAGCAG | + |
Preference number: 6 (lower is better) Translates to: QQDLMVALQEPR*SYNRKLYIQKQ Trigger: CTGCTTTTGGATGTAAAGCTTCCTGTTGTAACTCCAGCGAGGTTCTTGTAGTGCTACCATCAAATCCTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072729.10 |
||
CDS TCA 72 bp | TCACTCCTGCTGCAATTGACAGGGATCCTGAGACAATaGACATTATTGGTCCCCAAATTGGAGCCATTAAGA | + |
Preference number: 6 (lower is better) Translates to: SLLLQLTGILRQ*TLLVPKLEPLR Trigger: TCTTAATGGCTCCAATTTGGGGACCAATAATGTTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072729.10 ENSMUST00000119366.2 |
||
CDS TCA 72 bp | TTGGTCCCCAAATTGGAGCCATTAAGACCACAGAAATaGGTGGTTCAGAAGATAGATTTGCCAAAATTATTA | + |
Preference number: 6 (lower is better) Translates to: LVPKLEPLRPQK*VVQKIDLPKLL Trigger: TAATAATTTTGGCAAATCTATCTTCTGAACCACTCATTTCTGTGGTCTTAATGGCTCCAATTTGGGGACCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072729.10 ENSMUST00000119366.2 |