Pregenerated sensors for MS4A20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024729Ensembl transcript IDs: ENSMUST00000025635.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TCAGATTGCATCCTTTATTACAGAATGAGGAGACAGTaGGAACTGGCAAGGACATCATTGGAGTATGTTTCC | + |
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Preference number: 3 (lower is better) Translates to: SDCILYYRMRRQ*ELARTSLEYVS Trigger: GGAAACATACTCCAATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | CATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTGGAGCCAAGCATTATTTGTaGACCTCCCATTGCAATTGT | + |
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Preference number: 4 (lower is better) Translates to: HPLLQNEETVRTGKDIIGAKHYL*TSHCNC Trigger: ACAATTGCAATGGGAGGTGCACAAATAATGCTTGGC...TCCAATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | AGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCTTGTCTTCTAGATTGTaGAAAGAGAGCCAGAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: RLHPLLQNEETVRTGKDILSSRL*KESQRV Trigger: GACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAA...GATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | AGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCGCTGTTATGAACCAGTaGAGCACTAGGATTGCAATA | + |
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Preference number: 4 (lower is better) Translates to: RLHPLLQNEETVRTGKDIAVMNQ*STRIAI Trigger: TATTGCAATCCTAGTGCTGCACTGGTTCATAACAGC...GATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR TCA 90 bp | ATCAGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACTATACTGCTGGATCCTaGGTTGATGAAAAATGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IRLHPLLQNEETVRTGKDYTAGS*VDEKCS Trigger: GGAACATTTTTCATCAACTCAGGATCCAGCAGTATA...GTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR TCA 90 bp | TTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTTTTTATGTGCTGTTATaGACCAGTGCAGCACTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LHPLLQNEETVRTGKDIIFYVLL*TSAALG Trigger: TCCTAGTGCTGCACTGGTTCATAACAGCACATAAAA...AATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | AGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCTTTGTAGAAGCATCATaGCAGCCATATTTGACCAAA | + |
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Preference number: 4 (lower is better) Translates to: RLHPLLQNEETVRTGKDIFVEAS*QPYLTK Trigger: TTTGGTCAAATATGGCTGGCATGATGCTTCTACAAA...GATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CCA 90 bp | AGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCGCTAACATAAGTTTATaGCCGATGCTATATCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RLHPLLQNEETVRTGKDIANISL*PMLYLL Trigger: CAAGAGATATAGCATCGGCCATAAACTTATGTTAGC...GATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | CATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTGGATTGTGCACCTCCCATTaGAATTGTATCTTCTTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: HPLLQNEETVRTGKDIIGLCTSH*NCIFFY Trigger: ATAAAAGAAGATACAATTGCAATGGGAGGTGCACAA...TCCAATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR GCA 90 bp | ATCAGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACTTCTTCAATTTTATGTaGTGTTATGAACCAGTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IRLHPLLQNEETVRTGKDFFNFM*CYEPVQ Trigger: CTGCACTGGTTCATAACAGCACATAAAATTGAAGAA...GTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CCA 90 bp | CATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTGGATCTATATCTTTTGGATaGGATTGTTCAGAGACATTC | + |
|
Preference number: 4 (lower is better) Translates to: HPLLQNEETVRTGKDIIGSISFG*DCSETF Trigger: GAATGTCTCTGAACAATCCCATCCAAAAGATATAGA...TCCAATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CAA 90 bp | ATCAGATTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACCTCTTGTCTTCTAGATaGTGCAAAGAGAGCCAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: IRLHPLLQNEETVRTGKDLLSSR*CKESQR Trigger: TCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAG...GTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAATCTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS GCA 90 bp | ATTTCTTCTGAGGGTTCTTCAATTTTATGTGCTGTTATGAACCAGTaGAGCACTAGGATTGCAATAACCAGCTCTGTGATGGCACACATG | + |
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Preference number: 5 (lower is better) Translates to: ISSEGSSILCAVMNQ*STRIAITSSVMAHM Trigger: CATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CAA 90 bp | TTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTCTGCTGGATCCTGAGTaGATGAAAAATGTTCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: LHPLLQNEETVRTGKDIILLDPE*MKNVPD Trigger: GTCTGGAACATTTTTCATCAACTCAGGATCCAGCAG...AATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CAA 90 bp | TTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTCCGATGCTATATCTCTaGTCTTCTAGATTGTGCAAA | + |
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Preference number: 5 (lower is better) Translates to: LHPLLQNEETVRTGKDIIPMLYL*SSRLCK Trigger: TTTGCACAATCTAGAAGACAAGAGATATAGCATCGG...AATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CAA 90 bp | TTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTTCATGCCAGCCATATTaGACCAAATGTATTCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LHPLLQNEETVRTGKDIISCQPY*TKCIQF Trigger: GAACTGAATACATTTGGTCAAATATGGCTGGCATGA...AATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS-3UTR CAA 90 bp | TTGCATCCTTTATTACAGAATGAGGAGACAGTGAGAACTGGCAAGGACATCATTTTTGTGCACCTCCCATaGCAATTGTATCTTCTTTTA | + |
|
Preference number: 5 (lower is better) Translates to: LHPLLQNEETVRTGKDIIFVHLP*QLYLLL Trigger: TAAAAGAAGATACAATTGCAATGGGAGGTGCACAAA...AATGATGTCCTTGCCAGTTCTCACTGTCTCCTCATTCTGTAATAAAGGATGCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS CCA 72 bp | GATGGCTGTGTTGAAGGTGGTGATGATAGGTGTGAATaGGAGGGACCTGAGAAAATTTCTTCTGAGGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: DGCVEGGDDRCE*EGPEKISSEGS Trigger: AGAACCCTCAGAAGAAATTTTCTCAGGTCCCTCCCATTCACACCTATCATCACCACCTTCAACACAGCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS CAA 72 bp | AGTTTATGGCCGATGCTATATCTCTTGTCTTCTAGATaGTGCAAAGAGAGCCAGAGAGTCCCCAGTGCATTG | + |
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Preference number: 6 (lower is better) Translates to: SLWPMLYLLSSR*CKESQRVPSAL Trigger: CAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS GCA 72 bp | GAGGGTTCTTCAATTTTATGTGCTGTTATGAACCAGTaGAGCACTAGGATTGCAATAACCAGCTCTGTGATG | + |
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Preference number: 6 (lower is better) Translates to: EGSSILCAVMNQ*STRIAITSSVM Trigger: CATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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| CDS CAA 72 bp | CTAGCTAACATAAGTTTATGGCCGATGCTATATCTCTaGTCTTCTAGATTGTGCAAAGAGAGCCAGAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LANISLWPMLYL*SSRLCKESQRV Trigger: GACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025635.8 |
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