Pregenerated sensors for MS4A4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101389

Ensembl transcript IDs: ENSMUST00000188995.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATATGTACAGTAATATACATGGAAAGAATAAATGCCTGGGCTCAGTaGGCTGATTACGATCCCCGAGAAGGCAAACACGGAGCTGGTAAT	+
Preference number: 5 (lower is better) Translates to: ICTVIYMERINAWAQ*ADYDPREGKHGAGN Trigger: ATTACCAGCTCCGTGTTTGCCTTCTCGGGGATCGTAATCAGCTCACTGAGCCCAGGCATTTATTCTTTCCATGTATATTACTGTACATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188995.2
CDS TCA 90 bp	TCTGGAACATTTCTCTCTTGGTGTTCTGGTGGCATCAATCCACTTTaGAGTGTTACAGGATTTGCTGTCTCTGCCTTGGTAGGATTTGAT	+
Preference number: 5 (lower is better) Translates to: SGTFLSWCSGGINPL*SVTGFAVSALVGFD Trigger: ATCAAATCCTACCAAGGCAGAGACAGCAAATCCTGTAACACTTCAAAGTGGATTGATGCCACCAGAACACCAAGAGAGAAATGTTCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188995.2
CDS CCA 90 bp	CCAGCACACTTAAAACGACTACCACAATATCCAGACCCATTAAAATaGACAAGGTCATGTGACAGCCTTCTGATGAACCTCTATATGTAC	+
Preference number: 5 (lower is better) Translates to: PAHLKRLPQYPDPLK*TRSCDSLLMNLYMY Trigger: GTACATATAGAGGTTCATCAGAAGGCTGTCACATGACCTTGTCCATTTTAATGGGTCTGGATATTGTGGTAGTCGTTTTAAGTGTGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000188995.2
CDS TCA 72 bp	GTAATATACATGGAAAGAATAAATGCCTGGGCTCAGTaGGCTGATTACGATCCCCGAGAAGGCAAACACGGA	+
Preference number: 6 (lower is better) Translates to: VIYMERINAWAQ*ADYDPREGKHG Trigger: TCCGTGTTTGCCTTCTCGGGGATCGTAATCAGCTCACTGAGCCCAGGCATTTATTCTTTCCATGTATATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188995.2
CDS GCA 72 bp	ATTCCTATGCTGAGGTTCATGATGGCGATTACAATCTaGACAATCCCAAGGATTTTGGGTTCTCCCTTCAAG	+
Preference number: 6 (lower is better) Translates to: IPMLRFMMAITI*TIPRILGSPFK Trigger: CTTGAAGGGAGAACCCAAAATCCTTGGGATTGTGCAGATTGTAATCGCCATCATGAACCTCAGCATAGGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188995.2
CDS CCA 72 bp	TTAAAACGACTACCACAATATCCAGACCCATTAAAATaGACAAGGTCATGTGACAGCCTTCTGATGAACCTC	+
Preference number: 6 (lower is better) Translates to: LKRLPQYPDPLK*TRSCDSLLMNL Trigger: GAGGTTCATCAGAAGGCTGTCACATGACCTTGTCCATTTTAATGGGTCTGGATATTGTGGTAGTCGTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000188995.2

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