RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MS4A14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000099398

Ensembl transcript IDs: ENSMUST00000187467.2

Found 209 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGAAGGTACAAGTTCTTTaGAGGTCCTGCATGCACTTC +
Preference number: 2 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVKVQVL*RSCMHF
Trigger: GAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTT...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
3UTR-3UTR GCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTATGGAAGAATCAACTaGTTTCTCTTCATCTGGTTC +
Preference number: 2 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNYGRIN*FLFIWF
Trigger: GAACCAGATGAAGAGAAAGCAGTTGATTCTTCCATA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
3UTR-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCAAAGAACACAGGTTATaGAAGAATCAACTGCTTTCT +
Preference number: 2 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSKEHRL*KNQLLS
Trigger: AGAAAGCAGTTGATTCTTCCATAACCTGTGTTCTTT...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
3UTR CCA 72 bp GAATTAGACAGCAAGCATAGGAAAGAACACAGGTTATaGAAGAATCAACTGCTTTCTCTTCATCTGGTTCCA +
Preference number: 3 (lower is better)
Translates to: ELDSKHRKEHRL*KNQLLSLHLVP
Trigger: TGGAACCAGATGAAGAGAAAGCAGTTGATTCTTCCATAACCTGTGTTCTTTCCTATGCTTGCTGTCTAATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
3UTR GCA 72 bp GATTTAAAAAGGTACAAGTTCTTTGAAGGTCCTGCATaGACTTCATCTGTGGTGTATGAATTAGACAGCAAG +
Preference number: 3 (lower is better)
Translates to: DLKRYKFFEGPA*TSSVVYELDSK
Trigger: CTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTTTAAATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTGGAGTCCCCTTGGGTaGAGTCCCTTGGGATGGAGT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRWSPLG*SPLGWS
Trigger: ACTCCATCCCAAGGGACTTCACCCAAGGGGACTCCA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTGGAGTCCCTTGGGGTaGAGTCCCTTGGGATGGAGT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRWSPLG*SPLGWS
Trigger: ACTCCATCCCAAGGGACTCCACCCCAAGGGACTCCA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTCAGATGGAGTCCCTTaGGATGGAGTCCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRSDGVP*DGVPWG
Trigger: ACCCCAAGGGACTCCATCCCAAGGGACTCCATCTGA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTGGGGTGGAGTCACTTaGGATGGAGTCCCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHWGGVT*DGVPLG
Trigger: ACCCAAGGGGACTCCATCCCAAGTGACTCCACCCCA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTGCTCTGGGGAGAGTaGAGGAGTAGCCTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLLWGE*RSSLLF
Trigger: GAACAGGAGGCTACTCCTCCACTCTCCCCAGAGCAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGCAGTCTTGGGATCTCTaGCTAATAGGCTGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRQSWDL*LIGCQD
Trigger: ATCCTGGCAGCCTATTAGCCAGAGATCCCAAGACTG...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTTTGATTTCTTGCTCTaGGGAGAGTGGAGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRFDFLL*GEWRSS
Trigger: GCTACTCCTCCACTCTCCCCAGAGCAAGAAATCAAA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGACCTCCCTGCCAATTTTaGAGCTGGGTGTTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRPPCQF*SWVFGA
Trigger: AGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAGG...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTCCCTTGGGATGGAGTaGCTTGGGGTAGAGTTCCTT +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNSLGME*LGVEFL
Trigger: AAGGAACTCTACCCCAAGGCACTCCATCCCAAGGGA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTCGCCCACAACACATaGTCCTTCAAGGGAGGGTGT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDFAHNT*SFKGGC
Trigger: ACACCCTCCCTTGAAGGACCATGTGTTGTGGGCGAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTGGAGTCCCTTGGGATaGAGTCTCTTGAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDWSPLG*SLLRWS
Trigger: ACTCCACCTCAAGAGACTCCATCCCAAGGGACTCCA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATGGAGTTCCTTCAGATaGAGTCCCTTGGGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: KRYKFFEGPACTSSVVYEWSSFR*SPLGWS
Trigger: ACTCCACCCCAAGGGACTCCATCTGAAGGAACTCCA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATTGGAGTCCCTTCAGATaGAGTCCCTTGAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHWSPFR*SPLRWS
Trigger: ACTCCACCTCAAGGGACTCCATCTGAAGGGACTCCA...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTGGAGCTGGGTGTTTaGGGCTTTCTGCTCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLELGV*GFLLFG
Trigger: CCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATGGGATGGGGTATATTaGGAAGGGGTGTCTTGGGAT +
Preference number: 4 (lower is better)
Translates to: KRYKFFEGPACTSSVVYEWDGVY*EGVSWD
Trigger: ATCCCAAGACACCCCTTCTCAATATACCCCATCCCA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGACGGGGTAGAGTTTCTTaGGATGGAGTCCCTTCAGAT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRRGRVS*DGVPSD
Trigger: ATCTGAAGGGACTCCATCTCAAGAAACTCTACCCCG...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGGGGTACAGTCTCTTaGGATGGAGTCCCTTCAGAT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRWGTVS*DGVPSD
Trigger: ATCTGAAGGGACTCCATCTCAAGAGACTGTACCCCA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGGCCTCATGTCTTCTaGCTGCTGGTCTGTTGGTTT +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNWPHVF*LLVCWF
Trigger: AAACCAACAGACCAGCAGTCAGAAGACATGAGGCCA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAACTGCTCCCCAGAATaGATATCCTGTGAGGATCAC +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHNCSPE*ISCEDH
Trigger: GTGATCCTCACAGGATATCCATTCTGGGGAGCAGTT...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATCAGCCTCTCTTGGACTaGTCCAGCATCTGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHQPLLD*SSICFL
Trigger: TAAGAAGCAGATGCTGGACCAGTCCAAGAGAGGCTG...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGGGTGAAGTCCCTTaGGATGGAGTCCCTTTGGAT +
Preference number: 4 (lower is better)
Translates to: KRYKFFEGPACTSSVVYELGEVP*DGVPLD
Trigger: ATCCAAAGGGACTCCATCCCAAGGGACTTCACCCAA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGGGGATGGAGTCCCCTTaGGTGAAGTCCCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVGMESP*VKSLGM
Trigger: CATCCCAAGGGACTTCACCCAAGGGGACTCCATCCC...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATTGGAGTCATTTCAGATaGAGTCCCTTGGGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHWSHFR*SPLGWS
Trigger: ACTCCACCCCAAGGGACTCCATCTGAAATGACTCCA...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTGGAGTCCCTTGGGGTaGAGTCATTTCAGATGGAGT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDWSPLG*SHFRWS
Trigger: ACTCCATCTGAAATGACTCCACCCCAAGGGACTCCA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTTGGGATTGTTGTACTaGGACCTCCTCTTTGGCCTG +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNLGLLY*DLLFGL
Trigger: CAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATCTTGAGTTAGCTCCATaGCTTCTGTTCGAATGTCCC +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNLELAP*LLFECP
Trigger: GGGACATTCGAACAGAAGTCATGGAGCTAACTCAAG...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTCTTTATCAGACTGCTaGCCTTCATCCTCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHSLSDC*PSSSLS
Trigger: TGACAGAGAGGATGAAGGTCAGCAGTCTGATAAAGA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTCAAGGGAGGGTGTCTaGCAGACTCTGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVSREGV*QTLCCC
Trigger: ACAGCAGCACAGAGTCTGCCAGACACCCTCCCTTGA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGGATGCCATTAATGATTaGGATGACAAATTGGCAGGT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRDAIND*DDKLAG
Trigger: ACCTGCCAATTTGTCATCCCAATCATTAATGGCATC...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTCAGATGGAGTCCCTTaGGATGGAGTCACTTCAGAT +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNSDGVP*DGVTSD
Trigger: ATCTGAAGTGACTCCATCCCAAGGGACTCCATCTGA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGGAGTCCCTTGGGATaGAGTACCTTGGGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSWSPLG*STLGWS
Trigger: ACTCCACCCCAAGGTACTCCATCCCAAGGGACTCCA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATGGGTCTGATGAACTATaGTGGTTTGGGGTTGGATTT +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHGSDEL*WFGVGF
Trigger: AAATCCAACCCCAAACCACCATAGTTCATCAGACCC...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTGGTATGCAGTCTCTTaGGACGATCTGTCTTTAGTT +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHWYAVS*DDLSLV
Trigger: AACTAAAGACAGATCGTCTCAAGAGACTGCATACCA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTTGATCTCTTTGATATaGTGTGGAAGAAGTGGTGTT +
Preference number: 4 (lower is better)
Translates to: EGPACTSSVVYELDSKHRLISLI*CGRSGV
Trigger: AACACCACTTCTTCCACATCATATCAAAGAGATCAA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTCAGTTTGATTTCTTaGTCTGGGGAGAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDFSLIS*SGESGG
Trigger: TCCTCCACTCTCCCCAGAGCAAGAAATCAAACTGAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGCTCTTGGGATGGACTTaGCCATGTTTGCCTGGCAAG +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVLLGWT*PCLPGK
Trigger: CTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAG...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTGTATGTCTTGGGATaGGGTATATTGAGAAGGGGT +
Preference number: 4 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLYVLG*GILRRG
Trigger: ACCCCTTCTCAATATACCCCATCCCAAGACATACAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATCCACAGAATATCTCTTaGGATGGACTTGCCCATGTT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDPQNIS*DGLAHV
Trigger: AACATGGGCAAGTCCATCCCAAGAGATATTCTGTGG...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATATGGTGGTTTGGGGTTaGATTTGTTGGTATAGTGCC +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNMVVWG*ICWYSA
Trigger: GGCACTATACCAACAAATCCAACCCCAAACCACCAT...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGGTGTTTAGATCTTTaGATGAGCCTGAGCAAGGTG +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNWCLDL*MSLSKV
Trigger: CACCTTGCTCAGGCTCATCCAAAGATCTAAACACCA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATATCATGGGACATTGTaGCAAGTCCTGTCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRYHGTL*QVLSEE
Trigger: TTCTTCTGACAGGACTTGTCACAATGTCCCATGATA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATGGATGTTCAGTATTTTaGGCACCTTCTGAAGGAAAG +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNGCSVF*APSEGK
Trigger: CTTTCCTTCAGAAGGTGCTCAAAATACTGAACATCC...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTCCGCATCATTCAGGTaGTCAGTTGTAGAATCTTTC +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNSASFR*SVVESF
Trigger: GAAAGATTCTACAACTGATCACCTGAATGATGCGGA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTGGTTTCTCACTTTTaGCTTGCAGGTCCACAGAAT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRLVSHF*LAGPQN
Trigger: ATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATCAGGCTTTGATTTGCTaGTCTATGGATTTCCGTCTT +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHQALIC*SMDFRL
Trigger: AAGACGGAAATCCATAGATCAGCAAATCAAAGCCTG...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGGGATATCCAGGCTTTaGTTTGCTGATCTATGGATT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDGISRL*FADLWI
Trigger: AATCCATAGATCAGCAAATCAAAGCCTGGATATCCC...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTGTTTCTCCAACCTTaGCTTATCCAGTCTTGGGAT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLFLQP*LIQSWD
Trigger: ATCCCAAGACTGGATAAGTCAAGGTTGGAGAAACAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATCAATTATCACACAACTaGCTTGGGGCTCTCTTTACT +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNQLSHN*LGALFT
Trigger: AGTAAAGAGAGCCCCAAGGCAGTTGTGTGATAATTG...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGGAGTCCCTTGGGGTaGAGTTTCTTCAGATGGAGT +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSWSPLG*SFFRWS
Trigger: ACTCCATCTGAAGAAACTCCACCCCAAGGGACTCCA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGGGATGGAGTACCTTaGGGTGGAGTTCCTTCAGAT +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSWDGVP*GGVPSD
Trigger: ATCTGAAGGAACTCCACCCCAAGGTACTCCATCCCA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATGGAGTCTCTTTATATTaGGAGTCTTGGGATGGTCTA +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHGVSLY*ESWDGL
Trigger: TAGACCATCCCAAGACTCCCAATATAAAGAGACTCC...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGAGTGGCAATTGGTCTGTaGTTTGGGTATATGCATCTT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRVAIGL*FGYMHL
Trigger: AAGATGCATATACCCAAACCACAGACCAATTGCCAC...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTGATTTGCTCATCTTaGGATTGTTGTACTGGGACC +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLICSS*DCCTGT
Trigger: GGTCCCAGTACAACAATCCCAAGATGAGCAAATCAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGCCAATTTTGGAGCTaGGTGTTTGGGGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSCQFWS*VFGAFC
Trigger: GCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGGGGTTGGATTTGTTaGTATAGTGCCCTTTGTCTT +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNWGWIC*YSALCL
Trigger: AAGACAAAGGGCACTATACCAACAAATCCAACCCCA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGCAATTGATGACCTaGGGTCTGATGAACTATGGT +
Preference number: 4 (lower is better)
Translates to: KRYKFFEGPACTSSVVYELQLMT*GLMNYG
Trigger: ACCATAGTTCATCAGACCCCAGGTCATCAATTGCAA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTCTCACTTTTGACTTaGAGGTCCACAGAATATCTC +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRFSLLT*RSTEYL
Trigger: GAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTCTATAGTGATGACATaGTTCCTTCTCTTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNSIVMT*FLLFSS
Trigger: TGAGGAGAAGAGAAGGAACCATGTCATCACTATAGA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCGTAGAGCATTCAGTTTaGTTTCTTGCTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSVEHSV*FLALGR
Trigger: TCTCCCCAGAGCAAGAAATCAAACTGAATGCTCTAC...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGGAATGATATGTCTTaGGCTAGCATATCTTGGAAT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRWNDMS*ASISWN
Trigger: ATTCCAAGATATGCTAGCTCAAGACATATCATTCCA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGAAGAGAAAGAAGAATCTaGATGGCCCCTAAAAGTTTT +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRRERRI*MAPKSF
Trigger: AAAACTTTTAGGGGCCATCCAGATTCTTCTTTCTCT...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGCGCCTTGGTTTATCATaGGACATTGTGACAAGTCCT +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVRLGLS*DIVTSP
Trigger: AGGACTTGTCACAATGTCCCATGATAAACCAAGGCG...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGACTCAGAATATCTCCTTaGTTTCTCACTTTTGACTTG +
Preference number: 4 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRLRISP*FLTFDL
Trigger: CAAGTCAAAAGTGAGAAACCAAGGAGATATTCTGAG...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGATTTTGAGCACCTTCTaGAGGAAAGAAGAACACAGC +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVILSTF*RKEEHS
Trigger: GCTGTGTTCTTCTTTCCTTCAGAAGGTGCTCAAAAT...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTGGAGTTTCTTGGTATaGAGTCTCTTGAGACGATCT +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVWSFLV*SLLRRS
Trigger: AGATCGTCTCAAGAGACTGCATACCAAGAAACTCCA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATTTTTGGTCTTTGATTTaGTCATCTTGGGATTGTTGT +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHFWSLI*SSWDCC
Trigger: ACAACAATCCCAAGATGAGCAAATCAAAGACCAAAA...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR GCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCGGCTTCACTTCAAACTaGCATTCTTGTGCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSGFTSN*HSCAFQ
Trigger: TTGGAAAGCACAAGAATGGCAGTTTGAAGTGAAGCC...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATTGGAATGGAGTATCTTaGAAGAAAATCTCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHWNGVS*KKISCD
Trigger: ATCACAAGAGATTTTCTTCCAAGATACTCCATTCCA...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAAAATTGGTCTGTGGTTTaGGTATATGCATCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: KRYKFFEGPACTSSVVYENWSVV*VYASCF
Trigger: AAAACAAGATGCATATACCCAAACCACAGACCAATT...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTTGAGCTTGCTCTTCTaGAGGTTGCTCTTTATCAGA +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSLSLLF*RLLFIR
Trigger: TCTGATAAAGAGCAACCTCCAGAAGAGCAAGCTCAA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTGCTGATCTTCAACTaGTTGAACTTGAGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVLLIFN*LNLSLL
Trigger: GAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATCTCTTTGATATGATGTaGAAGAAGTGGTGTTTAGAT +
Preference number: 4 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLFDMM*KKWCLD
Trigger: ATCTAAACACCACTTCTTCCACATCATATCAAAGAG...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTGAGACTCTTAACTTaGAGAAAGCATAACCGCCTA +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVLRLLT*RKHNRL
Trigger: TAGGCGGTTATGCTTTCTTCAAGTTAAGAGTCTCAA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCACTATGAGGTCTATATaGATAGGCAGTCAAGACAGT +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSTMRSI*IGSQDS
Trigger: ACTGTCTTGACTGCCTATCCATATAGACCTCATAGT...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTCTGATGAACTATGGTaGTTTGGGGTTGGATTTGTT +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVSDELW*FGVGFV
Trigger: AACAAATCCAACCCCAAACCACCATAGTTCATCAGA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR TCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGGGATTGGTTGTCTTaGAATGGTATGTTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSWDWLS*NGMFSE
Trigger: TTCTGAAAACATACCATTTCAAGACAACCAATCCCA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGCAAGACAGTTTCATTTaGGTCTATAGTGATGACATG +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVQDSFI*VYSDDM
Trigger: CATGTCATCACTATAGACCCAAATGAAACTGTCTTG...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTGTATTGTTTTCTTCTaGGGCAGGATGTTCAGTATT +
Preference number: 4 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVCIVFF*GRMFSI
Trigger: AATACTGAACATCCTGCCCCAGAAGAAAACAATACA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CCA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTGTGGTATTTTTCTTTaGGGATATCCAGGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSCGIFL*GYPGFD
Trigger: ATCAAAGCCTGGATATCCCCAAAGAAAAATACCACA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 90 bp TGGAGTCCCTTGGGGTGGAGTCACTTCAGATGGAGACACTTGGAGTaGAGTCCCTTCAGATGGAGTCCCTTGGGATGGAGTCCCTTGGGG +
Preference number: 5 (lower is better)
Translates to: WSPLGWSHFRWRHLE*SPFRWSPLGWSPLG
Trigger: CCCCAAGGGACTCCATCCCAAGGGACTCCATCTGAAGGGACTTCACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TCAGATGGAGTCCCTTGGGGTGGAGTCACTTCAGATGGAGACACTTaGAGTGAAGTCCCTTCAGATGGAGTCCCTTGGGATGGAGTCCCT +
Preference number: 5 (lower is better)
Translates to: SDGVPWGGVTSDGDT*SEVPSDGVPWDGVP
Trigger: AGGGACTCCATCCCAAGGGACTCCATCTGAAGGGACTTCACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TGGGATGGAGTGCCTTGGGGTAGAGTTCCTTCAGATGGAGTCCCTTaGGGTGGAGTTTCTTCAGATGGAGTTCCTTGGGGTGAAGTCCCT +
Preference number: 5 (lower is better)
Translates to: WDGVPWGRVPSDGVP*GGVSSDGVPWGEVP
Trigger: AGGGACTTCACCCCAAGGAACTCCATCTGAAGAAACTCCACCCCAAGGGACTCCATCTGAAGGAACTCTACCCCAAGGCACTCCATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TGGAGTCTCTTGGGGTACAGTCTCTTGAGATGGAGTCCCTTCAGATaGAGTCCCTTGAGGTGGAGTTCCTTCAGATGGAGTCTCTCGGGG +
Preference number: 5 (lower is better)
Translates to: WSLLGYSLLRWSPFR*SPLRWSSFRWSLSG
Trigger: CCCCGAGAGACTCCATCTGAAGGAACTCCACCTCAAGGGACTCCATCTGAAGGGACTCCATCTCAAGAGACTGTACCCCAAGAGACTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 90 bp TGGAGTCCCTTGGGGTGGAGTCACTTCAGATGGAGACACTTGGAGTaGAGTCCCTTCAGATGGAGTCCCTTGGGATGGAGTCACTTCAGA +
Preference number: 5 (lower is better)
Translates to: WSPLGWSHFRWRHLE*SPFRWSPLGWSHFR
Trigger: TCTGAAGTGACTCCATCCCAAGGGACTCCATCTGAAGGGACTTCACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TCAGATGGAGTCCCTTGGGATGGAGTCACTTCAGATGGAGTCCCTTaGGGTGGAGTCACTTCAGATGGAGACACTTGGAGTGAAGTCCCT +
Preference number: 5 (lower is better)
Translates to: SDGVPWDGVTSDGVP*GGVTSDGDTWSEVP
Trigger: AGGGACTTCACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAGTGACTCCATCCCAAGGGACTCCATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTTGGGGTGGAGTCCCTaGGGATGGAGTGCCTTGGGG +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRLGWSP*GWSALG
Trigger: CCCCAAGGCACTCCATCCCAAGGGACTCCACCCCAA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 90 bp GGGTATGGTGTTAATGGGGGAGGTAGAGCATTCAGTTTGATTTCTTaGTCTGGGGAGAGTGGAGGAGTAGCCTCCTGTTCCTCTGGAACA +
Preference number: 5 (lower is better)
Translates to: GYGVNGGGRAFSLIS*SGESGGVASCSSGT
Trigger: TGTTCCAGAGGAACAGGAGGCTACTCCTCCACTCTCCCCAGAGCAAGAAATCAAACTGAATGCTCTACCTCCCCCATTAACACCATACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp CTCCCTGCCAATTTTGGAGCTGGGTGTTTGGGGCTTTCTGCTCTTTaGGTTGCTGATCTTCAACTGGTTGAACTTGAGCTTGCTCTTCTG +
Preference number: 5 (lower is better)
Translates to: LPANFGAGCLGLSAL*VADLQLVELELALL
Trigger: CAGAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGGGATGGAGTCCCTaGGGGTGGAGTCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: KRYKFFEGPACTSSVVYELGWSP*GWSHLG
Trigger: TCCCAAGTGACTCCACCCCAAGGGACTCCATCCCAA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAAAGAACACAGCCTCTCTaGGACTGGTCCAGCATCTGC +
Preference number: 5 (lower is better)
Translates to: KRYKFFEGPACTSSVVYERTQPL*DWSSIC
Trigger: GCAGATGCTGGACCAGTCCAAGAGAGGCTGTGTTCT...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTGGGATGGAGTACCTaGGGGTGGAGTTCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLGWST*GWSSFR
Trigger: TCTGAAGGAACTCCACCCCAAGGTACTCCATCCCAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTTGCTGATCTTCAGCTaGCTGATGTGGCAATTGGTC +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRLLIFS*LMWQLV
Trigger: GACCAATTGCCACATCAGCAAGCTGAAGATCAGCAA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp GGTTTCTCACTTTTGACTTGCAGGTCCACAGAATATCTCTTGGGATaGACTTGCCCATGTTTGCCTGGCAAGGATAAGGAAAGTCTTCTT +
Preference number: 5 (lower is better)
Translates to: GFSLLTCRSTEYLLG*TCPCLPGKDKESLL
Trigger: AAGAAGACTTTCCTTATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTTGGGGTGGAGTCACTaGGGATGGAGTCCCCTTGGG +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSLGWSH*GWSPLG
Trigger: CCCAAGGGGACTCCATCCCAAGTGACTCCACCCCAA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTCAGATGGAGTCCCTaGGGGTGGAGTCATTTCAGA +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHFRWSP*GWSHFR
Trigger: TCTGAAATGACTCCACCCCAAGGGACTCCATCTGAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTGGGGTGGAGTCTCTaGGGGTACAGTCTCTTGAGA +
Preference number: 5 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRLGWSL*GYSLLR
Trigger: TCTCAAGAGACTGTACCCCAAGAGACTCCACCCCAA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGATCAGCTTGCTGATCTaGAGCTTGCTGATCTTCAGT +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRISLLI*SLLIFS
Trigger: ACTGAAGATCAGCAAGCTCAAGATCAGCAAGCTGAT...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTTGGAGCTGGGTGTTaGGGGCTTTCTGCTCTTTGG +
Preference number: 5 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDFGAGC*GLSALW
Trigger: CCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGCTGACTGCTGGTCTGTaGGTTTCTGACATGTTTCTT +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRLTAGL*VSDMFL
Trigger: AAGAAACATGTCAGAAACCAACAGACCAGCAGTCAG...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 90 bp TGCCAGGATGGAGTTGACCAGAATGAACATGACTTTTCTGTGAATTaGAAGCTTTGGGTTTCCCAATTATCACACAACTGCCTTGGGGCT +
Preference number: 5 (lower is better)
Translates to: CQDGVDQNEHDFSVN*KLWVSQLSHNCLGA
Trigger: AGCCCCAAGGCAGTTGTGTGATAATTGGGAAACCCAAAGCTTTCAATTCACAGAAAAGTCATGTTCATTCTGGTCAACTCCATCCTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 90 bp CTGAAGGAAAGAAGAACACAGCCTCTCTTGGACTGGTCCAGCATCTaGTTCTTAAGGATACAACAGTCACAGAGATGCTTAACTCTACTA +
Preference number: 5 (lower is better)
Translates to: LKERRTQPLLDWSSI*FLRIQQSQRCLTLL
Trigger: TAGTAGAGTTAAGCATCTCTGTGACTGTTGTATCCTTAAGAAGCAGATGCTGGACCAGTCCAAGAGAGGCTGTGTTCTTCTTTCCTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TGGTATAGTGCCCTTTGTCTTAAGGATTCTCTCTCTAATAGCTCTTaGGATTCCCAGTCTAGGGAAGGCTTCACTTCAAACTGCCATTCT +
Preference number: 5 (lower is better)
Translates to: WYSALCLKDSLSNSS*DSQSREGFTSNCHS
Trigger: AGAATGGCAGTTTGAAGTGAAGCCTTCCCTAGACTGGGAATCCCAAGAGCTATTAGAGAGAGAATCCTTAAGACAAAGGGCACTATACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTTCAGATGGAGTCCCTaGGGATGGAGTCACTTCAGA +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNFRWSP*GWSHFR
Trigger: TCTGAAGTGACTCCATCCCAAGGGACTCCATCTGAA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTCAGATGGAGTCCCTaGGGGTGGAGTTTCTTCAGA +
Preference number: 5 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRFRWSP*GWSFFR
Trigger: TCTGAAGAAACTCCACCCCAAGGGACTCCATCTGAA...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTCAGATGGAGTCCCTaGAGGTGGAGTTCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: KRYKFFEGPACTSSVVYEFRWSP*RWSSFR
Trigger: TCTGAAGGAACTCCACCTCAAGGGACTCCATCTGAA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATGTGCATTTGGGGTACAGTCTCTaGAGATGGAGTCCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: SLHLVPLSGICGFWLDVHLGYSL*RWSPFR
Trigger: TCTGAAGGGACTCCATCTCAAGAGACTGTACCCCAA...ATGCACATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp GGTAGTAGATTCTCTATAGATTTTTGGTCTTTGATTTGCTCATCTTaGGATTGTTGTACTGGGACCTCCTCTTTGGCCTGCTGGTCATCA +
Preference number: 5 (lower is better)
Translates to: GSRFSIDFWSLICSS*DCCTGTSSLACWSS
Trigger: TGATGACCAGCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAATCTACTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATATTCAGTTTGATTTCTaGCTCTGGGGAGAGTGGAGG +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNIQFDF*LWGEWR
Trigger: CCTCCACTCTCCCCAGAGCAAGAAATCAAACTGAAT...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATCTTGGTTTCTCACTTTaGACTTGCAGGTCCACAGAA +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLGFSL*TCRSTE
Trigger: TTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAAG...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTGCTGATGTGGCAATaGGTCTGTGGTTTGGGTATA +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLLMWQ*VCGLGI
Trigger: TATACCCAAACCACAGACCAATTGCCACATCAGCAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATCTCATCTTGGGATTGTaGTACTGGGACCTCCTCTTT +
Preference number: 5 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLILGL*YWDLLF
Trigger: AAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAG...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTTCAACTGGTTGAACTaGAGCTTGCTCTTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNFNWLN*SLLFWR
Trigger: CCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATCTGATCTTCAACTGGTaGAACTTGAGCTTGCTCTTC +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLIFNW*NLSLLF
Trigger: GAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAG...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTATATAGTTTTGCAATaGATGACCTGGGGTCTGATG +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRYIVLQ*MTWGLM
Trigger: CATCAGACCCCAGGTCATCAATTGCAAAACTATATA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 90 bp TTTATCATGGGACATTGTGACAAGTCCTGTCAGAAGAAAAATAACTaGTCCCCAGAATGGATATCCTGTGAGGATCACGAGAGGAAATTC +
Preference number: 5 (lower is better)
Translates to: FIMGHCDKSCQKKNN*SPEWISCEDHERKF
Trigger: GAATTTCCTCTCGTGATCCTCACAGGATATCCATTCTGGGGAGCAGTTATTTTTCTTCTGACAGGACTTGTCACAATGTCCCATGATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 90 bp TGTTCTTCTGGTAGTAGATTCTCTATAGATTTTTGGTCTTTGATTTaGTCATCTTGGGATTGTTGTACTGGGACCTCCTCTTTGGCCTGC +
Preference number: 5 (lower is better)
Translates to: CSSGSRFSIDFWSLI*SSWDCCTGTSSLAC
Trigger: GCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAATCTACTACCAGAAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 90 bp GTGGTGTTTAGATCTTTGGATGAGCCTGAGCAAGGTGTATTGTTCTaGACCTCTTGCTCTGAAGCTATGTTGGATAAACAGGTTACATAT +
Preference number: 5 (lower is better)
Translates to: VVFRSLDEPEQGVLF*TSCSEAMLDKQVTY
Trigger: ATATGTAACCTGTTTATCCAACATAGCTTCAGAGCAAGAGGTGCAGAACAATACACCTTGCTCAGGCTCATCCAAAGATCTAAACACCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp AGAACTATGAGGTCTATATGGATAGGCAGTCAAGACAGTTTCATTTaGGTCTATAGTGATGACATGGTTCCTTCTCTTCTCCTCAGATGG +
Preference number: 5 (lower is better)
Translates to: RTMRSIWIGSQDSFI*VYSDDMVPSLLLRW
Trigger: CCATCTGAGGAGAAGAGAAGGAACCATGTCATCACTATAGACCCAAATGAAACTGTCTTGACTGCCTATCCATATAGACCTCATAGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ACTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGAGATTGGGATGACAAATaGGCAGGTGAAAAATGGAGG +
Preference number: 5 (lower is better)
Translates to: TAFSSSGSIIWHLWFLVRDWDDK*AGEKWR
Trigger: CCTCCATTTTTCACCTGCCAATTTGTCATCCCAATC...TCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTGGTTTGGAGACTCTaGGGATTGAATCTCTTGGAA +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHLVWRL*GLNLLE
Trigger: TTCCAAGAGATTCAATCCCAAGAGTCTCCAAACCAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTGGTATGGAGTCCCTaGGGATGGAGTCTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVLVWSP*GWSLLR
Trigger: CCTCAAGAGACTCCATCCCAAGGGACTCCATACCAA...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTGAGATGGAGACTCTaGAGACAGAGTTCCTTGAGA +
Preference number: 5 (lower is better)
Translates to: KRYKFFEGPACTSSVVYELRWRL*RQSSLR
Trigger: TCTCAAGGAACTCTGTCTCAAGAGTCTCCATCTCAA...TTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTTCAGATGGAGTCCCTaGGGGTGGAGTCACTTCAGA +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSFRWSP*GWSHFR
Trigger: TCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTTTTTGGTCTTTGATTaGCTCATCTTGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRFLVFD*LILGLL
Trigger: CAACAATCCCAAGATGAGCAAATCAAAGACCAAAAA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp GAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATAGGTGTGAATTGAAAGCTTaGGGTTTCCCAATTATCACA +
Preference number: 5 (lower is better)
Translates to: EGPACTSSVVYELDSKHRCELKA*GFPIIT
Trigger: TGTGATAATTGGGAAACCCAAAGCTTTCAATTCACA...CCTATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTTTGTTTCTCCAACCTaGACTTATCCAGTCTTGGGA +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNFVSPT*TYPVLG
Trigger: TCCCAAGACTGGATAAGTCAAGGTTGGAGAAACAAA...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATATGAACTATGGTGGTTaGGGGTTGGATTTGTTGGTA +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNMNYGG*GLDLLV
Trigger: TACCAACAAATCCAACCCCAAACCACCATAGTTCAT...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATTAGACAGCAAGCATTTCAAACTGCCATTCTaGTGCTTTCCAATCTTTGTT +
Preference number: 5 (lower is better)
Translates to: FEGPACTSSVVYELDSKHFKLPF*CFPIFV
Trigger: AACAAAGATTGGAAAGCACAAGAATGGCAGTTTGAA...ATGCTTGCTGTCTAATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp AATCTTCAGATTGCTGTTGATCTCTTTGATATGATGTGGAAGAAGTaGTGTTTAGATCTTTGGATGAGCCTGAGCAAGGTGTATTGTTCT +
Preference number: 5 (lower is better)
Translates to: NLQIAVDLFDMMWKK*CLDLWMSLSKVYCS
Trigger: AGAACAATACACCTTGCTCAGGCTCATCCAAAGATCTAAACACCACTTCTTCCACATCATATCAAAGAGATCAACAGCAATCTGAAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGGCTTCAGAATTCGCCTaGGTTTATCATGGGACATTG +
Preference number: 5 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVASEFA*VYHGTL
Trigger: CAATGTCCCATGATAAACCAAGGCGAATTCTGAAGC...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp CTGCTTTCTCTTCATCTGGTTCCATTATCTGGCATCTGTGGTTTTTGGTTAGATTTGGGATTGGTTGTCTaGAAATGGTATGTTTTCAGA +
Preference number: 5 (lower is better)
Translates to: LLSLHLVPLSGICGFWLDLGLVV*KWYVFR
Trigger: TCTGAAAACATACCATTTCAAGACAACCAATCCCAA...ATCTAACCAAAAACCACAGATGCCAGATAATGGAACCAGATGAAGAGAAAGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTTGCTGATCTTCAGTTaGCTGATCTTCAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSLLIFS*LIFSLL
Trigger: CAGCAAGCTGAAGATCAGCAAACTGAAGATCAGCAA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTTGCTGATCTTGAGCTaGCTGATCTTCAGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSLLILS*LIFSLL
Trigger: CAGCAAACTGAAGATCAGCAAGCTCAAGATCAGCAA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp AAAGGTACAAGTTCTTTGAAGGTCCTGCATGCACTTCATCTGTGGTGTATGAATCTGGTTCTCTTTCTCTaGATTGAACATCATCTTCAT +
Preference number: 5 (lower is better)
Translates to: KGTSSLKVLHALHLWCMNLVLFL*IEHHLH
Trigger: ATGAAGATGATGTTCAATCAAGAGAAAGAGAACCAG...ATTCATACACCACAGATGAAGTGCATGCAGGACCTTCAAAGAACTTGTACCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp TTTACAGTTTACATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGCTGGGATGGAGTATTTaGGAATGGAGTATCTTGGAA +
Preference number: 5 (lower is better)
Translates to: FTVYMRFIPSTPEGSDIVLGWSI*EWSILE
Trigger: TTCCAAGATACTCCATTCCAAAATACTCCATCCCAG...CACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCATGTAAACTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCTATCCAGGCTTTGATTaGCTGATCTATGGATTTCCG +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSYPGFD*LIYGFP
Trigger: CGGAAATCCATAGATCAGCAAATCAAAGCCTGGATA...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp AGAGATGCCATTAATGATTGGGATGACAAATTGGCAGGTGAAAAATaGAGGGAATTATGTGAAGATGGAGTTTTAAATCTTGTGACTGAT +
Preference number: 5 (lower is better)
Translates to: RDAINDWDDKLAGEK*RELCEDGVLNLVTD
Trigger: ATCAGTCACAAGATTTAAAACTCCATCTTCACATAATTCCCTCCATTTTTCACCTGCCAATTTGTCATCCCAATCATTAATGGCATCTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 90 bp TGTTTATATTGTAAGACTTGTGTTGACAGAGATGCCATTAATGATTaGGATGACAAATTGGCAGGTGAAAAATGGAGGGAATTATGTGAA +
Preference number: 5 (lower is better)
Translates to: CLYCKTCVDRDAIND*DDKLAGEKWRELCE
Trigger: TTCACATAATTCCCTCCATTTTTCACCTGCCAATTTGTCATCCCAATCATTAATGGCATCTCTGTCAACACAAGTCTTACAATATAAACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS-3UTR CAA 90 bp ATGAGATTTATTCCTTCAACCCCAGAAGGTTCTGATATAGTGTTAACATTTAGCGTCAAGCAAATTGGATaGCATATCAGAAGTTTGATG +
Preference number: 5 (lower is better)
Translates to: MRFIPSTPEGSDIVLTFSVKQIG*HIRSLM
Trigger: CATCAAACTTCTGATATGCAATCCAATTTGCTTGAC...GCTAAATGTTAACACTATATCAGAACCTTCTGGGGTTGAAGGAATAAATCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TCGCCCACAACACATGGTCCTTCAAGGGAGGGTGTCTaGCAGACTCTGTGCTGCTGTGTAAAGCTGAGGAGG +
Preference number: 6 (lower is better)
Translates to: SPTTHGPSREGV*QTLCCCVKLRR
Trigger: CCTCCTCAGCTTTACACAGCAGCACAGAGTCTGCCAGACACCCTCCCTTGAAGGACCATGTGTTGTGGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TTGAGGTGGAGTCCCTTGGGATGGAGTACCTTGGGGTaGAGTTCCTTCAGATGGAGTCCCTTGGGGTGGAGT +
Preference number: 6 (lower is better)
Translates to: LRWSPLGWSTLG*SSFRWSPLGWS
Trigger: ACTCCACCCCAAGGGACTCCATCTGAAGGAACTCCACCCCAAGGTACTCCATCCCAAGGGACTCCACCTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp GTTCCTTGGGGTGAAGTCCCTTCAGATGGAGTCCCTTaGGGTGGAGTCATTTCAGATGGAGTCCCTTGGGGT +
Preference number: 6 (lower is better)
Translates to: VPWGEVPSDGVP*GGVISDGVPWG
Trigger: ACCCCAAGGGACTCCATCTGAAATGACTCCACCCCAAGGGACTCCATCTGAAGGGACTTCACCCCAAGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp GTCCCTTGGGATGGAGTCACTTCAGATGGAGTCCCTTaGGGTGGAGTCACTTCAGATGGAGACACTTGGAGT +
Preference number: 6 (lower is better)
Translates to: VPWDGVTSDGVP*GGVTSDGDTWS
Trigger: ACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAGTGACTCCATCCCAAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp GTCCCTTGGGGTGGAGTCATTTCAGATGGAGTCCCTTaGGGTGGAGTCACTTCAGATGGAGACACTTGGAGT +
Preference number: 6 (lower is better)
Translates to: VPWGGVISDGVP*GGVTSDGDTWS
Trigger: ACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAATGACTCCACCCCAAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TTGGGGTGGAGTCTCTTGGGGTACAGTCTCTTGAGATaGAGTCCCTTCAGATGGAGTCCCTTGAGGTGGAGT +
Preference number: 6 (lower is better)
Translates to: LGWSLLGYSLLR*SPFRWSPLRWS
Trigger: ACTCCACCTCAAGGGACTCCATCTGAAGGGACTCCATCTCAAGAGACTGTACCCCAAGAGACTCCACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp AGTCCCTTGGGATGGAGTCACTTCAGATGGAGTCCCTaGGGGTGGAGTCACTTCAGATGGAGACACTTGGAG +
Preference number: 6 (lower is better)
Translates to: SPLGWSHFRWSP*GWSHFRWRHLE
Trigger: CTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAGTGACTCCATCCCAAGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp AGTCCCTTGGGGTGGAGTCATTTCAGATGGAGTCCCTaGGGGTGGAGTCACTTCAGATGGAGACACTTGGAG +
Preference number: 6 (lower is better)
Translates to: SPLGWSHFRWSP*GWSHFRWRHLE
Trigger: CTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAATGACTCCACCCCAAGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp AGTCTCTTGAGATGGAGTCCCTTCAGATGGAGTCCCTaGAGGTGGAGTTCCTTCAGATGGAGTCTCTCGGGG +
Preference number: 6 (lower is better)
Translates to: SLLRWSPFRWSP*RWSSFRWSLSG
Trigger: CCCCGAGAGACTCCATCTGAAGGAACTCCACCTCAAGGGACTCCATCTGAAGGGACTCCATCTCAAGAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp TTGGGGTGGAGTCACTTCAGATGGAGACACTTGGAGTaGAGTCCCTTCAGATGGAGTCCCTTGGGATGGAGT +
Preference number: 6 (lower is better)
Translates to: LGWSHFRWRHLE*SPFRWSPLGWS
Trigger: ACTCCATCCCAAGGGACTCCATCTGAAGGGACTTCACTCCAAGTGTCTCCATCTGAAGTGACTCCACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TTCAGATGGAGTCCCTTGGGGTGGAGTCATTTCAGATaGAGTCCCTTGGGGTGGAGTCACTTCAGATGGAGA +
Preference number: 6 (lower is better)
Translates to: FRWSPLGWSHFR*SPLGWSHFRWR
Trigger: TCTCCATCTGAAGTGACTCCACCCCAAGGGACTCCATCTGAAATGACTCCACCCCAAGGGACTCCATCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 72 bp GTTAATGGGGGAGGTAGAGCATTCAGTTTGATTTCTTaGTCTGGGGAGAGTGGAGGAGTAGCCTCCTGTTCC +
Preference number: 6 (lower is better)
Translates to: VNGGGRAFSLIS*SGESGGVASCS
Trigger: GGAACAGGAGGCTACTCCTCCACTCTCCCCAGAGCAAGAAATCAAACTGAATGCTCTACCTCCCCCATTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp CAAAATTCCAAGGAGAAGTGTTTCGCCCACAACACATaGTCCTTCAAGGGAGGGTGTCTGGCAGACTCTGTG +
Preference number: 6 (lower is better)
Translates to: QNSKEKCFAHNT*SFKGGCLADSV
Trigger: CACAGAGTCTGCCAGACACCCTCCCTTGAAGGACCATGTGTTGTGGGCGAAACACTTCTCCTTGGAATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TCCCCTTGGGTGAAGTCCCTTGGGATGGAGTCCCTTTaGATAGAGTCCATTGAGATGGAGACTCTTGAGACA +
Preference number: 6 (lower is better)
Translates to: SPWVKSLGMESL*IESIEMETLET
Trigger: TGTCTCAAGAGTCTCCATCTCAATGGACTCTATCCAAAGGGACTCCATCCCAAGGGACTTCACCCAAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp GGGTATGGTGTTAATGGGGGAGGTAGAGCATTCAGTTaGATTTCTTGCTCTGGGGAGAGTGGAGGAGTAGCC +
Preference number: 6 (lower is better)
Translates to: GYGVNGGGRAFS*ISCSGESGGVA
Trigger: GGCTACTCCTCCACTCTCCCCAGAGCAAGAAATCAAACTGAATGCTCTACCTCCCCCATTAACACCATACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TGGGGCTTTCTGCTCTTTGGGTTGCTGATCTTCAACTaGTTGAACTTGAGCTTGCTCTTCTGGAGGTTGCTC +
Preference number: 6 (lower is better)
Translates to: WGFLLFGLLIFN*LNLSLLFWRLL
Trigger: GAGCAACCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TACTTGTCCTCCCTGCCAATTTTGGAGCTGGGTGTTTaGGGCTTTCTGCTCTTTGGGTTGCTGATCTTCAAC +
Preference number: 6 (lower is better)
Translates to: YLSSLPILELGV*GFLLFGLLIFN
Trigger: GTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAGGACAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp GCTCTCTTTACTAGTACTTGTCCTCCCTGCCAATTTTaGAGCTGGGTGTTTGGGGCTTTCTGCTCTTTGGGT +
Preference number: 6 (lower is better)
Translates to: ALFTSTCPPCQF*SWVFGAFCSLG
Trigger: ACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAGGACAAGTACTAGTAAAGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TTGGAGCTGGGTGTTTGGGGCTTTCTGCTCTTTGGGTaGCTGATCTTCAACTGGTTGAACTTGAGCTTGCTC +
Preference number: 6 (lower is better)
Translates to: LELGVWGFLLFG*LIFNWLNLSLL
Trigger: GAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp GTACTTGTCCTCCCTGCCAATTTTGGAGCTGGGTGTTaGGGGCTTTCTGCTCTTTGGGTTGCTGATCTTCAA +
Preference number: 6 (lower is better)
Translates to: VLVLPANFGAGC*GLSALWVADLQ
Trigger: TTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAGGACAAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp TGGGGCTTTCTGCTCTTTGGGTTGCTGATCTTCAACTGGTTGAACTaGAGCTTGCTCTTCTGGAGGTTGCTCTTTATCAGACTGCTGACC +
Preference number: 6 (lower is better)
Translates to: WGFLLFGLLIFNWLN*SLLFWRLLFIRLLT
Trigger: GGTCAGCAGTCTGATAAAGAGCAACCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 72 bp GTCAGTGAGCTGAGGACATTCATGGTCGTGACGCCTTaGTTCAGAATTCGCCTTGGTTTATCATGGGACATT +
Preference number: 6 (lower is better)
Translates to: VSELRTFMVVTP*FRIRLGLSWDI
Trigger: AATGTCCCATGATAAACCAAGGCGAATTCTGAAGCAAGGCGTCACGACCATGAATGTCCTCAGCTCACTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp CTCCTTGGTTTCTCACTTTTGACTTGCAGGTCCACAGAATATCTCTaGGGATGGACTTGCCCATGTTTGCCTGGCAAGGATAAGGAAAGT +
Preference number: 6 (lower is better)
Translates to: LLGFSLLTCRSTEYL*GWTCPCLPGKDKES
Trigger: ACTTTCCTTATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp TCTTTACTAGTACTTGTCCTCCCTGCCAATTTTGGAGCTGGGTGTTaGGGGCTTTCTGCTCTTTGGGTTGCTGATCTTCAACTGGTTGAA +
Preference number: 6 (lower is better)
Translates to: SLLVLVLPANFGAGC*GLSALWVADLQLVE
Trigger: TTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCCCCAAACACCCAGCTCCAAAATTGGCAGGGAGGACAAGTACTAGTAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 72 bp ACTTGCAGGTCCACAGAATATCTCTTGGGATGGACTTaGCCATGTTTGCCTGGCAAGGATAAGGAAAGTCTT +
Preference number: 6 (lower is better)
Translates to: TCRSTEYLLGWT*PCLPGKDKESL
Trigger: AAGACTTTCCTTATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp CTTTTGACTTGCAGGTCCACAGAATATCTCTTGGGATaGACTTGCCCATGTTTGCCTGGCAAGGATAAGGAA +
Preference number: 6 (lower is better)
Translates to: LLTCRSTEYLLG*TCPCLPGKDKE
Trigger: TTCCTTATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp GAGCACCTTCTGAAGGAAAGAAGAACACAGCCTCTCTaGGACTGGTCCAGCATCTGCTTCTTAAGGATACAA +
Preference number: 6 (lower is better)
Translates to: EHLLKERRTQPL*DWSSICFLRIQ
Trigger: TTGTATCCTTAAGAAGCAGATGCTGGACCAGTCCAAGAGAGGCTGTGTTCTTCTTTCCTTCAGAAGGTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TCCACAGAATATCTCTTGGGATGGACTTGCCCATGTTaGCCTGGCAAGGATAAGGAAAGTCTTCTTGTGGGT +
Preference number: 6 (lower is better)
Translates to: STEYLLGWTCPC*PGKDKESLLVG
Trigger: ACCCACAAGAAGACTTTCCTTATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TTCTCACTTTTGACTTGCAGGTCCACAGAATATCTCTaGGGATGGACTTGCCCATGTTTGCCTGGCAAGGAT +
Preference number: 6 (lower is better)
Translates to: FSLLTCRSTEYL*GWTCPCLPGKD
Trigger: ATCCTTGCCAGGCAAACATGGGCAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp GGCTTTCTGCTCTTTGGGTTGCTGATCTTCAACTGGTaGAACTTGAGCTTGCTCTTCTGGAGGTTGCTCTTT +
Preference number: 6 (lower is better)
Translates to: GFLLFGLLIFNW*NLSLLFWRLLF
Trigger: AAAGAGCAACCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAGAAAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp CCAATCTTTGTTTCTCCAACCTTGACTTATCCAGTCTaGGGATCTCTGGCTAATAGGCTGCCAGGATGGAGT +
Preference number: 6 (lower is better)
Translates to: PIFVSPTLTYPV*GSLANRLPGWS
Trigger: ACTCCATCCTGGCAGCCTATTAGCCAGAGATCCCAAGACTGGATAAGTCAAGGTTGGAGAAACAAAGATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp CAGTATTTTGAGCACCTTCTGAAGGAAAGAAGAACACAGCCTCTCTaGGACTGGTCCAGCATCTGCTTCTTAAGGATACAACAGTCACAG +
Preference number: 6 (lower is better)
Translates to: QYFEHLLKERRTQPL*DWSSICFLRIQQSQ
Trigger: CTGTGACTGTTGTATCCTTAAGAAGCAGATGCTGGACCAGTCCAAGAGAGGCTGTGTTCTTCTTTCCTTCAGAAGGTGCTCAAAATACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp GCTTGCTCTTCTGGAGGTTGCTCTTTATCAGACTGCTaGCCTTCATCCTCTCTGTCATTAGGATGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: ACSSGGCSLSDC*PSSSLSLGCSS
Trigger: AGAAGAACATCCTAATGACAGAGAGGATGAAGGTCAGCAGTCTGATAAAGAGCAACCTCCAGAAGAGCAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 72 bp AGAAGAACACAGCCTCTCTTGGACTGGTCCAGCATCTaGTTCTTAAGGATACAACAGTCACAGAGATGCTTA +
Preference number: 6 (lower is better)
Translates to: RRTQPLLDWSSI*FLRIQQSQRCL
Trigger: TAAGCATCTCTGTGACTGTTGTATCCTTAAGAAGCAGATGCTGGACCAGTCCAAGAGAGGCTGTGTTCTTCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp GCCCTTTGTCTTAAGGATTCTCTCTCTAATAGCTCTTaGGATTCCCAGTCTAGGGAAGGCTTCACTTCAAAC +
Preference number: 6 (lower is better)
Translates to: ALCLKDSLSNSS*DSQSREGFTSN
Trigger: GTTTGAAGTGAAGCCTTCCCTAGACTGGGAATCCCAAGAGCTATTAGAGAGAGAATCCTTAAGACAAAGGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp AGATTTTTGGTCTTTGATTTGCTCATCTTGGGATTGTaGTACTGGGACCTCCTCTTTGGCCTGCTGGTCATC +
Preference number: 6 (lower is better)
Translates to: RFLVFDLLILGL*YWDLLFGLLVI
Trigger: GATGACCAGCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TTCAACTGGTTGAACTTGAGCTTGCTCTTCTGGAGGTaGCTCTTTATCAGACTGCTGACCTTCATCCTCTCT +
Preference number: 6 (lower is better)
Translates to: FNWLNLSLLFWR*LFIRLLTFILS
Trigger: AGAGAGGATGAAGGTCAGCAGTCTGATAAAGAGCAACCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp CTGCTCTTTGGGTTGCTGATCTTCAACTGGTTGAACTaGAGCTTGCTCTTCTGGAGGTTGCTCTTTATCAGA +
Preference number: 6 (lower is better)
Translates to: LLFGLLIFNWLN*SLLFWRLLFIR
Trigger: TCTGATAAAGAGCAACCTCCAGAAGAGCAAGCTCAAGTTCAACCAGTTGAAGATCAGCAACCCAAAGAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp ATTCTCTATAGATTTTTGGTCTTTGATTTGCTCATCTTGGGATTGTaGTACTGGGACCTCCTCTTTGGCCTGCTGGTCATCAGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: ILYRFLVFDLLILGL*YWDLLFGLLVISLL
Trigger: CAGCAAGCTGATGACCAGCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS GCA 72 bp AGATCTTTGGATGAGCCTGAGCAAGGTGTATTGTTCTaGACCTCTTGCTCTGAAGCTATGTTGGATAAACAG +
Preference number: 6 (lower is better)
Translates to: RSLDEPEQGVLF*TSCSEAMLDKQ
Trigger: CTGTTTATCCAACATAGCTTCAGAGCAAGAGGTGCAGAACAATACACCTTGCTCAGGCTCATCCAAAGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp CTGATCTTCAGTTTGCTGATCTTCAGCTTGCTGATGTaGCAATTGGTCTGTGGTTTGGGTATATGCATCTTG +
Preference number: 6 (lower is better)
Translates to: LIFSLLIFSLLM*QLVCGLGICIL
Trigger: CAAGATGCATATACCCAAACCACAGACCAATTGCCACATCAGCAAGCTGAAGATCAGCAAACTGAAGATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp GTCCTCAGAATATCTCCTTGGTTTCTCACTTTTGACTaGCAGGTCCACAGAATATCTCTTGGGATGGACTTG +
Preference number: 6 (lower is better)
Translates to: VLRISPWFLTFD*QVHRISLGMDL
Trigger: CAAGTCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAAGGAGATATTCTGAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TATAGATTTTTGGTCTTTGATTTGCTCATCTTGGGATaGTTGTACTGGGACCTCCTCTTTGGCCTGCTGGTC +
Preference number: 6 (lower is better)
Translates to: YRFLVFDLLILG*LYWDLLFGLLV
Trigger: GACCAGCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp GTAAGTCCTCAGAATATCTCCTTGGTTTCTCACTTTTaGCTTGCAGGTCCACAGAATATCTCTTGGGATGGA +
Preference number: 6 (lower is better)
Translates to: VSPQNISLVSHF*LAGPQNISWDG
Trigger: TCCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAAGGAGATATTCTGAGGACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp TTCTCTATAGATTTTTGGTCTTTGATTTGCTCATCTTaGGATTGTTGTACTGGGACCTCCTCTTTGGCCTGC +
Preference number: 6 (lower is better)
Translates to: FSIDFWSLICSS*DCCTGTSSLAC
Trigger: GCAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TGTAAGTCCTCAGAATATCTCCTTGGTTTCTCACTTTaGACTTGCAGGTCCACAGAATATCTCTTGGGATGG +
Preference number: 6 (lower is better)
Translates to: CKSSEYLLGFSL*TCRSTEYLLGW
Trigger: CCATCCCAAGAGATATTCTGTGGACCTGCAAGTCAAAAGTGAGAAACCAAGGAGATATTCTGAGGACTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp TTGTTGCCTACTACCTTGACACAGACCTACTTGAAATATATAGTTTaGCAATTGATGACCTGGGGTCTGATGAACTATGGTGGTTTGGGG +
Preference number: 6 (lower is better)
Translates to: LLPTTLTQTYLKYIV*QLMTWGLMNYGGLG
Trigger: CCCCAAACCACCATAGTTCATCAGACCCCAGGTCATCAATTGCAAAACTATATATTTCAAGTAGGTCTGTGTCAAGGTAGTAGGCAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp ACAAGAAACAGGATAATTATCTGGCCTCATGTCTTCTaGCTGCTGGTCTGTTGGTTTCTGACATGTTTCTTC +
Preference number: 6 (lower is better)
Translates to: TRNRIIIWPHVF*LLVCWFLTCFF
Trigger: GAAGAAACATGTCAGAAACCAACAGACCAGCAGTCAGAAGACATGAGGCCAGATAATTATCCTGTTTCTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp AGGTCTATATGGATAGGCAGTCAAGACAGTTTCATTTaGGTCTATAGTGATGACATGGTTCCTTCTCTTCTC +
Preference number: 6 (lower is better)
Translates to: RSIWIGSQDSFI*VYSDDMVPSLL
Trigger: GAGAAGAGAAGGAACCATGTCATCACTATAGACCCAAATGAAACTGTCTTGACTGCCTATCCATATAGACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp ATTCTCTATAGATTTTTGGTCTTTGATTTGCTCATCTaGGGATTGTTGTACTGGGACCTCCTCTTTGGCCTG +
Preference number: 6 (lower is better)
Translates to: ILYRFLVFDLLI*GLLYWDLLFGL
Trigger: CAGGCCAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp ATGGAGTCTCTTGAGGTGGAGTCTCTTGATATAGTACATCTTGGTTaGGAGACTCTTGGGATTGAATCTCTTGGAATGATATGTCTTGAG +
Preference number: 6 (lower is better)
Translates to: MESLEVESLDIVHLG*ETLGIESLGMICLE
Trigger: CTCAAGACATATCATTCCAAGAGATTCAATCCCAAGAGTCTCCAAACCAAGATGTACTATATCAAGAGACTCCACCTCAAGAGACTCCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp ACCAGATTCAGAGTCTTGTTGCCTACTACCTTGACACAGACCTACTaGAAATATATAGTTTTGCAATTGATGACCTGGGGTCTGATGAAC +
Preference number: 6 (lower is better)
Translates to: TRFRVLLPTTLTQTY*KYIVLQLMTWGLMN
Trigger: GTTCATCAGACCCCAGGTCATCAATTGCAAAACTATATATTTCAAGTAGGTCTGTGTCAAGGTAGTAGGCAACAAGACTCTGAATCTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp CTTGAGGTGGAGTCTCTTGATATAGTACATCTTGGTTaGGAGACTCTTGGGATTGAATCTCTTGGAATGATA +
Preference number: 6 (lower is better)
Translates to: LEVESLDIVHLG*ETLGIESLGMI
Trigger: TATCATTCCAAGAGATTCAATCCCAAGAGTCTCCAAACCAAGATGTACTATATCAAGAGACTCCACCTCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp AGAGTCTTGTTGCCTACTACCTTGACACAGACCTACTaGAAATATATAGTTTTGCAATTGATGACCTGGGGT +
Preference number: 6 (lower is better)
Translates to: RVLLPTTLTQTY*KYIVLQLMTWG
Trigger: ACCCCAGGTCATCAATTGCAAAACTATATATTTCAAGTAGGTCTGTGTCAAGGTAGTAGGCAACAAGACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp TTAGGATGTTCTTCTGGTAGTAGATTCTCTATAGATTTTTGGTCTTaGATTTGCTCATCTTGGGATTGTTGTACTGGGACCTCCTCTTTG +
Preference number: 6 (lower is better)
Translates to: LGCSSGSRFSIDFWS*ICSSWDCCTGTSSL
Trigger: CAAAGAGGAGGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAATCTACTACCAGAAGAACATCCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp AGGATGGAGTTGACCAGAATGAACATGACTTTTCTGTaGATTGAAAGCTTTGGGTTTCCCAATTATCACACA +
Preference number: 6 (lower is better)
Translates to: RMELTRMNMTFL*IESFGFPNYHT
Trigger: TGTGTGATAATTGGGAAACCCAAAGCTTTCAATTCACAGAAAAGTCATGTTCATTCTGGTCAACTCCATCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp AATCTTCAGATTGCTGTTGATCTCTTTGATATGATGTaGAAGAAGTGGTGTTTAGATCTTTGGATGAGCCTG +
Preference number: 6 (lower is better)
Translates to: NLQIAVDLFDMM*KKWCLDLWMSL
Trigger: CAGGCTCATCCAAAGATCTAAACACCACTTCTTCCACATCATATCAAAGAGATCAACAGCAATCTGAAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TCTTCTGGTAGTAGATTCTCTATAGATTTTTGGTCTTaGATTTGCTCATCTTGGGATTGTTGTACTGGGACC +
Preference number: 6 (lower is better)
Translates to: SSGSRFSIDFWS*ICSSWDCCTGT
Trigger: GGTCCCAGTACAACAATCCCAAGATGAGCAAATCAAAGACCAAAAATCTATAGAGAATCTACTACCAGAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TTGACACAGACCTACTTGAAATATATAGTTTTGCAATaGATGACCTGGGGTCTGATGAACTATGGTGGTTTG +
Preference number: 6 (lower is better)
Translates to: LTQTYLKYIVLQ*MTWGLMNYGGL
Trigger: CAAACCACCATAGTTCATCAGACCCCAGGTCATCAATTGCAAAACTATATATTTCAAGTAGGTCTGTGTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp ACTACCTTGACACAGACCTACTTGAAATATATAGTTTaGCAATTGATGACCTGGGGTCTGATGAACTATGGT +
Preference number: 6 (lower is better)
Translates to: TTLTQTYLKYIV*QLMTWGLMNYG
Trigger: ACCATAGTTCATCAGACCCCAGGTCATCAATTGCAAAACTATATATTTCAAGTAGGTCTGTGTCAAGGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp AAGACTTGTGTTGACAGAGATGCCATTAATGATTGGGATGACAAATaGGCAGGTGAAAAATGGAGGGAATTATGTGAAGATGGAGTTTTA +
Preference number: 6 (lower is better)
Translates to: KTCVDRDAINDWDDK*AGEKWRELCEDGVL
Trigger: TAAAACTCCATCTTCACATAATTCCCTCCATTTTTCACCTGCCAATTTGTCATCCCAATCATTAATGGCATCTCTGTCAACACAAGTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 90 bp ACTGTGAAATATGGAATGATGGCTGTTTATATTGTAAGACTTGTGTaGACAGAGATGCCATTAATGATTGGGATGACAAATTGGCAGGTG +
Preference number: 6 (lower is better)
Translates to: TVKYGMMAVYIVRLV*TEMPLMIGMTNWQV
Trigger: CACCTGCCAATTTGTCATCCCAATCATTAATGGCATCTCTGTCAACACAAGTCTTACAATATAAACAGCCATCATTCCATATTTCACAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS TCA 72 bp AAATCTTGGAATGGAGTTTCTTGGTATGCAGTCTCTTaGGACGATCTGTCTTTAGTTAGTATATCTTGGAAT +
Preference number: 6 (lower is better)
Translates to: KSWNGVSWYAVS*DDLSLVSISWN
Trigger: ATTCCAAGATATACTAACTAAAGACAGATCGTCTCAAGAGACTGCATACCAAGAAACTCCATTCCAAGATTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CCA 72 bp ATATTCTGGGATGGAGTATTTTGGAATGGAGTATCTTaGAAGAAAATCTCTTGTGATGGAGTCTCTTTATAT +
Preference number: 6 (lower is better)
Translates to: IFWDGVFWNGVS*KKISCDGVSLY
Trigger: ATATAAAGAGACTCCATCACAAGAGATTTTCTTCCAAGATACTCCATTCCAAAATACTCCATCCCAGAATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2
CDS CAA 72 bp TATGGAATGATGGCTGTTTATATTGTAAGACTTGTGTaGACAGAGATGCCATTAATGATTGGGATGACAAAT +
Preference number: 6 (lower is better)
Translates to: YGMMAVYIVRLV*TEMPLMIGMTN
Trigger: ATTTGTCATCCCAATCATTAATGGCATCTCTGTCAACACAAGTCTTACAATATAAACAGCCATCATTCCATA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187467.2