Pregenerated sensors for MS4A12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000101031Ensembl transcript IDs: ENSMUST00000186228.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGTGGTGGTGGTTTATGGGATGGATCCTCAGGTGGGGCAGTTTCTaGATGGTCCTTCCTTCAGTCTCTGCTCCAAACTTTGTCTCTGTA | + |
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Preference number: 1 (lower is better) Translates to: VWWWFMGWILRWGSF*MVLPSVSAPNFVSV Trigger: TACAGAGACAAAGTTTGGAGCAGAGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR GCA 90 bp | GAGACAGCTATATCAGGATCCCGACAGCAAGCTCTTGTTGGCATCTaGAATAATGTCTGGGTGTGGTGGTGGTTTATGGGATGGATCCTC | + |
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Preference number: 1 (lower is better) Translates to: ETAISGSRQQALVGI*NNVWVWWWFMGWIL Trigger: GAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAGAGCTTGCTGTCGGGATCCTGATATAGCTGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 90 bp | CCACCATGTGTTTTCTTTGAGTGGTGGTTTAGTCCCAGGGAGCTCTaGGGTTACTGGTTAGTTCATATTGTTCCTCCTAGGGGGCTGCAA | + |
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Preference number: 1 (lower is better) Translates to: PPCVFFEWWFSPREL*GYWLVHIVPPRGLQ Trigger: TTGCAGCCCCCTAGGAGGAACAATATGAACTAACCAGTAACCCCAGAGCTCCCTGGGACTAAACCACCACTCAAAGAAAACACATGGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR-3UTR CCA 90 bp | CCCATTCCTGCTTCCTGGCCCAGGCATTCCCCTATACTGGGGGCATCGAACCTTGTAATGGTAAGCAGTTaGCAGGGAGGCACTGACAGA | + |
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Preference number: 2 (lower is better) Translates to: PIPASWPRHSPILGASNLVMVSS*QGGTDR Trigger: TCTGTCAGTGCCTCCCTGCCAACTGCTTACCATTAC...AAGGTTCGATGCCCCCAGTATAGGGGAATGCCTGGGCCAGGAAGCAGGAATGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR-3UTR GCA 90 bp | GCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCCCTTCCTTCAGTCTCTaGTCCAAACTTTGTCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: AQAEPLRRQLYQDPDSKLPSFSL*SKLCLC Trigger: ACAGAGACAAAGTTTGGAGCAGAGACTGAAGGAAGG...GAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR-3UTR CCA 90 bp | GCTGCAAACCCCTTCAGCTTCTTGGGTACTTTCTCTAGCTCCTTCCTTTGGGGAATCTGCAATAATGTCTaGGTGTGGTGGTGGTTTATG | + |
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Preference number: 2 (lower is better) Translates to: AANPFSFLGTFSSSFLWGICNNV*VWWWFM Trigger: CATAAACCACCACCACACCCAGACATTATTGCAGAT...TCCCCAAAGGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGGGTTTGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR-3UTR CCA 90 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTAAAGTATCCACACTTTaGTCTTCCTTCTTCTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: LWDGSSGGAVSGWSFLQSKVSTL*SSFFLS Trigger: ACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTT...AGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CAA 90 bp | GTCTCTGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTaGTCCCTCCTTCTAGGAAGGATCAAAGTATCCACACTTTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: VSAPNFVSVTPSMGI*SLLLGRIKVSTLWS Trigger: AGACCAAAGTGTGGATACTTTGATCCTTCCTAGAAGGAGGGACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCAGAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | GCATCTGCAATAATGTCTGGGTGTGGTGGTGGTTTATaGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGG | + |
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Preference number: 3 (lower is better) Translates to: ASAIMSGCGGGL*DGSSGGAVSGW Trigger: CCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | GCTCTTGTTGGCATCTGCAATAATGTCTGGGTGTGGTaGTGGTTTATGGGATGGATCCTCAGGTGGGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: ALVGICNNVWVW*WFMGWILRWGS Trigger: ACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | CAAGCTCTTGTTGGCATCTGCAATAATGTCTGGGTGTaGTGGTGGTTTATGGGATGGATCCTCAGGTGGGGC | + |
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Preference number: 3 (lower is better) Translates to: QALVGICNNVWV*WWFMGWILRWG Trigger: GCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAGAGCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | GAGTGGTGGTTTAGTCCCAGGGAGCTCTGGGGTTACTaGTTAGTTCATATTGTTCCTCCTAGGGGGCTGCAA | + |
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Preference number: 3 (lower is better) Translates to: EWWFSPRELWGY*LVHIVPPRGLQ Trigger: TTGCAGCCCCCTAGGAGGAACAATATGAACTAACCAGTAACCCCAGAGCTCCCTGGGACTAAACCACCACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR GCA 72 bp | GTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTCTaGTCCAAACTTTGTCTCTGTAACTCCTTCCATGGG | + |
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Preference number: 3 (lower is better) Translates to: VGQFLDGPSFSL*SKLCLCNSFHG Trigger: CCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCAGAGACTGAAGGAAGGACCATCCAGAAACTGCCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | CTTGTTGGCATCTGCAATAATGTCTGGGTGTGGTGGTaGTTTATGGGATGGATCCTCAGGTGGGGCAGTTTC | + |
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Preference number: 3 (lower is better) Translates to: LVGICNNVWVWW*FMGWILRWGSF Trigger: GAAACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | CGACAGCAAGCTCTTGTTGGCATCTGCAATAATGTCTaGGTGTGGTGGTGGTTTATGGGATGGATCCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: RQQALVGICNNV*VWWWFMGWILR Trigger: CCTGAGGATCCATCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAGAGCTTGCTGTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATaGTCCTTCCTTCAGTCTCTGCTCCAAACTTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: LWDGSSGGAVSG*SFLQSLLQTLS Trigger: AGACAAAGTTTGGAGCAGAGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR TCA 72 bp | CTAGGCAATCCTCTGCTACATGTGCAGCTAGAGCCATaGGTCCCACCATGTGTTTTCTTTGAGTGGTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: LGNPLLHVQLEP*VPPCVFFEWWF Trigger: AAACCACCACTCAAAGAAAACACATGGTGGGACTCATGGCTCTAGCTGCACATGTAGCAGAGGATTGCCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR GCA 72 bp | ATATCAGGATCCCGACAGCAAGCTCTTGTTGGCATCTaGAATAATGTCTGGGTGTGGTGGTGGTTTATGGGA | + |
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Preference number: 3 (lower is better) Translates to: ISGSRQQALVGI*NNVWVWWWFMG Trigger: TCCCATAAACCACCACCACACCCAGACATTATTGCAGATGCCAACAAGAGCTTGCTGTCGGGATCCTGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR-3UTR CAA 90 bp | CCATGTGTTTTCTTTGAGTGGTGGTTTAGTCCCAGGGAGCTCTGGGGTTACTGGCAAAGTATCCACACTTaGGTCTTCCTTCTTCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: PCVFFEWWFSPRELWGYWQSIHT*VFLLLE Trigger: CTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTTG...CCAGTAACCCCAGAGCTCCCTGGGACTAAACCACCACTCAAAGAAAACACATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CCA 72 bp | TTTTGTCTTTCCTTTATTGCAGTAATGGTAAGCAGTTaGCAGGGAGGCACTGACAGAAAATCCAGTGACTGT | + |
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Preference number: 3 (lower is better) Translates to: FCLSFIAVMVSS*QGGTDRKSSDC Trigger: ACAGTCACTGGATTTTCTGTCAGTGCCTCCCTGCCAACTGCTTACCATTACTGCAATAAAGGAAAGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR TCA 90 bp | GCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCAGAGGTTGTGGAGGATaGGGAGCCATGGATCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: AQAEPLRRQLYQDPDSKLRGCGG*GAMDLV Trigger: AACAAGATCCATGGCTCCTCATCCTCCACAACCTCT...GAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTGGGTGTGGTGGTGGTTTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGCCACATACACAGCTaGAGCAACCGGGACAGATCT | + |
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Preference number: 4 (lower is better) Translates to: MSGCGGGLWDGSSGGAVSGHIHS*SNRDRS Trigger: AGATCTGTCCCGGTTGCTCCAGCTGTGTATGTGGCC...AGAAACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | GTCTGGGTGTGGTGGTGGTTTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGCATGGATCTTGTTGGTaGGCAAGGATTTGGAATGCC | + |
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Preference number: 4 (lower is better) Translates to: VWVWWWFMGWILRWGSFWHGSCW*ARIWNA Trigger: GGCATTCCAAATCCTTGCCCACCAACAAGATCCATG...CCAGAAACTGCCCCACCTGAGGATCCATCCCATAAACCACCACCACACCCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR TCA 90 bp | CACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCTCTCTTCATCAGACAGTaGGAGAACTCCTTGAACGCT | + |
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Preference number: 4 (lower is better) Translates to: HRQSLSGDSYIRIPTASSLFIRQ*ENSLNA Trigger: AGCGTTCAAGGAGTTCTCTCACTGTCTGATGAAGAG...AGAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | GCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCTTGGACTCCCCCAAGTaGTATTGCTGCATCTTTAAC | + |
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Preference number: 4 (lower is better) Translates to: AQAEPLRRQLYQDPDSKLLDSPK*YCCIFN Trigger: GTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAA...GAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | GCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCAGCCATGGATCTTGTTaGTGGGCAAGGATTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: AQAEPLRRQLYQDPDSKLSHGSC*WARIWN Trigger: ATTCCAAATCCTTGCCCACCAACAAGATCCATGGCT...GAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | GCTGCAAACCCCTTCAGCTTCTTGGGTACTTTCTCTAGCTCCTTCCTTTGGGGAGAGGATGAGGAGCCATaGATCTTGTTGGTGGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: AANPFSFLGTFSSSFLWGEDEEP*ILLVGK Trigger: CTTGCCCACCAACAAGATCCATGGCTCCTCATCCTC...TCCCCAAAGGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGGGTTTGCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | GCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCCAACAAGGAAAATATTaGCAGCACACCTGCAATTCC | + |
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Preference number: 4 (lower is better) Translates to: AQAEPLRRQLYQDPDSKLQQGKY*QHTCNS Trigger: GGAATTGCAGGTGTGCTGGCAATATTTTCCTTGTTG...GAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR TCA 90 bp | GGTGGTTTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTTGGCCCCTGCTATGCTaGATTCCAACAAGGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: GGLWDGSSGGAVSGWSFLWPLLC*IPTRKI Trigger: TATTTTCCTTGTTGGAATTCAGCATAGCAGGGGCCA...AAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAAACCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | GGCAGAGCCTCTCAGGAGACAGCTATATCAGGATCCCGACAGCAAGCTCTTGTTGACTCCACCCCAGAATaGATATCCACCAATAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: GRASQETAISGSRQQALVDSTPE*ISTNKS Trigger: GCTTTTATTGGTGGATATCCATTCTGGGGTGGAGTC...AACAAGAGCTTGCTGTCGGGATCCTGATATAGCTGTCTCCTGAGAGGCTCTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | TCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTCCCTCCTTCTAGGCTCGCATCAAGGGGTTaGCCACATACACAGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SKLCLCNSFHGYFVPPSRLASRG*PHTQLE Trigger: CTCCAGCTGTGTATGTGGCCAACCCCTTGATGCGAG...CCTAGAAGGAGGGACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTTCCCCCAAGTGCTATTaGTGCATCTTTAACATTGCT | + |
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Preference number: 4 (lower is better) Translates to: LWDGSSGGAVSGWSFLQSSPKCY*CIFNIA Trigger: AGCAATGTTAAAGATGCAGCAATAGCACTTGGGGGA...AGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | CCATGTGTTTTCTTTGAGTGGTGGTTTAGTCCCAGGGAGCTCTGGGGTTACTGGTGTTTATTATCAGGGTaGTCTTCATCAGACAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: PCVFFEWWFSPRELWGYWCLLSG*SSSDSE Trigger: CTCACTGTCTGATGAAGAGCACCCTGATAATAAACA...CCAGTAACCCCAGAGCTCCCTGGGACTAAACCACCACTCAAAGAAAACACATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | CTGCAAACCCCTTCAGCTTCTTGGGTACTTTCTCTAGCTCCTTCCTTTGGGGAAGTAATGAAGGAAACTTaGCCAGTCTGTACTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LQTPSASWVLSLAPSFGEVMKET*PVCTWF Trigger: AAACCAAGTACAGACTGGGCAAGTTTCCTTCATTAC...TTCCCCAAAGGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGGGTTTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CCA 90 bp | TTTTGTCTTTCCTTTATTGCAGTAATGGTAAGCAGTTGGCAGGGAGGCACTGACAAAATTCAGAGGTTGTaGAGGATGAGGAGCCATGGA | + |
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Preference number: 4 (lower is better) Translates to: FCLSFIAVMVSSWQGGTDKIQRL*RMRSHG Trigger: TCCATGGCTCCTCATCCTCCACAACCTCTGAATTTT...GTCAGTGCCTCCCTGCCAACTGCTTACCATTACTGCAATAAAGGAAAGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| 3UTR CAA 72 bp | GTCCCTCCTTCTAGGAAGGATCAAAGTATCCACACTTaGGTCTTCCTTCTTCTTGAGTTGAATAGAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: VPPSRKDQSIHT*VFLLLELNRRF Trigger: AAACCTTCTATTCAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTTGATCCTTCCTAGAAGGAGGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR GCA 90 bp | ACAAATTCCAAATATAACACTAAAGAGATTTGCACTCCGGGCAGCAAAATAACACCCAAGTGCTATTGCTaGATCTTTAACATTGCTTAT | + |
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Preference number: 4 (lower is better) Translates to: TNSKYNTKEICTPGSKITPKCYC*IFNIAY Trigger: ATAAGCAATGTTAAAGATGCAGCAATAGCACTTGGG...TGTTATTTTGCTGCCCGGAGTGCAAATCTCTTTAGTGTTATATTTGGAATTTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CAA 90 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTGAGGAGCCATGGATCTaGTTGGTGGGCAAGGATTTG | + |
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Preference number: 5 (lower is better) Translates to: LWDGSSGGAVSGWSFLQSEEPWI*LVGKDL Trigger: CAAATCCTTGCCCACCAACAAGATCCATGGCTCCTC...AGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CAA 90 bp | ACTTCTGTATTAGTCAGGCACAGGCAGAGCCTCTCAGGAGACAGCTATATCAGGGAGCCATGGATCTTGTaGGTGGGCAAGGATTTGGAA | + |
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Preference number: 5 (lower is better) Translates to: TSVLVRHRQSLSGDSYIREPWIL*VGKDLE Trigger: TTCCAAATCCTTGCCCACCAACAAGATCCATGGCTC...CCTGATATAGCTGTCTCCTGAGAGGCTCTGCCTGTGCCTGACTAATACAGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CAA 90 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTGCTGCATCTTTAACATaGCTTATTGCTGCTCCTAGA | + |
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Preference number: 5 (lower is better) Translates to: LWDGSSGGAVSGWSFLQSAASLT*LIAAPR Trigger: TCTAGGAGCAGCAATAAGCAATGTTAAAGATGCAGC...AGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS TCA 90 bp | TCCACCAATAAAAGCAACAGAGGAAAACGCCCAAGTCATATTGTATaGGGTGCTCAGCAACCCGAGAACAACTCCAAAGCCGATGTGCAT | + |
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Preference number: 5 (lower is better) Translates to: STNKSNRGKRPSHIV*GAQQPENNSKADVH Trigger: ATGCACATCGGCTTTGGAGTTGTTCTCGGGTTGCTGAGCACCTCATACAATATGACTTGGGCGTTTTCCTCTGTTGCTTTTATTGGTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CCA 90 bp | CGTTGGCACATTTTCTCGACCCAGCTGTGTGTTAGGGAAGATTCCTaGAGATGTAATGAAGGAAACTTGCCCAGTCTGTACTTGGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: RWHIFSTQLCVREDS*RCNEGNLPSLYLVS Trigger: AGAAACCAAGTACAGACTGGGCAAGTTTCCTTCATTACATCTCCAGGAATCTTCCCTAACACACAGCTGGGTCGAGAAAATGTGCCAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS-3UTR CAA 90 bp | TTATGGGATGGATCCTCAGGTGGGGCAGTTTCTGGATGGTCCTTCCTTCAGTCTCACCATCCAGTAGTCTaGATAATAGTAGCCATTGAT | + |
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Preference number: 5 (lower is better) Translates to: LWDGSSGGAVSGWSFLQSHHPVV*IIVAID Trigger: ATCAATGGCTACTATTATCAAGACTACTGGATGGTG...AGACTGAAGGAAGGACCATCCAGAAACTGCCCCACCTGAGGATCCATCCCATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CCA 90 bp | CCGAGAACAACTCCAAAGCCGATGTGCATCAATCCAATTGTGATTTaGACTCCCCCAAGTGCTATTGCTGCATCTTTAACATTGCTTATT | + |
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Preference number: 5 (lower is better) Translates to: PRTTPKPMCINPIVI*TPPSAIAASLTLLI Trigger: AATAAGCAATGTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCACATCGGCTTTGGAGTTGTTCTCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CAA 72 bp | ATAGGAGGAGCTGAGGGAGACTCTCGCATCAAGGGGTaGGCCACATACACAGCTGGAGCAACCGGGACAGAT | + |
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Preference number: 6 (lower is better) Translates to: IGGAEGDSRIKG*ATYTAGATGTD Trigger: ATCTGTCCCGGTTGCTCCAGCTGTGTATGTGGCCAACCCCTTGATGCGAGAGTCTCCCTCAGCTCCTCCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CCA 72 bp | AGGTTGTGGAGGATGAGGAGCCATGGATCTTGTTGGTaGGCAAGGATTTGGAATGCCACGCGTTCCAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: RLWRMRSHGSCW*ARIWNATRSRV Trigger: TACCCTGGAACGCGTGGCATTCCAAATCCTTGCCCACCAACAAGATCCATGGCTCCTCATCCTCCACAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS GCA 72 bp | GCTGAATTCCAACAAGGAAAATATTGCCAGCACACCTaGAATTCCTCTCCCAGAAAGCACCATCCAGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: AEFQQGKYCQHT*NSSPRKHHPVV Trigger: GACTACTGGATGGTGCTTTCTGGGAGAGGAATTGCAGGTGTGCTGGCAATATTTTCCTTGTTGGAATTCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS TCA 72 bp | GAACAACTCCAAAGCCGATGTGCATCAATCCAATTGTaGTTTGGACTCCCCCAAGTGCTATTGCTGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: EQLQSRCASIQL*FGLPQVLLLHL Trigger: AAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCACATCGGCTTTGGAGTTGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CCA 72 bp | ATTTTCTCGACCCAGCTGTGTGTTAGGGAAGATTCCTaGAGATGTAATGAAGGAAACTTGCCCAGTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: IFSTQLCVREDS*RCNEGNLPSLY Trigger: GTACAGACTGGGCAAGTTTCCTTCATTACATCTCCAGGAATCTTCCCTAACACACAGCTGGGTCGAGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CAA 72 bp | TGGACTCCCCCAAGTGCTATTGCTGCATCTTTAACATaGCTTATTGCTGCTCCTAGAGCTGGATTTACCGTT | + |
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Preference number: 6 (lower is better) Translates to: WTPPSAIAASLT*LIAAPRAGFTV Trigger: AACGGTAAATCCAGCTCTAGGAGCAGCAATAAGCAATGTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CAA 90 bp | CCCGAGAACAACTCCAAAGCCGATGTGCATCAATCCAATTGTGATTaGGACTCCCCCAAGTGCTATTGCTGCATCTTTAACATTGCTTAT | + |
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Preference number: 6 (lower is better) Translates to: PENNSKADVHQSNCD*DSPKCYCCIFNIAY Trigger: ATAAGCAATGTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCACATCGGCTTTGGAGTTGTTCTCGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CCA 72 bp | ACTCCAAAGCCGATGTGCATCAATCCAATTGTGATTTaGACTCCCCCAAGTGCTATTGCTGCATCTTTAACA | + |
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Preference number: 6 (lower is better) Translates to: TPKPMCINPIVI*TPPSAIAASLT Trigger: TGTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCACATCGGCTTTGGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS CAA 72 bp | AACTCCAAAGCCGATGTGCATCAATCCAATTGTGATTaGGACTCCCCCAAGTGCTATTGCTGCATCTTTAAC | + |
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Preference number: 6 (lower is better) Translates to: NSKADVHQSNCD*DSPKCYCCIFN Trigger: GTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCACATCGGCTTTGGAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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| CDS GCA 72 bp | GTGCATCAATCCAATTGTGATTTGGACTCCCCCAAGTaGTATTGCTGCATCTTTAACATTGCTTATTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VHQSNCDLDSPK*YCCIFNIAYCC Trigger: GCAGCAATAAGCAATGTTAAAGATGCAGCAATAGCACTTGGGGGAGTCCAAATCACAATTGGATTGATGCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186228.3 |
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