Pregenerated sensors for MS4A13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057240Ensembl transcript IDs: ENSMUST00000073380.13, ENSMUST00000188464.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTAAATCTCATAGCCTGCATTCTACAGATTACAAGTGGTTTTTCTaGTCAACGGCAGATGATCTGCTGGGGAGAGTTGACATCTCTTTG | + |
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Preference number: 1 (lower is better) Translates to: SKSHSLHSTDYKWFF*STADDLLGRVDISL Trigger: CAAAGAGATGTCAACTCTCCCCAGCAGATCATCTGCCGTTGACCAGAAAAACCACTTGTAATCTGTAGAATGCAGGCTATGAGATTTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR GCA 90 bp | TTTCACCTTGTTGTGAATTTCCTTTTGCACAAAATGCATGAGGTGTaGCTTGTTATATGGGAATCTCATGGGCACCTACATCAGGTGTTA | + |
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Preference number: 1 (lower is better) Translates to: FHLVVNFLLHKMHEV*LVIWESHGHLHQVL Trigger: TAACACCTGATGTAGGTGCCCATGAGATTCCCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAATTCACAACAAGGTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CAA 90 bp | TTCTGGTCAACGGCAGATGATCTGCTGGGGAGAGTTGACATCTCTTaGGAGTGGCTAGCTAGCAAATGCTTTCTTGCGATGGTCTCATAC | + |
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Preference number: 2 (lower is better) Translates to: FWSTADDLLGRVDIS*EWLASKCFLAMVSY Trigger: GTATGAGACCATCGCAAGAAAGCATTTGCTAGCTAGCCACTCCAAAGAGATGTCAACTCTCCCCAGCAGATCATCTGCCGTTGACCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGACATCTCTTTGGAGTGGCTAGCTAGCAAATGCTTTCTTGCGATGGTCTCAGTGTGCCTTGTTATATaGGAATCTCATGGGCACCTA | + |
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Preference number: 2 (lower is better) Translates to: VDISLEWLASKCFLAMVSVCLVI*ESHGHL Trigger: TAGGTGCCCATGAGATTCCCATATAACAAGGCACAC...TGAGACCATCGCAAGAAAGCATTTGCTAGCTAGCCACTCCAAAGAGATGTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAACGTGGAATGTGCTTTTCACTTACAGGGAAAGAAATTAAAAATTTCCTCTTCTGCTGGGGAGAGTTaGCATCTCTTTGGAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: QNVECAFHLQGKKLKISSSAGES*HLFGVA Trigger: AGCCACTCCAAAGAGATGTCAACTCTCCCCAGCAGA...AGAGGAAATTTTTAATTTCTTTCCCTGTAAGTGAAAAGCACATTCCACGTTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAAAGGAACTTTAATGAGGTCAGGAAAAGCCTTGGGACAATAAAGGCACTAGACATCTCTTTGGAGTaGCTAGCTAGCAAATGCTTT | + |
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Preference number: 2 (lower is better) Translates to: AERNFNEVRKSLGTIKALDISLE*LASKCF Trigger: AAAGCATTTGCTAGCTAGCCACTCCAAAGAGATGTC...TAGTGCCTTTATTGTCCCAAGGCTTTTCCTGACCTCATTAAAGTTCCTTTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTTGGAGTGGCTAGCTAGCAAATGCTTTCTTGCGATGGTCTCATACTTACATAAAATGCATGAGGTGTaGCTTGTTATATGGGAATCT | + |
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Preference number: 2 (lower is better) Translates to: SLEWLASKCFLAMVSYLHKMHEV*LVIWES Trigger: AGATTCCCATATAACAAGGCACACCTCATGCATTTT...ATGTAAGTATGAGACCATCGCAAGAAAGCATTTGCTAGCTAGCCACTCCAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CCA 72 bp | CATAGCCTGCATTCTACAGATTACAAGTGGTTTTTCTaGTCAACGGCAGATGATCTGCTGGGGAGAGTTGAC | + |
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Preference number: 3 (lower is better) Translates to: HSLHSTDYKWFF*STADDLLGRVD Trigger: GTCAACTCTCCCCAGCAGATCATCTGCCGTTGACCAGAAAAACCACTTGTAATCTGTAGAATGCAGGCTATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CCA 72 bp | CTTTTGCACAAAATGCATGAGGTGTGCCTTGTTATATaGGAATCTCATGGGCACCTACATCAGGTGTTAGCA | + |
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Preference number: 3 (lower is better) Translates to: LLHKMHEVCLVI*ESHGHLHQVLA Trigger: TGCTAACACCTGATGTAGGTGCCCATGAGATTCCCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CCA 72 bp | TCTAAATCTCATAGCCTGCATTCTACAGATTACAAGTaGTTTTTCTGGTCAACGGCAGATGATCTGCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: SKSHSLHSTDYK*FFWSTADDLLG Trigger: CCCCAGCAGATCATCTGCCGTTGACCAGAAAAACCACTTGTAATCTGTAGAATGCAGGCTATGAGATTTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAAAGGAACTTTAATGAGGTCAGGAAAAGCCTTGGGACAATAAAGGCACTACTAGCAAATGCTTTCTaGCGATGGTCTCATACTTAC | + |
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Preference number: 3 (lower is better) Translates to: AERNFNEVRKSLGTIKALLANAF*RWSHTY Trigger: GTAAGTATGAGACCATCGCAAGAAAGCATTTGCTAG...TAGTGCCTTTATTGTCCCAAGGCTTTTCCTGACCTCATTAAAGTTCCTTTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR TCA 72 bp | TCACCTTGTTGTGAATTTCCTTTTGCACAAAATGCATaGGGTGTGCCTTGTTATATGGGAATCTCATGGGCA | + |
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Preference number: 3 (lower is better) Translates to: SPCCEFPFAQNA*GVPCYMGISWA Trigger: TGCCCATGAGATTCCCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAATTCACAACAAGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CAA 72 bp | ACGGCAGATGATCTGCTGGGGAGAGTTGACATCTCTTaGGAGTGGCTAGCTAGCAAATGCTTTCTTGCGATG | + |
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Preference number: 4 (lower is better) Translates to: TADDLLGRVDIS*EWLASKCFLAM Trigger: CATCGCAAGAAAGCATTTGCTAGCTAGCCACTCCAAAGAGATGTCAACTCTCCCCAGCAGATCATCTGCCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR TCA 90 bp | GTTGACATCTCTTTGGAGTGGCTAGCTAGCAAATGCTTTCTTGCGATGGTCTCATGCACAACTAGAGATTaGGTACAAGAGGGCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: VDISLEWLASKCFLAMVSCTTRD*VQEGNG Trigger: GCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCA...TGAGACCATCGCAAGAAAGCATTTGCTAGCTAGCCACTCCAAAGAGATGTCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CAA 72 bp | CCATTTGAGCCTCGCTTTGTGGAGGTAGAAGCTAGCTaGAGCAGAAGAATGCAGAACGTGGAATGTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PFEPRFVEVEAS*SRRMQNVECAF Trigger: AAAAGCACATTCCACGTTCTGCATTCTTCTGCTCAAGCTAGCTTCTACCTCCACAAAGCGAGGCTCAAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR GCA 90 bp | GGTGTGCCTTGTTATATGGGAATCTCATGGGCACCTACATCAGGTGTTAGCAGCTTCCCTTCCCAGCTTTaGTTGTCCATAATTTCTATA | + |
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Preference number: 4 (lower is better) Translates to: GVPCYMGISWAPTSGVSSFPSQL*LSIISI Trigger: TATAGAAATTATGGACAAGCAAAGCTGGGAAGGGAA...GCTGCTAACACCTGATGTAGGTGCCCATGAGATTCCCATATAACAAGGCACACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR TCA 90 bp | ATTTCCTTTTGCACAAAATGCATGAGGTGTGCCTTGTTATATGGGAATCTCATGTGCACAACTAGAGATTaGGTACAAGAGGGCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: ISFCTKCMRCALLYGNLMCTTRD*VQEGNG Trigger: GCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCA...CATGAGATTCCCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| 3UTR CAA 72 bp | CCAAGGGATAACTTTCACCTTGTTGTGAATTTCCTTTaGCACAAAATGCATGAGGTGTGCCTTGTTATATGG | + |
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Preference number: 4 (lower is better) Translates to: PRDNFHLVVNFL*HKMHEVCLVIW Trigger: CCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAATTCACAACAAGGTGAAAGTTATCCCTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR GCA 90 bp | CTTGTTGTGAATTTCCTTTTGCACAAAATGCATGAGGTGTGCCTTGTTATATGGACTTTGATATTTTGCTaGTTTTACAGTGAAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LVVNFLLHKMHEVCLVIWTLIFC*FYSEGP Trigger: GGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGT...CCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAATTCACAACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR GCA 90 bp | CAGAACGTGGAATGTGCTTTTCACTTACAGGGAAAGAAATTAAAAATTTCCTCTACTTTGATATTTTGCTaGTTTTACAGTGAAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QNVECAFHLQGKKLKISSTLIFC*FYSEGP Trigger: GGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGT...AGAGGAAATTTTTAATTTCTTTCCCTGTAAGTGAAAAGCACATTCCACGTTCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR GCA 90 bp | CTTGTTGTGAATTTCCTTTTGCACAAAATGCATGAGGTGTGCCTTGTTATATGGTCTACTTTGATATTTTaGTGCTTTTACAGTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: LVVNFLLHKMHEVCLVIWSTLIF*CFYSEG Trigger: GCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGA...CCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAATTCACAACAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS-3UTR GCA 90 bp | ATTTCCTTTTGCACAAAATGCATGAGGTGTGCCTTGTTATATGGGAATCTCATGTCTACTTTGATATTTTaGTGCTTTTACAGTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: ISFCTKCMRCALLYGNLMSTLIF*CFYSEG Trigger: GCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGA...CATGAGATTCCCATATAACAAGGCACACCTCATGCATTTTGTGCAAAAGGAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS CCA 90 bp | GAGTTGCCTTCCACTACTTCAGTAACACTTTCTAAAGTTTCCTCTTaGTTTCCGGCCAAATATGCACAACTAGAGATTGAGTACAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: ELPSTTSVTLSKVSS*FPAKYAQLEIEYKR Trigger: CCTCTTGTACTCAATCTCTAGTTGTGCATATTTGGCCGGAAACCAAGAGGAAACTTTAGAAAGTGTTACTGAAGTAGTGGAAGGCAACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188464.2 |
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| CDS-3UTR CAA 90 bp | ATATGGGAATCTCATGGGCACCTACATCAGGTGTTAGCAGCCATGAAAGTTGCTCCAATGACTTCACAATaGAACTTAAGGGCAAATATG | + |
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Preference number: 5 (lower is better) Translates to: IWESHGHLHQVLAAMKVAPMTSQ*NLRANM Trigger: CATATTTGCCCTTAAGTTCAATTGTGAAGTCATTGG...AGCAACTTTCATGGCTGCTAACACCTGATGTAGGTGCCCATGAGATTCCCATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073380.13 |
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| CDS TCA 72 bp | CAAGCCAAATCATCTGTCTCCAAGCAGCAAGGCTGCTaGGCCTCCAAGTTTTCCTCACCAATGACTTCACAA | + |
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Preference number: 6 (lower is better) Translates to: QAKSSVSKQQGC*ASKFSSPMTSQ Trigger: TTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073380.13 |
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| CDS TCA 72 bp | CTCTTGGTTTCCGGCCAAATATGCACAACTAGAGATTaGGTACAAGAGGGCAATGGCGAATTCCAGGGGGTA | + |
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Preference number: 6 (lower is better) Translates to: LLVSGQICTTRD*VQEGNGEFQGV Trigger: TACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTGGCCGGAAACCAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000188464.2 |
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| CDS CAA 90 bp | GGGGGTAGGAGCACAACAAAACACGGGACACTTCCCTTCCCAGCTTaGCTTGTCCATAATTTCTATATGACACCGAACGGAAATGAGACA | + |
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Preference number: 6 (lower is better) Translates to: GGRSTTKHGTLPFPA*LVHNFYMTPNGNET Trigger: TGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCAAAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073380.13 ENSMUST00000188464.2 |
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| CDS CCA 72 bp | TCCACTACTTCAGTAACACTTTCTAAAGTTTCCTCTTaGTTTCCGGCCTCAAGCCAAATCATCTGTCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: STTSVTLSKVSS*FPASSQIICLQ Trigger: TTGGAGACAGATGATTTGGCTTGAGGCCGGAAACCAAGAGGAAACTTTAGAAAGTGTTACTGAAGTAGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073380.13 |
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| CDS CCA 72 bp | TCCACTACTTCAGTAACACTTTCTAAAGTTTCCTCTTaGTTTCCGGCCAAATATGCACAACTAGAGATTGAG | + |
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Preference number: 6 (lower is better) Translates to: STTSVTLSKVSS*FPAKYAQLEIE Trigger: CTCAATCTCTAGTTGTGCATATTTGGCCGGAAACCAAGAGGAAACTTTAGAAAGTGTTACTGAAGTAGTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188464.2 |
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