Pregenerated sensors for MS4A19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024728Ensembl transcript IDs: ENSMUST00000078770.5, ENSMUST00000180678.8, ENSMUST00000181284.8, ENSMUST00000181567.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCTCTTGAACAAAGTTCTTCACTCATCAACTCCTTGACTGAGGCCGTGATACTCCTCAGTTACTATGGATaGCATGAACAACTCCAACAT | + |
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Preference number: 4 (lower is better) Translates to: SLEQSSSLINSLTEAVILLSYYG*HEQLQH Trigger: ATGTTGGAGTTGTTCATGGCATCCATAGTAACTGAG...GAGTATCACGGCCTCAGTCAAGGAGTTGATGAGTGAAGAACTTTGTTCAAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS-3UTR GCA 90 bp | AGACTTGATAAAATACCACTTTCCAAGGTGTCTCTTGAACAAAGTTCTTCACTCCTCAGTTACTATGGATaGCATGAACAACTCCAACAT | + |
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Preference number: 4 (lower is better) Translates to: RLDKIPLSKVSLEQSSSLLSYYG*HEQLQH Trigger: ATGTTGGAGTTGTTCATGGCATCCATAGTAACTGAG...GAGTGAAGAACTTTGTTCAAGAGACACCTTGGAAAGTGGTATTTTATCAAGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS-3UTR GCA 90 bp | ATAAAATACCACTTTCCAAGGTGTCTCTTGAACAAAGTTCTTCACTCATCAACTCTCAGTTACTATGGATaGCATGAACAACTCCAACAT | + |
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Preference number: 4 (lower is better) Translates to: IKYHFPRCLLNKVLHSSTLSYYG*HEQLQH Trigger: ATGTTGGAGTTGTTCATGGCATCCATAGTAACTGAG...AGTTGATGAGTGAAGAACTTTGTTCAAGAGACACCTTGGAAAGTGGTATTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS-3UTR GCA 90 bp | TTGATAAAATACCACTTTCCAAGGTGTCTCTTGAACAAAGTTCTTCACTCATCACTCAGTTACTATGGATaGCATGAACAACTCCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: LIKYHFPRCLLNKVLHSSLSYYG*HEQLQH Trigger: ATGTTGGAGTTGTTCATGGCATCCATAGTAACTGAG...TGATGAGTGAAGAACTTTGTTCAAGAGACACCTTGGAAAGTGGTATTTTATCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS GCA 90 bp | TCATTTCGACTGTTGTTAAAAACAAACCAACTAGTGTTGCGAAGATaGTTAGGATATTCATTGTCATGGTCCAGATCAGCGTATGATTTG | + |
|
Preference number: 5 (lower is better) Translates to: SFRLLLKTNQLVLRR*LGYSLSWSRSAYDL Trigger: CAAATCATACGCTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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| CDS GCA 72 bp | TTGTCTTGCTCTATAGGTCCACTCAGTTACTATGGATaGCATGAACAACTCCAACATGCTGAACAGGAACAG | + |
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Preference number: 6 (lower is better) Translates to: LSCSIGPLSYYG*HEQLQHAEQEQ Trigger: CTGTTCCTGTTCAGCATGTTGGAGTTGTTCATGGCATCCATAGTAACTGAGTGGACCTATAGAGCAAGACAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS GCA 72 bp | CTGTTGTTAAAAACAAACCAACTAGTGTTGCGAAGATaGTTAGGATATTCATTGTCATGGTCCAGATCAGCG | + |
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Preference number: 6 (lower is better) Translates to: LLLKTNQLVLRR*LGYSLSWSRSA Trigger: CGCTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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| CDS GCA 72 bp | AACAGATATTCTGTAAGCACCCTGCCACTCTTATATTaGCACAGGGTAGAATATACACTTGAAGTCACTATC | + |
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Preference number: 6 (lower is better) Translates to: NRYSVSTLPLLY*HRVEYTLEVTI Trigger: GATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATATAAGAGTGGCAGGGTGCTTACAGAATATCTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078770.5 ENSMUST00000180678.8 ENSMUST00000181284.8 ENSMUST00000181567.8 |
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| CDS CAA 90 bp | AGATGCTTAGGATATTCATTGTCATGGTCCAGATCAGCGTATGATTaGAAGGCCTCTTCTGTAGTATTATTGATAAACTTCCTGATAGGC | + |
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Preference number: 6 (lower is better) Translates to: RCLGYSLSWSRSAYD*KASSVVLLINFLIG Trigger: GCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACGCTGATCTGGACCATGACAATGAATATCCTAAGCATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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| CDS CAA 90 bp | AAGTCACTATCATTTCGACTGTTGTTAAAAACAAACCAACTAGTGTaGCGAAGATGCTTAGGATATTCATTGTCATGGTCCAGATCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: KSLSFRLLLKTNQLV*RRCLGYSLSWSRSA Trigger: CGCTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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| CDS CAA 72 bp | GGATATTCATTGTCATGGTCCAGATCAGCGTATGATTaGAAGGCCTCTTCTGTAGTATTATTGATAAACTTC | + |
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Preference number: 6 (lower is better) Translates to: GYSLSWSRSAYD*KASSVVLLINF Trigger: GAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACGCTGATCTGGACCATGACAATGAATATCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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| CDS CAA 72 bp | TCATTTCGACTGTTGTTAAAAACAAACCAACTAGTGTaGCGAAGATGCTTAGGATATTCATTGTCATGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SFRLLLKTNQLV*RRCLGYSLSWS Trigger: GGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078770.5 |
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