RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MS4A15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067571

Ensembl transcript IDs: ENSMUST00000087923.4, ENSMUST00000144485.2, ENSMUST00000145110.3

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCTGCAGCCTCCTGTCCTAGTAGGTGGGCAGAGCCAGAGTCAATaGCAATCTTCTGTTACAAATAAGGAGAAGGAGGTTCCGGGGTGG +
Preference number: 1 (lower is better)
Translates to: PLQPPVLVGGQSQSQ*QSSVTNKEKEVPGW
Trigger: CCACCCCGGAACCTCCTTCTCCTTATTTGTAACAGAAGATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR GCA 90 bp AGGACAGAGCTGATCTTCGGAGCTAGGAGCCTGGAGGTCAAGCCTTaGTCTGAGCCTCTGAAATGCCAGTCTATTCTGGAACATTCTGAG +
Preference number: 1 (lower is better)
Translates to: RTELIFGARSLEVKP*SEPLKCQSILEHSE
Trigger: CTCAGAATGTTCCAGAATAGACTGGCATTTCAGAGGCTCAGAGCAAGGCTTGACCTCCAGGCTCCTAGCTCCGAAGATCAGCTCTGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 90 bp GGAAATGGATGGAACATGTCACTCAGTGACACAGTGCACATGGCTTaGAGAGTCTCGCTGGGAAACCGCTGCCTTAGAACGGACAAAGTG +
Preference number: 1 (lower is better)
Translates to: GNGWNMSLSDTVHMA*RVSLGNRCLRTDKV
Trigger: CACTTTGTCCGTTCTAAGGCAGCGGTTTCCCAGCGAGACTCTCCAAGCCATGTGCACTGTGTCACTGAGTGACATGTTCCATCCATTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CCA 90 bp GTTGGGGGAGTATGGAGTGGTTCAGTCTCCTCTGCAGCCTCCTGTCCTAGTAGGAGGGTGGAGAGGCTCTaGGTAAAGTGGGAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: VGGVWSGSVSSAASCPSRRVERL*VKWEAW
Trigger: CCAGGCTTCCCACTTTACCCAGAGCCTCTCCACCCT...CCTACTAGGACAGGAGGCTGCAGAGGAGACTGAACCACTCCATACTCCCCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CCA 90 bp GTTGGGGGAGTATGGAGTGGTTCAGTCTCCTCTGCAGCCTCCTGTCCTAGTAGGGTGACACAGTGCACATaGCTTGGAGAGTCTCGCTGG +
Preference number: 2 (lower is better)
Translates to: VGGVWSGSVSSAASCPSRVTQCT*LGESRW
Trigger: CCAGCGAGACTCTCCAAGCCATGTGCACTGTGTCAC...CCTACTAGGACAGGAGGCTGCAGAGGAGACTGAACCACTCCATACTCCCCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR TCA 90 bp ACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTATTAGAACGGACAAAGTaGGGGTGGAGAGGCTCTGGG +
Preference number: 2 (lower is better)
Translates to: TSAKPRFPTMSRGLRRSVLERTK*GWRGSG
Trigger: CCCAGAGCCTCTCCACCCTCACTTTGTCCGTTCTAA...TACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR TCA 90 bp ACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTAGAACATGTCACTCAGTaGCACAGTGCACATGGCTTG +
Preference number: 2 (lower is better)
Translates to: TSAKPRFPTMSRGLRRSVEHVTQ*HSAHGL
Trigger: CAAGCCATGTGCACTGTGTCACTGAGTGACATGTTC...TACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CCA 90 bp CTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTACGGGAGGAACTAGGAAATaGATGGAACATGTCACTCAG +
Preference number: 2 (lower is better)
Translates to: LCEAKISHDEQRTEEECTGGTRK*MEHVTQ
Trigger: CTGAGTGACATGTTCCATCCATTTCCTAGTTCCTCC...CGTACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CCA 90 bp AATGCTGGGATTAAAGGCGTGCGCCATCACGCCTTAGTCTTATGTGGTGTAGTTCTTGGAGAGTCTCGCTaGGAAACCGCTGCCTTAGAA +
Preference number: 2 (lower is better)
Translates to: NAGIKGVRHHALVLCGVVLGESR*ETAALE
Trigger: TTCTAAGGCAGCGGTTTCCCAGCGAGACTCTCCAAG...AACTACACCACATAAGACTAAGGCGTGATGGCGCACGCCTTTAATCCCAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR GCA 90 bp AATGCTGGGATTAAAGGCGTGCGCCATCACGCCTTAGTCTTATGTGGTGTAGTTAACCTCCGAAACCTCTaGGAAGCCAAGATTTCCCAC +
Preference number: 2 (lower is better)
Translates to: NAGIKGVRHHALVLCGVVNLRNL*EAKISH
Trigger: GTGGGAAATCTTGGCTTCGCAGAGGTTTCGGAGGTT...AACTACACCACATAAGACTAAGGCGTGATGGCGCACGCCTTTAATCCCAGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR TCA 90 bp ACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGTCCTGGAACTCACTCTGTAGATTCCGGGTGGGAAAATaGAATCCCAAAGATGTAACA +
Preference number: 2 (lower is better)
Translates to: TGFLCVALTVLSWNSLCRFRVGK*NPKDVT
Trigger: TGTTACATCTTTGGGATTTCATTTTCCCACCCGGAA...TCTACAGAGTGAGTTCCAGGACAGGACAGTCAGGGCTACACAGAGAAACCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp GGGCACTCCTGCTTTTCAGGCAGGGTTGGGGGAGTATaGAGTGGTTCAGTCTCCTCTGCAGCCTCCTGTCCT +
Preference number: 3 (lower is better)
Translates to: GHSCFSGRVGGV*SGSVSSAASCP
Trigger: AGGACAGGAGGCTGCAGAGGAGACTGAACCACTCCATACTCCCCCAACCCTGCCTGAAAAGCAGGAGTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR TCA 72 bp CATATGTCAGGGCCTGTGAACACTGGGCTGAAGTGGTaGCTCTCAGGGGCACTCCTGCTTTTCAGGCAGGGT +
Preference number: 3 (lower is better)
Translates to: HMSGPVNTGLKW*LSGALLLFRQG
Trigger: ACCCTGCCTGAAAAGCAGGAGTGCCCCTGAGAGTCACCACTTCAGCCCAGTGTTCACAGGCCCTGACATATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp TGCCTTAGAACGGACAAAGTGAGGGTGGAGAGGCTCTaGGTAAAGTGGGAAGCCTGGACTTCAACCTGCAGA +
Preference number: 3 (lower is better)
Translates to: CLRTDKVRVERL*VKWEAWTSTCR
Trigger: TCTGCAGGTTGAAGTCCAGGCTTCCCACTTTACCCAGAGCCTCTCCACCCTCACTTTGTCCGTTCTAAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp TGGAACATGTCACTCAGTGACACAGTGCACATGGCTTaGAGAGTCTCGCTGGGAAACCGCTGCCTTAGAACG +
Preference number: 3 (lower is better)
Translates to: WNMSLSDTVHMA*RVSLGNRCLRT
Trigger: CGTTCTAAGGCAGCGGTTTCCCAGCGAGACTCTCCAAGCCATGTGCACTGTGTCACTGAGTGACATGTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp GGTTCAGTCTCCTCTGCAGCCTCCTGTCCTAGTAGGTaGGCAGAGCCAGAGTCAATGCCAATCTTCTGTTAC +
Preference number: 3 (lower is better)
Translates to: GSVSSAASCPSR*AEPESMPIFCY
Trigger: GTAACAGAAGATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGGAGACTGAACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR GCA 72 bp CTGATCTTCGGAGCTAGGAGCCTGGAGGTCAAGCCTTaGTCTGAGCCTCTGAAATGCCAGTCTATTCTGGAA +
Preference number: 3 (lower is better)
Translates to: LIFGARSLEVKP*SEPLKCQSILE
Trigger: TTCCAGAATAGACTGGCATTTCAGAGGCTCAGAGCAAGGCTTGACCTCCAGGCTCCTAGCTCCGAAGATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp ATGGATGGAACATGTCACTCAGTGACACAGTGCACATaGCTTGGAGAGTCTCGCTGGGAAACCGCTGCCTTA +
Preference number: 3 (lower is better)
Translates to: MDGTCHSVTQCT*LGESRWETAAL
Trigger: TAAGGCAGCGGTTTCCCAGCGAGACTCTCCAAGCCATGTGCACTGTGTCACTGAGTGACATGTTCCATCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp ACGGACAAAGTGAGGGTGGAGAGGCTCTGGGTAAAGTaGGAAGCCTGGACTTCAACCTGCAGAACTTGTAAT +
Preference number: 3 (lower is better)
Translates to: TDKVRVERLWVK*EAWTSTCRTCN
Trigger: ATTACAAGTTCTGCAGGTTGAAGTCCAGGCTTCCCACTTTACCCAGAGCCTCTCCACCCTCACTTTGTCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR TCA 72 bp CTAGGAGCCTGGAGGTCAAGCCTTGCTCTGAGCCTCTaGAATGCCAGTCTATTCTGGAACATTCTGAGTTCT +
Preference number: 3 (lower is better)
Translates to: LGAWRSSLALSL*NASLFWNILSS
Trigger: AGAACTCAGAATGTTCCAGAATAGACTGGCATTTCAGAGGCTCAGAGCAAGGCTTGACCTCCAGGCTCCTAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp TCTTCTGTTACAAATAAGGAGAAGGAGGTTCCGGGGTaGAGAAGAGAAATGCAGGGCTTAGCCAAGAGGTGC +
Preference number: 3 (lower is better)
Translates to: SSVTNKEKEVPG*RREMQGLAKRC
Trigger: GCACCTCTTGGCTAAGCCCTGCATTTCTCTTCTCCACCCCGGAACCTCCTTCTCCTTATTTGTAACAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CAA 90 bp CTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTACGTTTGGAAAGACAGTATaGGAGGAACTAGGAAATGGA +
Preference number: 3 (lower is better)
Translates to: LCEAKISHDEQRTEEECTFGKTV*EELGNG
Trigger: TCCATTTCCTAGTTCCTCCAATACTGTCTTTCCAAA...CGTACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR TCA 72 bp GGTGGGAAAATGAAATCCCAAAGATGTAACAGCAGATaGCAAAGGACAGAGCTGATCTTCGGAGCTAGGAGC +
Preference number: 3 (lower is better)
Translates to: GGKMKSQRCNSR*QRTELIFGARS
Trigger: GCTCCTAGCTCCGAAGATCAGCTCTGTCCTTTGTCATCTGCTGTTACATCTTTGGGATTTCATTTTCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR-3UTR CAA 90 bp AATGCTGGGATTAAAGGCGTGCGCCATCACGCCTTAGTCTTATGTGGTGTAGTTAGCTTTATGCCTTTTTaGGAAAGACAGTATTGGAGG +
Preference number: 3 (lower is better)
Translates to: NAGIKGVRHHALVLCGVVSFMPF*ERQYWR
Trigger: CCTCCAATACTGTCTTTCCAAAAAAGGCATAAAGCT...AACTACACCACATAAGACTAAGGCGTGATGGCGCACGCCTTTAATCCCAGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR CCA 72 bp TTTGGAAAGACAGTATTGGAGGAACTAGGAAATGGATaGAACATGTCACTCAGTGACACAGTGCACATGGCT +
Preference number: 3 (lower is better)
Translates to: FGKTVLEELGNG*NMSLSDTVHMA
Trigger: AGCCATGTGCACTGTGTCACTGAGTGACATGTTCCATCCATTTCCTAGTTCCTCCAATACTGTCTTTCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
3UTR TCA 72 bp CTAAGCCACGCTGTTTATTTTTCTCCAAAGTATAGATaGTACAAGCCATATGTCAGGGCCTGTGAACACTGG +
Preference number: 3 (lower is better)
Translates to: LSHAVYFSPKYR*YKPYVRACEHW
Trigger: CCAGTGTTCACAGGCCCTGACATATGGCTTGTATCATCTATACTTTGGAGAAAAATAAACAGCGTGGCTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TGGGCTGAAGTGGTGACTCTCAGGGGCACTCCTGCTTTTCAGGCAGGGTTGGGGCAGAATGGCTGGAGGTaGGCGGAGGCCGCTGGCGTT +
Preference number: 4 (lower is better)
Translates to: WAEVVTLRGTPAFQAGLGQNGWR*AEAAGV
Trigger: AACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTG...CCCCAACCCTGCCTGAAAAGCAGGAGTGCCCCTGAGAGTCACCACTTCAGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR TCA 90 bp CTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTACGTGCTGTACCGGCTGCTaGCTCCCCTCTGCCTCTGCG +
Preference number: 4 (lower is better)
Translates to: LCEAKISHDEQRTEEECTCCTGC*LPSASA
Trigger: CGCAGAGGCAGAGGGGAGTCAGCAGCCGGTACAGCA...CGTACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR GCA 90 bp CGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGTCCTGGAACTCACTCTGGTAGCTCTGGGCGCCTaGGCCCCCAGCTGTGACTCT +
Preference number: 4 (lower is better)
Translates to: RDRVSLCSPDCPVLELTLVALGA*APSCDS
Trigger: AGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTAC...CAGAGTGAGTTCCAGGACAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp ACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTAGGTGGGCAGAATGGCTaGAGGTGGGCGGAGGCCGCT +
Preference number: 4 (lower is better)
Translates to: TSAKPRFPTMSRGLRRSVGGQNG*RWAEAA
Trigger: AGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACC...TACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TGGGCTGAAGTGGTGACTCTCAGGGGCACTCCTGCTTTTCAGGCAGGGTTGGGGGAACTGCATGATCCCTaGAGGCTGGCACATGGAGGT +
Preference number: 4 (lower is better)
Translates to: WAEVVTLRGTPAFQAGLGELHDP*RLAHGG
Trigger: ACCTCCATGTGCCAGCCTCCAGGGATCATGCAGTTC...CCCCAACCCTGCCTGAAAAGCAGGAGTGCCCCTGAGAGTCACCACTTCAGCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TCCTCTGCAGCCTCCTGTCCTAGTAGGTGGGCAGAGCCAGAGTCAATGCCAATCGTCATAGGCAGGAGGTaGAGAGACTGCTGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SSAASCPSRWAEPESMPIVIGRR*RDCWAG
Trigger: CCCAGCCCAGCAGTCTCTCCACCTCCTGCCTATGAC...GATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TCCTCTGCAGCCTCCTGTCCTAGTAGGTGGGCAGAGCCAGAGTCAATGCCAATCATGATCCCTGGAGGCTaGCACATGGAGGTGGGCAGA +
Preference number: 4 (lower is better)
Translates to: SSAASCPSRWAEPESMPIMIPGG*HMEVGR
Trigger: TCTGCCCACCTCCATGTGCCAGCCTCCAGGGATCAT...GATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR TCA 90 bp GTTGGGGGAGTATGGAGTGGTTCAGTCTCCTCTGCAGCCTCCTGTCCTAGTAGGACTCTTCGAACTGCATaGTCCCTGGAGGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: VGGVWSGSVSSAASCPSRTLRTA*SLEAGT
Trigger: TGTGCCAGCCTCCAGGGATCATGCAGTTCGAAGAGT...CCTACTAGGACAGGAGGCTGCAGAGGAGACTGAACCACTCCATACTCCCCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TCCTCTGCAGCCTCCTGTCCTAGTAGGTGGGCAGAGCCAGAGTCAATGCCAATCGCTTGGCACCCAAAGTaGGTGGCAATGACAGCGATG +
Preference number: 4 (lower is better)
Translates to: SSAASCPSRWAEPESMPIAWHPK*VAMTAM
Trigger: CATCGCTGTCATTGCCACCCACTTTGGGTGCCAAGC...GATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR GCA 90 bp ACCTCCGAAACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGGTGGAGAGACTaGTGGGCTGGGGATGTTGAA +
Preference number: 4 (lower is better)
Translates to: TSETSAKPRFPTMSRGLRRRWRD*WAGDVE
Trigger: TTCAACATCCCCAGCCCAGCAGTCTCTCCACCTCCT...CCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGTTTCGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR TCA 90 bp AATGCTGGGATTAAAGGCGTGCGCCATCACGCCTTAGTCTTATGTGGTGTAGTTGGACGCCACCTTCGATaGAGAGCATCCCCAGGTGGC +
Preference number: 4 (lower is better)
Translates to: NAGIKGVRHHALVLCGVVGRHLR*RASPGG
Trigger: GCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCC...AACTACACCACATAAGACTAAGGCGTGATGGCGCACGCCTTTAATCCCAGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR GCA 90 bp ACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGTCCTGGAACTCACTCTGTAGATGTCCCCGCGAAGGCTaGCATGGCACTGAGGATGTT +
Preference number: 4 (lower is better)
Translates to: TGFLCVALTVLSWNSLCRCPREG*HGTEDV
Trigger: AACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACA...TCTACAGAGTGAGTTCCAGGACAGGACAGTCAGGGCTACACAGAGAAACCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR GCA 90 bp TCCTCTGCAGCCTCCTGTCCTAGTAGGTGGGCAGAGCCAGAGTCAATGCCAATCCTCCTTGGGCATATATaGCACGTTGTCATAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SSAASCPSRWAEPESMPILLGHI*HVVIGR
Trigger: CCTGCCTATGACAACGTGGCATATATGCCCAAGGAG...GATTGGCATTGACTCTGGCTCTGCCCACCTACTAGGACAGGAGGCTGCAGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp ACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGTCCTGGAACTCACTCTGTAGAAAGAGCATCCCCAGGTaGCCTCGCCGAACCATAAGC +
Preference number: 4 (lower is better)
Translates to: TGFLCVALTVLSWNSLCRKSIPR*PRRTIS
Trigger: GCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTT...TCTACAGAGTGAGTTCCAGGACAGGACAGTCAGGGCTACACAGAGAAACCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp ACCTCCGAAACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGTGGAGAGACTGCTaGGCTGGGGATGTTGAAATC +
Preference number: 4 (lower is better)
Translates to: TSETSAKPRFPTMSRGLRRWRDC*AGDVEI
Trigger: GATTTCAACATCCCCAGCCCAGCAGTCTCTCCACCT...CCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGTTTCGGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp ACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTAAACAGGCAACTGGTGTaGTTCCTCTCAGCTGCTACG +
Preference number: 4 (lower is better)
Translates to: TSAKPRFPTMSRGLRRSVNRQLV*FLSAAT
Trigger: CGTAGCAGCTGAGAGGAACCACACCAGTTGCCTGTT...TACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CCA 90 bp TTCGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGTCCTGGAACTCACTCCCGTGCCAAAGGCATTaGGTAGGAAAATCACAGATG +
Preference number: 4 (lower is better)
Translates to: FETGFLCVALTVLSWNSLPCQRH*VGKSQM
Trigger: CATCTGTGATTTTCCTACCCAATGCCTTTGGCACGG...GAGTGAGTTCCAGGACAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR TCA 90 bp GTCAATGCCAATCTTCTGTTACAAATAAGGAGAAGGAGGTTCCGGGGTGGAGAAAGAACTCCAGGATGGTaGAGATGGTCAACACGGCAA +
Preference number: 4 (lower is better)
Translates to: VNANLLLQIRRRRFRGGERTPGW*RWSTRQ
Trigger: TTGCCGTGTTGACCATCTTCACCATCCTGGAGTTCT...TTCTCCACCCCGGAACCTCCTTCTCCTTATTTGTAACAGAAGATTGGCATTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS TCA 90 bp GAATGGCTGGAGGTGGGCGGAGGCCGCTGGCGTTGCTGGGCGGGATaGCAACGAACACACCATTGCGGCTTGCCACGGCTGCTGTACCGG +
Preference number: 5 (lower is better)
Translates to: EWLEVGGGRWRCWAG*QRTHHCGLPRLLYR
Trigger: CCGGTACAGCAGCCGTGGCAAGCCGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145110.3
CDS TCA 90 bp AAGATCAGGTGGTTGAGTAGCTCTGGGCGCCTGCGCCCCCAGCTGTaGCTCTTCGAACTGCATGATCCCTGGAGGCTGGCACATGGAGGT +
Preference number: 5 (lower is better)
Translates to: KIRWLSSSGRLRPQL*LFELHDPWRLAHGG
Trigger: ACCTCCATGTGCCAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087923.4
ENSMUST00000144485.2
ENSMUST00000145110.3
CDS GCA 90 bp GTTGCTGGGCGGGATGACAACGAACACACCATTGCTGGCAGGAGGTaGAGACATCGTGTTCAGAGAGCCGGCTTGCCACGGCTGCTGTAC +
Preference number: 5 (lower is better)
Translates to: VAGRDDNEHTIAGRR*RHRVQRAGLPRLLY
Trigger: GTACAGCAGCCGTGGCAAGCCGGCTCTCTGAACACGATGTCTGCACCTCCTGCCAGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CCA 90 bp AGGTGGCCTCGCCGAACCATAAGCAGGACGCTGCCGAAGCCAAGGTaGATGAGACCGATCAGGATCTGCACCGTCCCTAAAGCTTTGGGT +
Preference number: 5 (lower is better)
Translates to: RWPRRTISRTLPKPR*MRPIRICTVPKALG
Trigger: ACCCAAAGCTTTAGGGACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087923.4
ENSMUST00000145110.3
CDS GCA 90 bp AGCAGGACGCTGCCGAAGCCAAGGTGGATGAGACCGATCAGGATCTaGACCGTCCCTAAAGCTTTGGGTTCTCCGGTCAAGAACGTCTCC +
Preference number: 5 (lower is better)
Translates to: SRTLPKPRWMRPIRI*TVPKALGSPVKNVS
Trigger: GGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGGACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087923.4
ENSMUST00000145110.3
CDS GCA 90 bp TCCCAGACTGCTCTTCAACAGGCAACTGGTGTGGTTCCTCTCAGCTaGTACGGAGAGGGACCCAGAGATGATAAAACAAGCTCCTCCCCA +
Preference number: 5 (lower is better)
Translates to: SQTALQQATGVVPLS*YGEGPRDDKTSSSP
Trigger: TGGGGAGGAGCTTGTTTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTGTTGAAGAGCAGTCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS-3UTR CAA 90 bp ACCTCTGCGAAGCCAAGATTTCCCACGATGAGCAGAGGACTGAGGAGGAGTGTATCCGTGCCAAAGGCATaGGGTAGGAAAATCACAGAT +
Preference number: 5 (lower is better)
Translates to: TSAKPRFPTMSRGLRRSVSVPKA*GRKITD
Trigger: ATCTGTGATTTTCCTACCCAATGCCTTTGGCACGGA...TACACTCCTCCTCAGTCCTCTGCTCATCGTGGGAAATCTTGGCTTCGCAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CAA 72 bp TGGCTGGAGGTGGGCGGAGGCCGCTGGCGTTGCGGCTaGCCACGGCTGCTGTACCGGCTGCTGACTCCCCTC +
Preference number: 6 (lower is better)
Translates to: WLEVGGGRWRCG*PRLLYRLLTPL
Trigger: GAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CCA 72 bp AGGTGGGCAGAATGGCTGGAGGTGGGCGGAGGCCGCTaGCGTTGCGGCTTGCCACGGCTGCTGTACCGGCTG +
Preference number: 6 (lower is better)
Translates to: RWAEWLEVGGGR*RCGLPRLLYRL
Trigger: CAGCCGGTACAGCAGCCGTGGCAAGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CAA 72 bp GGCAGAATGGCTGGAGGTGGGCGGAGGCCGCTGGCGTaGCGGCTTGCCACGGCTGCTGTACCGGCTGCTGAC +
Preference number: 6 (lower is better)
Translates to: GRMAGGGRRPLA*RLATAAVPAAD
Trigger: GTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CAA 90 bp TGGGCAGAATGGCTGGAGGTGGGCGGAGGCCGCTGGCGTTGCGGCTaGCCACGGCTGCTGTACCGGCTGCTGACTCCCCTCTGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: WAEWLEVGGGRWRCG*PRLLYRLLTPLCLC
Trigger: GCAGAGGCAGAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS TCA 72 bp GAGGTGGGCGGAGGCCGCTGGCGTTGCTGGGCGGGATaGCAACGAACACACCATTGCGGCTTGCCACGGCTG +
Preference number: 6 (lower is better)
Translates to: EVGGGRWRCWAG*QRTHHCGLPRL
Trigger: CAGCCGTGGCAAGCCGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCGCCCACCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145110.3
CDS CAA 90 bp CGGAGGCCGCTGGCGTTGCTGGGCGGGATGACAACGAACACACCATaGCGGCTTGCCACGGCTGCTGTACCGGCTGCTGACTCCCCTCTG +
Preference number: 6 (lower is better)
Translates to: RRPLALLGGMTTNTP*RLATAAVPAADSPL
Trigger: CAGAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145110.3
CDS GCA 72 bp CTGGGCGCCTGCGCCCCCAGCTGTGACTCTTCGAACTaGATGATCCCTGGAGGCTGGCACATGGAGGTGGGC +
Preference number: 6 (lower is better)
Translates to: LGACAPSCDSSN*MIPGGWHMEVG
Trigger: GCCCACCTCCATGTGCCAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087923.4
ENSMUST00000144485.2
ENSMUST00000145110.3
CDS CAA 72 bp GGCAGAATGGCTGGAGGTGGGCGGAGGCCGCTGGCGTaGCTGGGCGGGATGACAACGAACACACCATTGCGG +
Preference number: 6 (lower is better)
Translates to: GRMAGGGRRPLA*LGGMTTNTPLR
Trigger: CCGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145110.3
CDS TCA 72 bp AGAGAGCCGGCTTGCCACGGCTGCTGTACCGGCTGCTaGCTCCCCTCTGCCTCTGCGCTCCCACATTCACAC +
Preference number: 6 (lower is better)
Translates to: REPACHGCCTGC*LPSASALPHSH
Trigger: GTGTGAATGTGGGAGCGCAGAGGCAGAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGGCTCTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CAA 72 bp GGCAGGAGGTGCAGACATCGTGTTCAGAGAGCCGGCTaGCCACGGCTGCTGTACCGGCTGCTGACTCCCCTC +
Preference number: 6 (lower is better)
Translates to: GRRCRHRVQRAG*PRLLYRLLTPL
Trigger: GAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGGCTCTCTGAACACGATGTCTGCACCTCCTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CAA 72 bp GGCAGAATGGCTGGAGGTGGGCGGAGGCCGCTGGCGTaGCTGGGCGGGATGACAACGAACACACCATTGCTG +
Preference number: 6 (lower is better)
Translates to: GRMAGGGRRPLA*LGGMTTNTPLL
Trigger: CAGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CAA 72 bp CTGGCGTTGCTGGGCGGGATGACAACGAACACACCATaGCGGCTTGCCACGGCTGCTGTACCGGCTGCTGAC +
Preference number: 6 (lower is better)
Translates to: LALLGGMTTNTP*RLATAAVPAAD
Trigger: GTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145110.3
CDS CAA 90 bp ACCATTGCTGGCAGGAGGTGCAGACATCGTGTTCAGAGAGCCGGCTaGCCACGGCTGCTGTACCGGCTGCTGACTCCCCTCTGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: TIAGRRCRHRVQRAG*PRLLYRLLTPLCLC
Trigger: GCAGAGGCAGAGGGGAGTCAGCAGCCGGTACAGCAGCCGTGGCAAGCCGGCTCTCTGAACACGATGTCTGCACCTCCTGCCAGCAATGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CAA 90 bp CGGAGGCCGCTGGCGTTGCTGGGCGGGATGACAACGAACACACCATaGCTGGCAGGAGGTGCAGACATCGTGTTCAGAGAGCCGGCTTGC +
Preference number: 6 (lower is better)
Translates to: RRPLALLGGMTTNTP*LAGGADIVFREPAC
Trigger: GCAAGCCGGCTCTCTGAACACGATGTCTGCACCTCCTGCCAGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAGCGGCCTCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CCA 72 bp AAGGGGACGCCACCTTCGATGAAGAGCATCCCCAGGTaGCCTCGCCGAACCATAAGCAGGACGCTGCCGAAG +
Preference number: 6 (lower is better)
Translates to: KGTPPSMKSIPR*PRRTISRTLPK
Trigger: CTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087923.4
ENSMUST00000145110.3
CDS GCA 72 bp CGGGATGACAACGAACACACCATTGCTGGCAGGAGGTaGAGACATCGTGTTCAGAGAGCCGGCTTGCCACGG +
Preference number: 6 (lower is better)
Translates to: RDDNEHTIAGRR*RHRVQRAGLPR
Trigger: CCGTGGCAAGCCGGCTCTCTGAACACGATGTCTGCACCTCCTGCCAGCAATGGTGTGTTCGTTGTCATCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CCA 72 bp TCCGGTCAAGAACGTCTCCATTGGTCTAAGATCAGGTaGTTGAGTAGCTCTGGGCGCCTGCGCCCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: SGQERLHWSKIR*LSSSGRLRPQL
Trigger: CAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087923.4
ENSMUST00000144485.2
ENSMUST00000145110.3
CDS TCA 72 bp GAAGAATGGCTGTCCCCGCGAAGGCTGCCATGGCACTaGGGATGTTGGTTCCCAGACTGCTCTTCAACAGGC +
Preference number: 6 (lower is better)
Translates to: EEWLSPRRLPWH*GCWFPDCSSTG
Trigger: GCCTGTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CCA 72 bp CGCCGAACCATAAGCAGGACGCTGCCGAAGCCAAGGTaGATGAGACCGATCAGGATCTGCACCGTCCCTAAA +
Preference number: 6 (lower is better)
Translates to: RRTISRTLPKPR*MRPIRICTVPK
Trigger: TTTAGGGACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087923.4
ENSMUST00000145110.3
CDS CAA 72 bp CTGGCGTTGCTGGGCGGGATGACAACGAACACACCATaGCTGGCAGGAGGTGCAGACATCGTGTTCAGAGAG +
Preference number: 6 (lower is better)
Translates to: LALLGGMTTNTP*LAGGADIVFRE
Trigger: CTCTCTGAACACGATGTCTGCACCTCCTGCCAGCAATGGTGTGTTCGTTGTCATCCCGCCCAGCAACGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144485.2
CDS CAA 90 bp AGAAGAATGGCTGTCCCCGCGAAGGCTGCCATGGCACTGAGGATGTaGGTTCCCAGACTGCTCTTCAACAGGCAACTGGTGTGGTTCCTC +
Preference number: 6 (lower is better)
Translates to: RRMAVPAKAAMALRM*VPRLLFNRQLVWFL
Trigger: GAGGAACCACACCAGTTGCCTGTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS GCA 72 bp CTGCCGAAGCCAAGGTGGATGAGACCGATCAGGATCTaGACCGTCCCTAAAGCTTTGGGTTCTCCGGTCAAG +
Preference number: 6 (lower is better)
Translates to: LPKPRWMRPIRI*TVPKALGSPVK
Trigger: CTTGACCGGAGAACCCAAAGCTTTAGGGACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087923.4
ENSMUST00000145110.3
CDS CCA 72 bp TTGGTTCCCAGACTGCTCTTCAACAGGCAACTGGTGTaGTTCCTCTCAGCTGCTACGGAGAGGGACCCAGAG +
Preference number: 6 (lower is better)
Translates to: LVPRLLFNRQLV*FLSAATERDPE
Trigger: CTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTGTTGAAGAGCAGTCTGGGAACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CCA 72 bp GGATGTTGGTTCCCAGACTGCTCTTCAACAGGCAACTaGTGTGGTTCCTCTCAGCTGCTACGGAGAGGGACC +
Preference number: 6 (lower is better)
Translates to: GCWFPDCSSTGN*CGSSQLLRRGT
Trigger: GGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTGTTGAAGAGCAGTCTGGGAACCAACATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS GCA 72 bp ATATGCCACGTTGTCATAGGCAGGAGGTGGAGAGACTaGTGGGCTGGGGATGTTGAAATCCGTGCCAAAGGC +
Preference number: 6 (lower is better)
Translates to: ICHVVIGRRWRD*WAGDVEIRAKG
Trigger: GCCTTTGGCACGGATTTCAACATCCCCAGCCCAGCAGTCTCTCCACCTCCTGCCTATGACAACGTGGCATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CCA 72 bp CTTGGGCATATATGCCACGTTGTCATAGGCAGGAGGTaGAGAGACTGCTGGGCTGGGGATGTTGAAATCCGT +
Preference number: 6 (lower is better)
Translates to: LGHICHVVIGRR*RDCWAGDVEIR
Trigger: ACGGATTTCAACATCCCCAGCCCAGCAGTCTCTCCACCTCCTGCCTATGACAACGTGGCATATATGCCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS GCA 72 bp GCTCTTCAACAGGCAACTGGTGTGGTTCCTCTCAGCTaGTACGGAGAGGGACCCAGAGATGATAAAACAAGC +
Preference number: 6 (lower is better)
Translates to: ALQQATGVVPLS*YGEGPRDDKTS
Trigger: GCTTGTTTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTGTTGAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087923.4
CDS CAA 90 bp CCAAGGTGGATGAGACCGATCAGGATCTGCACCGTCCCTAAAGCTTaGGGTTCTCCGGTCAAGAACGTCTCCATTGGTCTAAGATCAGGT +
Preference number: 6 (lower is better)
Translates to: PRWMRPIRICTVPKA*GSPVKNVSIGLRSG
Trigger: ACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGGACGGTGCAGATCCTGATCGGTCTCATCCACCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087923.4
ENSMUST00000144485.2
ENSMUST00000145110.3
CDS CAA 72 bp ATGAGACCGATCAGGATCTGCACCGTCCCTAAAGCTTaGGGTTCTCCGGTCAAGAACGTCTCCATTGGTCTA +
Preference number: 6 (lower is better)
Translates to: MRPIRICTVPKA*GSPVKNVSIGL
Trigger: TAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGGACGGTGCAGATCCTGATCGGTCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087923.4
ENSMUST00000144485.2
ENSMUST00000145110.3