RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MS4A4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024675

Ensembl transcript IDs: ENSMUST00000072729.10, ENSMUST00000119366.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACATATCTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTaGGACCAACTGTTCAAAGATGTGAGCCTTAGGGGAGATTACAGC +
Preference number: 1 (lower is better)
Translates to: TYLKDSAIFQNNGTT*DQLFKDVSLRGDYS
Trigger: GCTGTAATCTCCCCTAAGGCTCACATCTTTGAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAGATATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR TCA 90 bp AAGCCAACCTTTAGTGATTTAGTTTCACAAGTTAGGCCACATATCTaGAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACC +
Preference number: 1 (lower is better)
Translates to: KPTFSDLVSQVRPHI*KIQQSFKIMALLGT
Trigger: GGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAGATATGTGGCCTAACTTGTGAAACTAAATCACTAAAGGTTGGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR TCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACAGCCCCAAAGAAATGTaGACGCCTTTCTTTAATCTT +
Preference number: 2 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANSPKEM*TPFFNL
Trigger: AAGATTAAAGAAAGGCGTTCACATTTCTTTGGGGCT...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR TCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACTCATGTGTTTGTACATaGTCAAAAGCAGCTAAATCC +
Preference number: 2 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANSCVCT*SKAAKS
Trigger: GGATTTAGCTGCTTTTGATCATGTACAAACACATGA...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR GCA 90 bp GTAAATGTGTGTGTGTGTGTGTGTTTGTGTATTCTGATTTCAGTCACTTCTCTTAATTTCCCAGGGAAATaGATACACACACACACACAC +
Preference number: 2 (lower is better)
Translates to: VNVCVCVCLCILISVTSLNFPGK*IHTHTH
Trigger: GTGTGTGTGTGTGTGTATGCATTTCCCTGGGAAATT...AAGAGAAGTGACTGAAATCAGAATACACAAACACACACACACACACACATTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR GCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACTCTATAATCTCTACATaGACACCATACACGTACTAT +
Preference number: 2 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANSIIST*TPYTYY
Trigger: ATAGTACGTGTATGGTGTGCATGTAGAGATTATAGA...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR TCA 72 bp ATAATGGCACTACTTGGGACCAACTGTTCAAAGATGTaGGCCTTAGGGGAGATTACAGCACCAAACCACAGT +
Preference number: 3 (lower is better)
Translates to: IMALLGTNCSKM*ALGEITAPNHS
Trigger: ACTGTGGTTTGGTGCTGTAATCTCCCCTAAGGCTCACATCTTTGAACAGTTGGTCCCAAGTAGTGCCATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR CAA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTTGTGTGTGTGTGTGTTaGTGTATTCTGATTTCAGTC +
Preference number: 3 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPCVCVC*CILISV
Trigger: GACTGAAATCAGAATACACAAACACACACACACACA...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
3UTR-3UTR CAA 90 bp GTAAATGTGTGTGTGTGTGTGTGTTTGTGTATTCTGATTTCAGTCACTTCTCTTGCTTTCAAAACATCTTaGCTAATTCATTGCCCCTTG +
Preference number: 3 (lower is better)
Translates to: VNVCVCVCLCILISVTSLAFKTS*LIHCPL
Trigger: CAAGGGGCAATGAATTAGCAAAGATGTTTTGAAAGC...AAGAGAAGTGACTGAAATCAGAATACACAAACACACACACACACACACATTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR GCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACAAGCGTCACAGGGGGTaGCATCACAGTCACAGCAGG +
Preference number: 4 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANKRHRG*HHSHSR
Trigger: CCTGCTGTGACTGTGATGGCACCCCCTGTGACGCTT...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR CCA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCAGGAACCACTGCCATaGTGGTCTGTTCCTGTCCTT +
Preference number: 4 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPQEPLP*WSVPVL
Trigger: AAGGACAGGAACAGACCACCATGGCAGTGGTTCCTG...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR TCA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCATAACAGAATTCTCTaGAGGTGGAGCACCTCCAGG +
Preference number: 4 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPHNRIL*RWSTSR
Trigger: CCTGGAGGTGCTCCACCTTCAGAGAATTCTGTTATG...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR TCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACGGGATCCTGAGACAATaGACATTATTGGTCCCCAAA +
Preference number: 4 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANGILRQ*TLLVPK
Trigger: TTTGGGGACCAATAATGTTCATTGTCTCAGGATCCC...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR CCA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTGGAACATTTTTCCCTTaGTGTTCTGATGGTGGCAAT +
Preference number: 4 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPGTFFP*CSDGGN
Trigger: ATTGCCACCATCAGAACACCAAGGGAAAAATGTTCC...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR TCA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTCGTTCCACATTTGTaGTTTCATAACAGAATTCTC +
Preference number: 4 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANLVPHL*FHNRIL
Trigger: GAGAATTCTGTTATGAAATCACAAATGTGGAACGAG...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR GCA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTAGATGGACACAGCAATaGAGAATTCTAGCATATTTA +
Preference number: 4 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPRWTQQ*RILAYL
Trigger: TAAATATGCTAGAATTCTGCATTGCTGTGTCCATCT...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR TCA 90 bp CTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACCAACTGTTCTTAAGACCACAGAAATaGGTGGTTCAGAAGATAGAT +
Preference number: 4 (lower is better)
Translates to: LKDSAIFQNNGTTWDQLFLRPQK*VVQKID
Trigger: ATCTATCTTCTGAACCACTCATTTCTGTGGTCTTAA...GAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR CAA 90 bp GAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCTTCACTCCTGCTGCAATaGACAGGGATCCTGAGACAA +
Preference number: 5 (lower is better)
Translates to: ESQCEQSTGRQCHLQSQPSLLLQ*TGILRQ
Trigger: TTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGA...AGGTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR CAA 90 bp TTGAAAGTCAATGTGAACAATCAACTGGAAGGCAGTGTCACCTTCAAAGCCAACCAGTCACAGCAGGATTaGATGGTAGCACTACAAGAA +
Preference number: 5 (lower is better)
Translates to: LKVNVNNQLEGSVTFKANQSQQD*MVALQE
Trigger: TTCTTGTAGTGCTACCATCAAATCCTGCTGTGACTG...GTTGGCTTTGAAGGTGACACTGCCTTCCAGTTGATTGTTCACATTGACTTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS-3UTR CAA 90 bp CTGAAAGATTCAGCAATCTTTCAAAATAATGGCACTACTTGGGACCAACTGTTCTTATTGGTCCCCAAATaGGAGCCATTAAGACCACAG +
Preference number: 5 (lower is better)
Translates to: LKDSAIFQNNGTTWDQLFLLVPK*EPLRPQ
Trigger: CTGTGGTCTTAATGGCTCCAATTTGGGGACCAATAA...GAACAGTTGGTCCCAAGTAGTGCCATTATTTTGAAAGATTGCTGAATCTTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS CAA 72 bp GCGTCACAGGGGGTGCCATCACAGTCACAGCAGGATTaGATGGTAGCACTACAAGAACCTCGCTGGAGTTAC +
Preference number: 6 (lower is better)
Translates to: ASQGVPSQSQQD*MVALQEPRWSY
Trigger: GTAACTCCAGCGAGGTTCTTGTAGTGCTACCATCAAATCCTGCTGTGACTGTGATGGCACCCCCTGTGACGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS TCA 72 bp ACATTTTTCCCTTGGTGTTCTGATGGTGGCAATGGTTaGAGCGTCACAGGGGGTGCCATCACAGTCACAGCA +
Preference number: 6 (lower is better)
Translates to: TFFPWCSDGGNG*SVTGGAITVTA
Trigger: TGCTGTGACTGTGATGGCACCCCCTGTGACGCTTCAACCATTGCCACCATCAGAACACCAAGGGAAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000072729.10
ENSMUST00000119366.2
CDS CCA 72 bp CAGCAGGATTTGATGGTAGCACTACAAGAACCTCGCTaGAGTTACAACAGGAAGCTTTACATCCAAAAGCAG +
Preference number: 6 (lower is better)
Translates to: QQDLMVALQEPR*SYNRKLYIQKQ
Trigger: CTGCTTTTGGATGTAAAGCTTCCTGTTGTAACTCCAGCGAGGTTCTTGTAGTGCTACCATCAAATCCTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072729.10
CDS TCA 72 bp TCACTCCTGCTGCAATTGACAGGGATCCTGAGACAATaGACATTATTGGTCCCCAAATTGGAGCCATTAAGA +
Preference number: 6 (lower is better)
Translates to: SLLLQLTGILRQ*TLLVPKLEPLR
Trigger: TCTTAATGGCTCCAATTTGGGGACCAATAATGTTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072729.10
ENSMUST00000119366.2
CDS TCA 72 bp TTGGTCCCCAAATTGGAGCCATTAAGACCACAGAAATaGGTGGTTCAGAAGATAGATTTGCCAAAATTATTA +
Preference number: 6 (lower is better)
Translates to: LVPKLEPLRPQK*VVQKIDLPKLL
Trigger: TAATAATTTTGGCAAATCTATCTTCTGAACCACTCATTTCTGTGGTCTTAATGGCTCCAATTTGGGGACCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072729.10
ENSMUST00000119366.2