Pregenerated sensors for MS4A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024673Ensembl transcript IDs: ENSMUST00000169159.3
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCGTGCTGTGGCTTGTAAGTGGGCAGAACTTAGTAAAGACCTACTaGATGAGTAAACTCCTTGGGAGCATGTGTCAGATAGGTAGGAAT | + |
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Preference number: 1 (lower is better) Translates to: IVLWLVSGQNLVKTY*MSKLLGSMCQIGRN Trigger: ATTCCTACCTATCTGACACATGCTCCCAAGGAGTTTACTCATCCAGTAGGTCTTTACTAAGTTCTGCCCACTTACAAGCCACAGCACGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 90 bp | AAACTCCTTGGGAGCATGTGTCAGATAGGTAGGAATAGCTCAATATaGCTGGATGTGCCACTATTCAAACACAGGTTAGTATTATGTGGC | + |
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Preference number: 1 (lower is better) Translates to: KLLGSMCQIGRNSSI*LDVPLFKHRLVLCG Trigger: GCCACATAATACTAACCTGTGTTTGAATAGTGGCACATCCAGTCATATTGAGCTATTCCTACCTATCTGACACATGCTCCCAAGGAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR GCA 90 bp | AATAAACTACTCTGCCATTTGGAAAGAATCTCAAAGCACAGCTGTTaGTTAGGATTTGAGATCTGGGAACCCATTACATTTCTGTCTCAC | + |
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Preference number: 1 (lower is better) Translates to: NKLLCHLERISKHSC*LGFEIWEPITFLSH Trigger: GTGAGACAGAAATGTAATGGGTTCCCAGATCTCAAATCCTAAGCAACAGCTGTGCTTTGAGATTCTTTCCAAATGGCAGAGTAGTTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 90 bp | ATACAAATACATAAACGATGTGACCAGAAGCCAAGAAACTGGAGATaGGCAAAGTTAAGACATGAAACTTGCTTATGTGTAAGCTATGCT | + |
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Preference number: 1 (lower is better) Translates to: IQIHKRCDQKPRNWR*AKLRHETCLCVSYA Trigger: AGCATAGCTTACACATAAGCAAGTTTCATGTCTTAACTTTGCCCATCTCCAGTTTCTTGGCTTCTGGTCACATCGTTTATGTATTTGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR GCA 90 bp | ACAATTCTCATTAAACAATTTCTCTCATATTCTTTAAGACAATCATaGAAAAGGGACTCCACCAAACATGAAGAAGGAGTCAGAGAGTTC | + |
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Preference number: 1 (lower is better) Translates to: TILIKQFLSYSLRQS*KRDSTKHEEGVREF Trigger: GAACTCTCTGACTCCTTCTTCATGTTTGGTGGAGTCCCTTTTGCATGATTGTCTTAAAGAATATGAGAGAAATTGTTTAATGAGAATTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | GGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAATAACTCCCACCGGTGCATTCTTCAAATGTaGAGGAGAGCTAGATGTGGC | + |
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Preference number: 2 (lower is better) Translates to: GKGATSSFFVITGNNSHRCILQM*RRARCG Trigger: GCCACATCTAGCTCTCCTTCACATTTGAAGAATGCA...CCGGTGGGAGTTATTTCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGACTCTGCTGTAACTGCTaGTGGAGGAAATGCGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: LKTTQGKGATSSFFVITGLCCNC*WRKCGK Trigger: TTTTCCGCATTTCCTCCATCAGCAGTTACAGCAGAG...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCAAAGGTGAATGAGAATTaGATTCTTCAGCGTTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LLWRRMDMENRAVACKWAKVNEN*ILQRFC Trigger: GCAGAAACGCTGAAGAATCCAATTCTCATTCACCTT...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR GCA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCATCTTTAAGACAATCATaGAAAAGGGACTCCACCAAA | + |
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Preference number: 2 (lower is better) Translates to: LLWRRMDMENRAVACKWASLRQS*KRDSTK Trigger: TTTGGTGGAGTCCCTTTTGCATGATTGTCTTAAAGA...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCATTAGGATTTGAGATCTaGGAACCCATTACATTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LLWRRMDMENRAVACKWALGFEI*EPITFL Trigger: CAGAAATGTAATGGGTTCCCAGATCTCAAATCCTAA...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 90 bp | TGGCTTCTCTATGCAAAGTTAAGCTGTGAAAATATGGAGAATAGATaGTGGAAGGCCACAAGAGATGAGGGTAACTATGTGTCTTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: WLLYAKLSCENMENR*WKATRDEGNYVSWK Trigger: CTTCCAAGACACATAGTTACCCTCATCTCTTGTGGCCTTCCACAATCTATTCTCCATATTTTCACAGCTTAACTTTGCATAGAGAAGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | GCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAAACATCCAAGGTGGCATCCAAGGAAAAGGTaGATGAGAATTGGATTCTTC | + |
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Preference number: 2 (lower is better) Translates to: AEASHCLMLWRRKKHPRWHPRKR*MRIGFF Trigger: GAAGAATCCAATTCTCATTCACCTTTTCCTTGGATG...CCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | AGAAACATCCAAGGTGGAGTATCCATTGCAGGCACTGACACAAAGTTTTATTTAAACCATTACCACTACTaGGACACACATCCAAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: RNIQGGVSIAGTDTKFYLNHYHY*DTHPRK Trigger: TTTCCTTGGATGTGTGTCTCAGTAGTGGTAATGGTT...TAAATAAAACTTTGTGTCAGTGCCTGCAATGGATACTCCACCTTGGATGTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | GCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAAACATCCAAGGTGGAACATTTCTAGAATTTaGAGAGCTGGGTTTGACTCA | + |
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Preference number: 2 (lower is better) Translates to: AEASHCLMLWRRKKHPRWNISRI*RAGFDS Trigger: TGAGTCAAACCCAGCTCTTCAAATTCTAGAAATGTT...CCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR TCA 90 bp | GCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAAACATCCAAGGTGGTGTCAAATCCAATTCTaGCTCTTTTGTGATTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: AEASHCLMLWRRKKHPRWCQIQF*LFCDSA Trigger: TGCTGAATCACAAAAGAGTCAGAATTGGATTTGACA...CCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAACATCCAAGGTGGAGTATCCATTGCAGGCACTGACACAAAGTTTTATTTAACATGCCATATTTTGTaGCTTCCCCACAGGCATATA | + |
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Preference number: 2 (lower is better) Translates to: RNIQGGVSIAGTDTKFYLTCHIL*LPHRHI Trigger: TATATGCCTGTGGGGAAGGCACAAAATATGGCATGT...TAAATAAAACTTTGTGTCAGTGCCTGCAATGGATACTCCACCTTGGATGTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGACCAAGAAACTGGAGATaGGCAAAGTTAAGACATGAA | + |
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Preference number: 2 (lower is better) Translates to: LKTTQGKGATSSFFVITGPRNWR*AKLRHE Trigger: TTCATGTCTTAACTTTGCCCATCTCCAGTTTCTTGG...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 90 bp | CCACTATTCAAACACAGGTTAGTATTATGTGGCAGAAGCATCCCATaGTTTGATGTTATGGAGAAGAAAGAAACATCCAAGGTGGAGTAT | + |
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Preference number: 2 (lower is better) Translates to: PLFKHRLVLCGRSIP*FDVMEKKETSKVEY Trigger: ATACTCCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAACCTGTGTTTGAATAGTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR GCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGACCAAATAAACTACTCTaGCATTTGGAAAGAATCTCA | + |
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Preference number: 2 (lower is better) Translates to: LKTTQGKGATSSFFVITGPNKLL*HLERIS Trigger: TGAGATTCTTTCCAAATGGCAGAGTAGTTTATTTGG...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGTATTATGTGGCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAACAGAAGCCAAGAAACTaGAGATGGGCAAAGTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: LVLCGRSIPLFDVMEKKEQKPRN*RWAKLR Trigger: TCTTAACTTTGCCCATCTCCAGTTTCTTGGCTTCTG...TTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR GCA 90 bp | TTAGTATTATGTGGCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAACTTATGTGTAAGCTATaGTTTTTGTACAGAGACAGA | + |
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Preference number: 2 (lower is better) Translates to: LVLCGRSIPLFDVMEKKELMCKL*FLYRDR Trigger: TCTGTCTCTGTACAAAAAGCATAGCTTACACATAAG...TTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | GGCCTTTCACAGCTTCCCAAGTGGGACACAGAAGCTTaGAGAACATGCCATATTTTGTGCCTTCCCCACAGG | + |
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Preference number: 3 (lower is better) Translates to: GLSQLPKWDTEA*RTCHILCLPHR Trigger: CCTGTGGGGAAGGCACAAAATATGGCATGTTCTTCAAGCTTCTGTGTCCCACTTGGGAAGCTGTGAAAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | CTGAGACACACATCCAAGGAAAAGGTGAATGAGAATTaGATTCTTCAGCGTTTCTGCCAGTGTAAGACTCCC | + |
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Preference number: 3 (lower is better) Translates to: LRHTSKEKVNEN*ILQRFCQCKTP Trigger: GGGAGTCTTACACTGGCAGAAACGCTGAAGAATCCAATTCTCATTCACCTTTTCCTTGGATGTGTGTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | GAACAGTCATGTGTCTTTTCCCTCTGCTGTAACTGCTaGTGGAGGAAATGCGGAAAAACCATTACCACTACT | + |
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Preference number: 3 (lower is better) Translates to: EQSCVFSLCCNC*WRKCGKTITTT Trigger: AGTAGTGGTAATGGTTTTTCCGCATTTCCTCCATCAGCAGTTACAGCAGAGGGAAAAGACACATGACTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | CATAGCGGTATCTTCTTTAGCTTAGGGTACCTTCTATaGAGAAGAATGGATATGGAGAATCGTGCTGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: HSGIFFSLGYLL*RRMDMENRAVA Trigger: AGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAGGTACCCTAAGCTAAAGAAGATACCGCTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CAA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCATACTTAGAGCTTGTTTaGAAGACCACACAGGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: LLWRRMDMENRAVACKWAYLELV*KTTQGK Trigger: TTTTCCCTGTGTGGTCTTCAAAACAAGCTCTAAGTA...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | GGGAGCATGTGTCAGATAGGTAGGAATAGCTCAATATaGCTGGATGTGCCACTATTCAAACACAGGTTAGTA | + |
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Preference number: 3 (lower is better) Translates to: GSMCQIGRNSSI*LDVPLFKHRLV Trigger: TACTAACCTGTGTTTGAATAGTGGCACATCCAGTCATATTGAGCTATTCCTACCTATCTGACACATGCTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | TTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTaGCTTGTAAGTGGGCAGAACTTAGTAAAGACCTAC | + |
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Preference number: 3 (lower is better) Translates to: FYGEEWIWRIVL*LVSGQNLVKTY Trigger: GTAGGTCTTTACTAAGTTCTGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | GCAGACTTGTCATGGTATCTGAATGATAGGCTATGGTaGGATCTTTTTAGGCTAACAGTGTTTCTAGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: ADLSWYLNDRLW*DLFRLTVFLGQ Trigger: CTGACCTAGAAACACTGTTAGCCTAAAAAGATCTCACCATAGCCTATCATTCAGATACCATGACAAGTCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR GCA 72 bp | CTCTGCCATTTGGAAAGAATCTCAAAGCACAGCTGTTaGTTAGGATTTGAGATCTGGGAACCCATTACATTT | + |
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Preference number: 3 (lower is better) Translates to: LCHLERISKHSC*LGFEIWEPITF Trigger: AAATGTAATGGGTTCCCAGATCTCAAATCCTAAGCAACAGCTGTGCTTTGAGATTCTTTCCAAATGGCAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CAA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAAACTACTCTGCCATTaGGAAAGAATCTCAAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: LKTTQGKGATSSFFVITGKLLCH*ERISKH Trigger: GTGCTTTGAGATTCTTTCCAAATGGCAGAGTAGTTT...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | CAGGTTAGTATTATGTGGCAGAAGCATCCCATTGTTTaGTGTTATGGAGAAGAAAGAAACATCCAAGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: QVSIMWQKHPIV*CYGEERNIQGG Trigger: TCCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAACCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | GCAAAGTTAAGCTGTGAAAATATGGAGAATAGATTGTaGAAGGCCACAAGAGATGAGGGTAACTATGTGTCT | + |
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Preference number: 3 (lower is better) Translates to: AKLSCENMENRL*KATRDEGNYVS Trigger: AGACACATAGTTACCCTCATCTCTTGTGGCCTTCCACAATCTATTCTCCATATTTTCACAGCTTAACTTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | ATCTCAAAGCACAGCTGTTGCTTAGGATTTGAGATCTaGGAACCCATTACATTTCTGTCTCACCATTCTTTT | + |
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Preference number: 3 (lower is better) Translates to: ISKHSCCLGFEI*EPITFLSHHSF Trigger: AAAAGAATGGTGAGACAGAAATGTAATGGGTTCCCAGATCTCAAATCCTAAGCAACAGCTGTGCTTTGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | GAAGCCAAGAAACTGGAGATGGGCAAAGTTAAGACATaGAACTTGCTTATGTGTAAGCTATGCTTTTTGTAC | + |
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Preference number: 3 (lower is better) Translates to: EAKKLEMGKVKT*NLLMCKLCFLY Trigger: GTACAAAAAGCATAGCTTACACATAAGCAAGTTTCATGTCTTAACTTTGCCCATCTCCAGTTTCTTGGCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CCA 72 bp | CAAATACATAAACGATGTGACCAGAAGCCAAGAAACTaGAGATGGGCAAAGTTAAGACATGAAACTTGCTTA | + |
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Preference number: 3 (lower is better) Translates to: QIHKRCDQKPRN*RWAKLRHETCL Trigger: TAAGCAAGTTTCATGTCTTAACTTTGCCCATCTCCAGTTTCTTGGCTTCTGGTCACATCGTTTATGTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR TCA 72 bp | AGAGCTGGGTTTGACTCAAGTCCCCACAACTATTATTaGATATCTTGGCTTGCTTCTTACATTCAACTAAAT | + |
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Preference number: 3 (lower is better) Translates to: RAGFDSSPHNYY*ISWLASYIQLN Trigger: ATTTAGTTGAATGTAAGAAGCAAGCCAAGATATTCAATAATAGTTGTGGGGACTTGAGTCAAACCCAGCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR-3UTR CAA 90 bp | TTAGTATTATGTGGCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAATGTAAGCTATGCTTTTaGTACAGAGACAGACTTAGG | + |
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Preference number: 3 (lower is better) Translates to: LVLCGRSIPLFDVMEKKECKLCF*YRDRLR Trigger: CCTAAGTCTGTCTCTGTACAAAAAGCATAGCTTACA...TTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR GCA 72 bp | TGTGTTTGTGGTGCATCTTATAACTTTCCAGCTAATTaGATATTAATGTCACGACTAGTTTTCCAAATGATG | + |
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Preference number: 3 (lower is better) Translates to: CVCGASYNFPAN*ILMSRLVFQMM Trigger: CATCATTTGGAAAACTAGTCGTGACATTAATATGCAATTAGCTGGAAAGTTATAAGATGCACCACAAACACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 72 bp | AGGCCTTTCACAGCTTCCCAAGTGGGACACAGAAGCTaGAAGAACATGCCATATTTTGTGCCTTCCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: RPFTASQVGHRS*KNMPYFVPSPQ Trigger: CTGTGGGGAAGGCACAAAATATGGCATGTTCTTCAAGCTTCTGTGTCCCACTTGGGAAGCTGTGAAAGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | AAAGGGACTCCACCAAACATGAAGAAGGAGTCAGAGAGTTCAGAGATGAACAGAACTGGCAAGGATTCCTaGTCTTGGGGAGGTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KGTPPNMKKESESSEMNRTGKDS*SWGGAG Trigger: TCCAGCACCTCCCCAAGAGCAGGAATCCTTGCCAGT...TCTGTTCATCTCTGAACTCTCTGACTCCTTCTTCATGTTTGGTGGAGTCCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCAATACACTCAAACAGATaGGTGCGAAGACCCCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LLWRRMDMENRAVACKWAIHSNR*VRRPLW Trigger: CCACAGGGGTCTTCGCACCCATCTGTTTGAGTGTAT...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR TCA 90 bp | GGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAATAACTCCCACCGGGGAAGAGGCCATTCATaGTTTGGACAGCCCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: GKGATSSFFVITGNNSHRGRGHS*FGQPPK Trigger: CTTTGGGGGCTGTCCAAATCATGAATGGCCTCTTCC...CCGGTGGGAGTTATTTCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR TCA 90 bp | AACATGAAGAAGGAGTCAGAGAGTTCAGAGATGAACAGAACAGTCATGTGTCTTTGTGGGGCCCACCAGTaGAGATGTCCTTTTGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: NMKKESESSEMNRTVMCLCGAHQ*RCPFEV Trigger: AACCTCAAAAGGACATCTTCACTGGTGGGCCCCACA...AAGACACATGACTGTTCTGTTCATCTCTGAACTCTCTGACTCCTTCTTCATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR TCA 90 bp | GCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAAACATCCAAGGTGGCCTTTGATTCCCTCATaGAGAAGCTTTGTGTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: AEASHCLMLWRRKKHPRWPLIPS*RSFVWG Trigger: GCCCCACACAAAGCTTCTTCATGAGGGAATCAAAGG...CCACCTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAACTCAAACAGATGGGTaGGAAGACCCCTGTGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: LKTTQGKGATSSFFVITGTQTDG*EDPCGD Trigger: ATCCCCACAGGGGTCTTCGCACCCATCTGTTTGAGT...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR TCA 90 bp | TTTGAAGAGCTGGGTTTGACTCAAGTCCCCACAACTATTATTGAATATCTTGGCAGCCCCCAAAGCCTTTaGTTCCCTCATGAAGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: FEELGLTQVPTTIIEYLGSPQSL*FPHEEA Trigger: AGCTTCTTCATGAGGGAATCAAAGGCTTTGGGGGCT...GCCAAGATATTCAATAATAGTTGTGGGGACTTGAGTCAAACCCAGCTCTTCAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | AACATGAAGAAGGAGTCAGAGAGTTCAGAGATGAACAGAACAGTCATGTGTCTTGCATCGCCGACAGAATaGCCAAGAACACAGACTGAA | + |
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Preference number: 4 (lower is better) Translates to: NMKKESESSEMNRTVMCLASPTE*PRTQTE Trigger: TTCAGTCTGTGTTCTTGGGCATTCTGTCGGCGATGC...AAGACACATGACTGTTCTGTTCATCTCTGAACTCTCTGACTCCTTCTTCATGTT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | TACAAATACATAAACGATGTGACCAGAAGCCAAGAAACTGGAGATGGGCAAAGTACCTTTTGTAGGCTCTaGTGGGAAAGGTCCACTCAT | + |
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Preference number: 4 (lower is better) Translates to: YKYINDVTRSQETGDGQSTFCRL*WERSTH Trigger: ATGAGTGGACCTTTCCCAGCAGAGCCTACAAAAGGT...ACTTTGCCCATCTCCAGTTTCTTGGCTTCTGGTCACATCGTTTATGTATTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | GGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAATAACTCCCACCGGCTGCTCTTGGGGAGGTaGTGGAAAATTTATTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GKGATSSFFVITGNNSHRLLLGR*WKIYFC Trigger: GCAGAAATAAATTTTCCAGCACCTCCCCAAGAGCAG...CCGGTGGGAGTTATTTCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | TACAAATACATAAACGATGTGACCAGAAGCCAAGAAACTGGAGATGGGCAAAGTAGGCCATTCATGATTTaGACAGCCCCCAAAGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: YKYINDVTRSQETGDGQSRPFMI*TAPKAF Trigger: AAAGGCTTTGGGGGCTGTCCAAATCATGAATGGCCT...ACTTTGCCCATCTCCAGTTTCTTGGCTTCTGGTCACATCGTTTATGTATTTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAGCTGTCACAAGTTTCTaGAAGAAGGCAGAGATCAGC | + |
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Preference number: 4 (lower is better) Translates to: LKTTQGKGATSSFFVITGAVTSF*KKAEIS Trigger: GCTGATCTCTGCCTTCTTCCAGAAACTTGTGACAGC...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR TCA 90 bp | AGAAACATCCAAGGTGGAGTATCCATTGCAGGCACTGACACAAAGTTTTATTTAGTGAAGATGTCCTTTTaGGGTTCACTTTTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RNIQGGVSIAGTDTKFYLVKMSF*GSLLEQ Trigger: CTGCTCCAAAAGTGAACCTCAAAAGGACATCTTCAC...TAAATAAAACTTTGTGTCAGTGCCTGCAATGGATACTCCACCTTGGATGTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | AGAAACATCCAAGGTGGAGTATCCATTGCAGGCACTGACACAAAGTTTTATTTAGATCTCATTTTCCACTaGCAAGGATTCCTGCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RNIQGGVSIAGTDTKFYLDLIFH*QGFLLL Trigger: CAAGAGCAGGAATCCTTGCCAGTGGAAAATGAGATC...TAAATAAAACTTTGTGTCAGTGCCTGCAATGGATACTCCACCTTGGATGTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAGAATTATTCCAGAAATaGCAGCAAAGAGGCTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LKTTQGKGATSSFFVITGELFQK*QQRGLE Trigger: CTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTC...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | GGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAATAACTCCCACCGGTTCTTCCTCCTGCACTaGAATAATTTCAATTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GKGATSSFFVITGNNSHRFFLLH*NNFNFL Trigger: GAGGAAATTGAAATTATTCCAGTGCAGGAGGAAGAA...CCGGTGGGAGTTATTTCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | AGAAACATCCAAGGTGGAGTATCCATTGCAGGCACTGACACAAAGTTTTATTTACTCTTGGGGAGGTGCTaGAAAATTTATTTCTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RNIQGGVSIAGTDTKFYLLLGRC*KIYFCF Trigger: GAAGCAGAAATAAATTTTCCAGCACCTCCCCAAGAG...TAAATAAAACTTTGTGTCAGTGCCTGCAATGGATACTCCACCTTGGATGTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 72 bp | TATGCAAAGTTAAGCTGTGAAAATATGGAGAATAGATaGTGGAAGGCCACAAGAGATGAGGGTAACTATGTG | + |
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Preference number: 4 (lower is better) Translates to: YAKLSCENMENR*WKATRDEGNYV Trigger: CACATAGTTACCCTCATCTCTTGTGGCCTTCCACAATCTATTCTCCATATTTTCACAGCTTAACTTTGCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 72 bp | GTGAATCATGAAAGACCAAATAAACTACTCTGCCATTaGGAAAGAATCTCAAAGCACAGCTGTTGCTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: VNHERPNKLLCH*ERISKHSCCLG Trigger: TCCTAAGCAACAGCTGTGCTTTGAGATTCTTTCCAAATGGCAGAGTAGTTTATTTGGTCTTTCATGATTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR GCA 90 bp | TTTGAAGAGCTGGGTTTGACTCAAGTCCCCACAACTATTATTGAATATCTTGGCTCTTCTTCTTCCTCCTaGACTGGAATAATTTCAATT | + |
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Preference number: 4 (lower is better) Translates to: FEELGLTQVPTTIIEYLGSSSSS*TGIISI Trigger: AATTGAAATTATTCCAGTGCAGGAGGAAGAAGAAGA...GCCAAGATATTCAATAATAGTTGTGGGGACTTGAGTCAAACCCAGCTCTTCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| 3UTR CAA 72 bp | AAACACAGGTTAGTATTATGTGGCAGAAGCATCCCATaGTTTGATGTTATGGAGAAGAAAGAAACATCCAAG | + |
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Preference number: 4 (lower is better) Translates to: KHRLVLCGRSIP*FDVMEKKETSK Trigger: CTTGGATGTTTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAACCTGTGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CCA 90 bp | TTAGTATTATGTGGCAGAAGCATCCCATTGTTTGATGTTATGGAGAAGAAAGAATCTTCATTCTTTGGTTaGGAAGATACTCCACTTAGC | + |
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Preference number: 4 (lower is better) Translates to: LVLCGRSIPLFDVMEKKESSFFG*EDTPLS Trigger: GCTAAGTGGAGTATCTTCCCAACCAAAGAATGAAGA...TTCTTTCTTCTCCATAACATCAAACAATGGGATGCTTCTGCCACATAATACTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CAA 90 bp | TTGAAGACCACACAGGGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGACAAGGATTCCTGCTCTaGGGGAGGTGCTGGAAAATT | + |
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Preference number: 5 (lower is better) Translates to: LKTTQGKGATSSFFVITGQGFLL*GRCWKI Trigger: AATTTTCCAGCACCTCCCCAAGAGCAGGAATCCTTG...TCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCCCTGTGTGGTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CAA 90 bp | CTTCTATGGAGAAGAATGGATATGGAGAATCGTGCTGTGGCTTGTAAGTGGGCAATTATCACTTTTGCTTaGACCAAACTCTTCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LLWRRMDMENRAVACKWAIITFA*TKLFLE Trigger: CTCCAGGAAGAGTTTGGTCAAAGCAAAAGTGATAAT...TGCCCACTTACAAGCCACAGCACGATTCTCCATATCCATTCTTCTCCATAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS-3UTR CAA 90 bp | GGAAAAGGTGCTACTTCCAGTTTCTTTGTAATAACAGGAAATAACTCCCACCGGTTTCCTCTTCATTCTTaGGTTGGGAAGATACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GKGATSSFFVITGNNSHRFPLHS*VGKILH Trigger: GTGGAGTATCTTCCCAACCAAAGAATGAAGAGGAAA...CCGGTGGGAGTTATTTCCTGTTATTACAAAGAAACTGGAAGTAGCACCTTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS TCA 90 bp | AGACTGAATGCTGTTACAGTACTGTGTAGATGGGGAGTTTTTCTCTaGGGAATTAGATGGTTCACAGTCGTAGATATCAACATACGGCTT | + |
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Preference number: 5 (lower is better) Translates to: RLNAVTVLCRWGVFL*GIRWFTVVDINIRL Trigger: AAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS TCA 72 bp | GAGGCCATTCATGATTTGGACAGCCCCCAAAGCCTTTaGTTCCCTCATGAAGAAGCTTTGTGTGGGGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: EAIHDLDSPQSL*FPHEEALCGAH Trigger: GTGGGCCCCACACAAAGCTTCTTCATGAGGGAATCAAAGGCTTTGGGGGCTGTCCAAATCATGAATGGCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS CAA 72 bp | AAGCTTTGTGTGGGGCCCACCAGTGAAGATGTCCTTTaGAGGTTCACTTTTGGAGCAGGTTGCATGGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: KLCVGPTSEDVL*RFTFGAGCMAR Trigger: CCTCGCCATGCAACCTGCTCCAAAAGTGAACCTCAAAAGGACATCTTCACTGGTGGGCCCCACACAAAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS GCA 72 bp | TCTGGAAGAAGGCAGAGATCAGCATCGCCGACAGAATaGCCAAGAACACAGACTGAATGCTGTTACAGTACT | + |
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Preference number: 6 (lower is better) Translates to: SGRRQRSASPTE*PRTQTECCYST Trigger: AGTACTGTAACAGCATTCAGTCTGTGTTCTTGGGCATTCTGTCGGCGATGCTGATCTCTGCCTTCTTCCAGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS TCA 72 bp | ATCAGCATCGCCGACAGAATGCCCAAGAACACAGACTaGATGCTGTTACAGTACTGTGTAGATGGGGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: ISIADRMPKNTD*MLLQYCVDGEF Trigger: AAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTGGGCATTCTGTCGGCGATGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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| CDS CCA 72 bp | GCGATCTCATTTTCCACTGGCAAGGATTCCTGCTCTTaGGGAGGTGCTGGAAAATTTATTTCTGCTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: AISFSTGKDSCS*GGAGKFISASS Trigger: AGAAGAAGCAGAAATAAATTTTCCAGCACCTCCCCAAGAGCAGGAATCCTTGCCAGTGGAAAATGAGATCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169159.3 |
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