Pregenerated sensors for MRTO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028741Ensembl transcript IDs: ENSMUST00000030513.13, ENSMUST00000102503.10
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTCTCCTGCTGTCTCCCGGGAACACCCCGCGGACACAATTTTATTCTTTATAGAGGTGTCCAGCAAAGATaGAGAACTCGCTGGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: VSCCLPGTPRGHNFILYRGVQQR*RTRWKA Trigger: GGCCTTCCAGCGAGTTCTTCATCTTTGCTGGACACC...TCTATAAAGAATAAAATTGTGTCCGCGGGGTGTTCCCGGGAGACAGCAGGAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102503.10 |
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| 3UTR-3UTR TCA 90 bp | TGCTGTCTCCCGGGAACACCCCGCGGACACAATTTTATTCTTTATAGAAACAAAGGTGTCCAGCAAAGATaGAGAACTCGCTGGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: CCLPGTPRGHNFILYRNKGVQQR*RTRWKA Trigger: GGCCTTCCAGCGAGTTCTTCATCTTTGCTGGACACC...TTTGTTTCTATAAAGAATAAAATTGTGTCCGCGGGGTGTTCCCGGGAGACAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CCA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGGATACGGGCCTGCTCTaGGGTCAGCACATCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGDTGLL*GQHITL Trigger: GAGGGTGATGTGCTGACCCCAGAGCAGGCCCGTATC...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CCA 90 bp | GGGGTGGGGTGTCCAGCAAAGATGAAGAACTCGCTGGAAGGCCATAGTCCTGGCGATACGGGCCTGCTCTaGGGTCAGCACATCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: GVGCPAKMKNSLEGHSPGDTGLL*GQHITL Trigger: GAGGGTGATGTGCTGACCCCAGAGCAGGCCCGTATC...GCCAGGACTATGGCCTTCCAGCGAGTTCTTCATCTTTGCTGGACACCCCACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CCA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGTGGAATCGTCCCGACTaGGCGTCCCACATGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGWNRPD*ASHMYL Trigger: CAAATACATGTGGGACGCCCAGTCGGGACGATTCCA...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR TCA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGTTTCTGTATACTTGGTaGACCACTCATTCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGFLYTW*TTHSPP Trigger: AGGAGGTGAATGAGTGGTTCACCAAGTATACAGAAA...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR TCA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGAACTTCTTGCTGACCTaGTGTAGGTTGTCTTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGNFLLT*CRLSLY Trigger: ATACAAAGACAACCTACATCAGGTCAGCAAGAAGTT...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR GCA 90 bp | GGGGTGGGGTGTCCAGCAAAGATGAAGAACTCGCTGGAAGGCCATAGTCCTGGCGCACATCACCCTCTTTaGATACTTCATAGTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: GVGCPAKMKNSLEGHSPGAHHPL*ILHSQT Trigger: TGTCTGACTATGAAGTATGCAAAGAGGGTGATGTGC...GCCAGGACTATGGCCTTCCAGCGAGTTCTTCATCTTTGCTGGACACCCCACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR GCA 90 bp | AAACAAAATCATTCCCTAGCACCCTCCCTTGTCTTTGTCCATAGCAAAATAAATAGCAGGATACGGGCCTaGTCTGGGGTCAGCACATCA | + |
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Preference number: 4 (lower is better) Translates to: KQNHSLAPSLVFVHSKINSRIRA*SGVSTS Trigger: TGATGTGCTGACCCCAGAGCAGGCCCGTATCCTGCT...ATTTATTTTGCTATGGACAAAGACAAGGGAGGGTGCTAGGGAATGATTTTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030513.13 |
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| CDS-3UTR GCA 90 bp | AAACAAAATCATTCCCTAGCACCCTCCCTTGTCTTTGTCCATAGCAAAATAAATTTCAGGATACGGGCCTaGTCTGGGGTCAGCACATCA | + |
|
Preference number: 4 (lower is better) Translates to: KQNHSLAPSLVFVHSKINFRIRA*SGVSTS Trigger: TGATGTGCTGACCCCAGAGCAGGCCCGTATCCTGAA...ATTTATTTTGCTATGGACAAAGACAAGGGAGGGTGCTAGGGAATGATTTTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102503.10 |
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| CDS-3UTR GCA 90 bp | TGCTGTCTCCCGGGAACACCCCGCGGACACAATTTTATTCTTTATAGAAACAAAGCACATCACCCTCTTTaGATACTTCATAGTCAGACA | + |
|
Preference number: 4 (lower is better) Translates to: CCLPGTPRGHNFILYRNKAHHPL*ILHSQT Trigger: TGTCTGACTATGAAGTATGCAAAGAGGGTGATGTGC...TTTGTTTCTATAAAGAATAAAATTGTGTCCGCGGGGTGTTCCCGGGAGACAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR TCA 90 bp | AAACAAAATCATTCCCTAGCACCCTCCCTTGTCTTTGTCCATAGCAAAATAAATAACTTCTTGCTGACCTaGTGTAGGTTGTCTTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: KQNHSLAPSLVFVHSKINNFLLT*CRLSLY Trigger: ATACAAAGACAACCTACATCAGGTCAGCAAGAAGTT...ATTTATTTTGCTATGGACAAAGACAAGGGAGGGTGCTAGGGAATGATTTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CAA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGGTCACCACACCTTTCTaGAGGGCAGTGGGCAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGVTTPF*RAVGSP Trigger: GGGGCTGCCCACTGCCCTCAAGAAAGGTGTGGTGAC...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CAA 90 bp | ATAGCTGTTCCCTCTAGAGTGGTGACAGCAGTCCGGGGGCAGGGTGAGGTGGGGGTTAAAGAAACTTTCTaGTCTCGCTTGGATTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: IAVPSRVVTAVRGQGEVGVKETF*SRLDLG Trigger: GCCCAAATCCAAGCGAGACAAGAAAGTTTCTTTAAC...CCCCACCTCACCCTGCCCCCGGACTGCTGTCACCACTCTAGAGGGAACAGCTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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| CDS-3UTR CAA 90 bp | TGCTGTCTCCCGGGAACACCCCGCGGACACAATTTTATTCTTTATAGAAACAAAGTCACCACACCTTTCTaGAGGGCAGTGGGCAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: CCLPGTPRGHNFILYRNKVTTPF*RAVGSP Trigger: GGGGCTGCCCACTGCCCTCAAGAAAGGTGTGGTGAC...TTTGTTTCTATAAAGAATAAAATTGTGTCCGCGGGGTGTTCCCGGGAGACAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030513.13 ENSMUST00000102503.10 |
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