Pregenerated sensors for MRRF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026887Ensembl transcript IDs: ENSMUST00000028250.9, ENSMUST00000132042.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAACAAGGAAGAGATTCCATAAATCTGAGCATCCCAACAGGAGACTaGGCAGACGATGGAGGCGCAGCAGTATCAGCCTCGGGTGCATGG | + |
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Preference number: 1 (lower is better) Translates to: EQGRDSINLSIPTGD*ADDGGAAVSASGAW Trigger: CCATGCACCCGAGGCTGATACTGCTGCGCCTCCATCGTCTGCTCAGTCTCCTGTTGGGATGCTCAGATTTATGGAATCTCTTCCTTGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 90 bp | TGTGGTGACACCACAGTCAAGGTCACTGCCAGAGTAAAGGTCCTCTaGCAACAGAGACATTCACAAGGGGAGATTCAGAGCAGAACAAGC | + |
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Preference number: 1 (lower is better) Translates to: CGDTTVKVTARVKVL*QQRHSQGEIQSRTS Trigger: GCTTGTTCTGCTCTGAATCTCCCCTTGTGAATGTCTCTGTTGGCAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTGGTGTCACCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 90 bp | GGCCCACATGAACAGCATGTGGGAGGACAACCCAGAGGCAAAAACTaGCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCA | + |
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Preference number: 1 (lower is better) Translates to: GPHEQHVGGQPRGKN*PWLLYKQVLGFFHP Trigger: TGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCACATGCTGTTCATGTGGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 90 bp | CAACAGAGACATTCACAAGGGGAGATTCAGAGCAGAACAAGCCTGTaGACGGGAACAAGGAAGAGATTCCATAAATCTGAGCATCCCAAC | + |
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Preference number: 1 (lower is better) Translates to: QQRHSQGEIQSRTSL*TGTRKRFHKSEHPN Trigger: GTTGGGATGCTCAGATTTATGGAATCTCTTCCTTGTTCCCGTGCACAGGCTTGTTCTGCTCTGAATCTCCCCTTGTGAATGTCTCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CCA 90 bp | CATGAACAGCATGTGGGAGGACAACCCAGAGGCAAAAACTGCCCTTaGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAAACCAC | + |
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Preference number: 1 (lower is better) Translates to: HEQHVGGQPRGKNCP*LLYKQVLGFFHPNH Trigger: GTGGTTTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCACATGCTGTTCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR-3UTR TCA 90 bp | GCAGTCAGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTTGCCACCCACGGCATaGGCAGACACAGGACTCGGT | + |
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Preference number: 2 (lower is better) Translates to: AVRLKAHINPNEFNTRAGLPPTA*ADTGLG Trigger: ACCGAGTCCTGTGTCTGCTCATGCCGTGGGTGGCAA...CCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCTGACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR-3UTR TCA 90 bp | AGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATGCCCTAGTGCTGTGGTaGCACCACAGTCAAGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: RLKAHINPNEFNTRAGYDALVLW*HHSQGH Trigger: GTGACCTTGACTGTGGTGTCACCACAGCACTAGGGC...ATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CAA 90 bp | GAACAGCATGTGGGAGGACAACCCAGAGGCAAAAACTGCCCTTGGTaGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAAACCACTCT | + |
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Preference number: 2 (lower is better) Translates to: EQHVGGQPRGKNCPW*LYKQVLGFFHPNHS Trigger: AGAGTGGTTTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCACATGCTGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR-3UTR CCA 90 bp | GGACAACTTCAAGCGGTACTCTGTGTCATTCTCTCTGGTAATTTTTCTCAAGATTCAGCCTCGGGTGCATaGTCAGGGCAGTGTAGACAC | + |
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Preference number: 2 (lower is better) Translates to: GQLQAVLCVILSGNFSQDSASGA*SGQCRH Trigger: GTGTCTACACTGCCCTGACCATGCACCCGAGGCTGA...ATCTTGAGAAAAATTACCAGAGAGAATGACACAGAGTACCGCTTGAAGTTGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR-3UTR CCA 90 bp | AGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATTCACAGTAGACTGAGCAGACGATaGAGGCGCAGCAGTATCAGC | + |
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Preference number: 2 (lower is better) Translates to: RPTLIQMSLTQGQGMIHSRLSRR*RRSSIS Trigger: GCTGATACTGCTGCGCCTCCATCGTCTGCTCAGTCT...ACTGTGAATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR-3UTR GCA 90 bp | AGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATCACAGTCAAGGTCACTaGCAGAGTAAAGGTCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RLKAHINPNEFNTRAGYDHSQGH*QSKGPL Trigger: CAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTG...ATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CCA 72 bp | GACGATGGAGGCGCAGCAGTATCAGCCTCGGGTGCATaGTCAGGGCAGTGTAGACACGAGCTTGCCACCCAC | + |
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Preference number: 3 (lower is better) Translates to: DDGGAAVSASGA*SGQCRHELATH Trigger: GTGGGTGGCAAGCTCGTGTCTACACTGCCCTGACCATGCACCCGAGGCTGATACTGCTGCGCCTCCATCGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR TCA 72 bp | GAGCTGCTAAGCCTGACAGCGGCCCTAGTGCTGTGGTaGCACCACAGTCAAGGTCACTGCCAGAGTAAAGGT | + |
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Preference number: 3 (lower is better) Translates to: ELLSLTAALVLW*HHSQGHCQSKG Trigger: ACCTTTACTCTGGCAGTGACCTTGACTGTGGTGTCACCACAGCACTAGGGCCGCTGTCAGGCTTAGCAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CCA 72 bp | AAATCTGAGCATCCCAACAGGAGACTGAGCAGACGATaGAGGCGCAGCAGTATCAGCCTCGGGTGCATGGTC | + |
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Preference number: 3 (lower is better) Translates to: KSEHPNRRLSRR*RRSSISLGCMV Trigger: GACCATGCACCCGAGGCTGATACTGCTGCGCCTCCATCGTCTGCTCAGTCTCCTGTTGGGATGCTCAGATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR TCA 72 bp | AGAGATTCCATAAATCTGAGCATCCCAACAGGAGACTaGGCAGACGATGGAGGCGCAGCAGTATCAGCCTCG | + |
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Preference number: 3 (lower is better) Translates to: RDSINLSIPTGD*ADDGGAAVSAS Trigger: CGAGGCTGATACTGCTGCGCCTCCATCGTCTGCTCAGTCTCCTGTTGGGATGCTCAGATTTATGGAATCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR TCA 72 bp | ACCCCACATGGTGCAAGAGCTGGGCGAGGTCTGACCTaGCATCTATACAAAAGCTATGGCATGGCACACAAC | + |
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Preference number: 3 (lower is better) Translates to: TPHGARAGRGLT*HLYKSYGMAHN Trigger: GTTGTGTGCCATGCCATAGCTTTTGTATAGATGTCAGGTCAGACCTCGCCCAGCTCTTGCACCATGTGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 72 bp | ACCACAGTCAAGGTCACTGCCAGAGTAAAGGTCCTCTaGCAACAGAGACATTCACAAGGGGAGATTCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: TTVKVTARVKVL*QQRHSQGEIQS Trigger: GCTCTGAATCTCCCCTTGTGAATGTCTCTGTTGGCAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 72 bp | GAACAGCATGTGGGAGGACAACCCAGAGGCAAAAACTaGCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: EQHVGGQPRGKN*PWLLYKQVLGF Trigger: GAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCACATGCTGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR GCA 72 bp | CATTCACAAGGGGAGATTCAGAGCAGAACAAGCCTGTaGACGGGAACAAGGAAGAGATTCCATAAATCTGAG | + |
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Preference number: 3 (lower is better) Translates to: HSQGEIQSRTSL*TGTRKRFHKSE Trigger: CTCAGATTTATGGAATCTCTTCCTTGTTCCCGTGCACAGGCTTGTTCTGCTCTGAATCTCCCCTTGTGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CCA 72 bp | CATGTGGGAGGACAACCCAGAGGCAAAAACTGCCCTTaGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: HVGGQPRGKNCP*LLYKQVLGFFH Trigger: ATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCACATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CCA 72 bp | GCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTaGGGTTCTTCCATCCAAACCACTCTATCTTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: AKTALGCFINKF*GSSIQTTLSFF Trigger: GAAGAAAGATAGAGTGGTTTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR TCA 72 bp | TCCAATTTATTTAGGCTTGATCATCAGCAGTCAGACTaGAGGCCCACATTAATCCAAATGAGTTTAACACAA | + |
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Preference number: 3 (lower is better) Translates to: SNLFRLDHQQSD*RPTLIQMSLTQ Trigger: TTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCTGACTGCTGATGATCAAGCCTAAATAAATTGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | CAGTGTAGACACGAGCTTGCCACCCACGGCATGAGCAGACACAGGACTCGGTGTACGGTCACCCTGGCCTaGGGCTGTCCTTTCCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: QCRHELATHGMSRHRTRCTVTLA*GCPFPL Trigger: TAAAGGGAAAGGACAGCCCCAGGCCAGGGTGACCGT...ACACCGAGTCCTGTGTCTGCTCATGCCGTGGGTGGCAAGCTCGTGTCTACACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | CAGTGTAGACACGAGCTTGCCACCCACGGCATGAGCAGACACAGGACTCGGTGTGCCATTTGGCTGATCTaGTTCTCGATGAGTCTAATG | + |
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Preference number: 4 (lower is better) Translates to: QCRHELATHGMSRHRTRCAIWLI*FSMSLM Trigger: CATTAGACTCATCGAGAAGCAGATCAGCCAAATGGC...ACACCGAGTCCTGTGTCTGCTCATGCCGTGGGTGGCAAGCTCGTGTCTACACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | TGTGGTGACACCACAGTCAAGGTCACTGCCAGAGTAAAGGTCCTCTGCCAACAGCACCAGAATCACCTGTaGCGACTTCATGGAGATCTG | + |
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Preference number: 4 (lower is better) Translates to: CGDTTVKVTARVKVLCQQHQNHL*RLHGDL Trigger: CAGATCTCCATGAAGTCGCCACAGGTGATTCTGGTG...CTGTTGGCAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTGGTGTCACCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CAA 72 bp | GTGGGAGGACAACCCAGAGGCAAAAACTGCCCTTGGTaGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: VGGQPRGKNCPW*LYKQVLGFFHP Trigger: TGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCTGGGTTGTCCTCCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | GGACAACTTCAAGCGGTACTCTGTGTCATTCTCTCTGGTAATTTTTCTCAAGATGTCTTTGCTGCCAGATaGTGGTCCAGCTCTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: GQLQAVLCVILSGNFSQDVFAAR*WSSSAT Trigger: GGTGGCAGAGCTGGACCAGCATCTGGCAGCAAAGAC...ATCTTGAGAAAAATTACCAGAGAGAATGACACAGAGTACCGCTTGAAGTTGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | CACAGTCAAGGTCACTGCCAGAGTAAAGGTCCTCTGCCAACAGAGACATTCACATTTGGCTTTCTTGGTTaGAAAATGGCGAACTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HSQGHCQSKGPLPTETFTFGFLG*KMANWY Trigger: GTACCAGTTCGCCATTTTGCAACCAAGAAAGCCAAA...TGTGAATGTCTCTGTTGGCAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CAA 72 bp | ATGAGTTTAACACAAGGGCAGGGTATGATTCACAGTTaGAAAGGAGGCTCCTGTGTTGATGAGAGGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: MSLTQGQGMIHS*KGGSCVDERSC Trigger: GCAGCTCCTCTCATCAACACAGGAGCCTCCTTTCAAACTGTGAATCATACCCTGCCCTTGTGTTAAACTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | AGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATTCACAGTTTCTTTGGTCTTTGCTaGCAGATGCTGGTCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RPTLIQMSLTQGQGMIHSFFGLC*QMLVQL Trigger: GAGCTGGACCAGCATCTGGCAGCAAAGACCAAAGAA...ACTGTGAATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | GCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAACCTGTGGCGACTTCATaGAGATCTGGCCAATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: AKTALGCFINKFWGSSIQPVATS*RSGQSD Trigger: ATCAGATTGGCCAGATCTCCATGAAGTCGCCACAGG...TTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | AGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATTGCAGCTGTACACTCTaGGAAGCTGGCCATATTCAC | + |
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Preference number: 4 (lower is better) Translates to: RLKAHINPNEFNTRAGYDCSCTL*EAGHIH Trigger: GTGAATATGGCCAGCTTCCCAGAGTGTACAGCTGCA...ATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | GCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAAGTGTCGTCTGCCATTTaGCTGATCTGCTTCTCGATG | + |
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Preference number: 4 (lower is better) Translates to: AKTALGCFINKFWGSSIQVSSAI*LICFSM Trigger: CATCGAGAAGCAGATCAGCCAAATGGCAGACGACAC...TTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | AGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGTATGATCTTCTGAAACAGGTCTaGTCAAAGCAGCATGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: RLKAHINPNEFNTRAGYDLLKQV*SKQHGN Trigger: GTTACCATGCTGCTTTGACCAGACCTGTTTCAGAAG...ATCATACCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CCA 90 bp | GCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAAATGATCAAGGGATCCTaGTGCAGTCCTTATGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: AKTALGCFINKFWGSSIQMIKGS*CSPYVE Trigger: CTCAACATAAGGACTGCACCAGGATCCCTTGATCAT...TTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR TCA 90 bp | GGACAACTTCAAGCGGTACTCTGTGTCATTCTCTCTGGTAATTTTTCTCAAGATCTTCATGGAAACTTCTaGAACAGGTCTGGTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: GQLQAVLCVILSGNFSQDLHGNF*NRSGQS Trigger: GCTTTGACCAGACCTGTTTCAGAAGTTTCCATGAAG...ATCTTGAGAAAAATTACCAGAGAGAATGACACAGAGTACCGCTTGAAGTTGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | GGACAACTTCAAGCGGTACTCTGTGTCATTCTCTCTGGTAATTTTTCTCAAGATATCAAGGGATCCTGGTaGAGTCCTTATGTTGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: GQLQAVLCVILSGNFSQDIKGSW*SPYVES Trigger: ACTCTCAACATAAGGACTGCACCAGGATCCCTTGAT...ATCTTGAGAAAAATTACCAGAGAGAATGACACAGAGTACCGCTTGAAGTTGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| 3UTR CAA 72 bp | ATCTCTGCTTTGCTGCTTGCTAGCTGTGTGACAAGCTaGAGAAACTTTACATCATGTAAACTGAGGCTGATA | + |
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Preference number: 4 (lower is better) Translates to: ISALLLASCVTS*RNFTSCKLRLI Trigger: TATCAGCCTCAGTTTACATGATGTAAAGTTTCTCAAGCTTGTCACACAGCTAGCAAGCAGCAAAGCAGAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR GCA 90 bp | AGAGGCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCTTCAGTTTATTCATTaGATTAGTGCGAACCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: RGKNCPWLLYKQVLGFFHLQFIH*ISANLP Trigger: CGGAAGGTTCGCACTAATGCAATGAATAAACTGAAG...ATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR TCA 90 bp | GCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCAACGAGGTTTTGTCCTTTaGCTTCTTCAGTTTATTCAT | + |
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Preference number: 4 (lower is better) Translates to: AKTALGCFINKFWGSSIQRGFVL*LLQFIH Trigger: ATGAATAAACTGAAGAAGTCAAAGGACAAAACCTCG...TTGGATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CAA 90 bp | GAGGCTCCTGTGTTGATGAGAGGAGCTGCTAAGCCTGACAGCGGCCCTAGTGCTCTTTGGCTTTCTTGGTaGCAAAATGGCGAACTGGTA | + |
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Preference number: 5 (lower is better) Translates to: EAPVLMRGAAKPDSGPSALWLSW*QNGELV Trigger: TACCAGTTCGCCATTTTGCAACCAAGAAAGCCAAAG...AGCACTAGGGCCGCTGTCAGGCTTAGCAGCTCCTCTCATCAACACAGGAGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CAA 90 bp | GCAGTCAGACTGAAGGCCCACATTAATCCAAATGAGTTTAACACAAGGGCAGGGCGTGTCGTCTGCCATTaGGCTGATCTGCTTCTCGAT | + |
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Preference number: 5 (lower is better) Translates to: AVRLKAHINPNEFNTRAGRVVCH*ADLLLD Trigger: ATCGAGAAGCAGATCAGCCAAATGGCAGACGACACG...CCCTGCCCTTGTGTTAAACTCATTTGGATTAATGTGGGCCTTCAGTCTGACTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CAA 90 bp | TGTGGTGACACCACAGTCAAGGTCACTGCCAGAGTAAAGGTCCTCTGCCAACAGTTAGCTTTGGCTTTCTaGGTTGCAAAATGGCGAACT | + |
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Preference number: 5 (lower is better) Translates to: CGDTTVKVTARVKVLCQQLALAF*VAKWRT Trigger: AGTTCGCCATTTTGCAACCAAGAAAGCCAAAGCTAA...CTGTTGGCAGAGGACCTTTACTCTGGCAGTGACCTTGACTGTGGTGTCACCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS-3UTR CAA 90 bp | AGAGGCAAAAACTGCCCTTGGTTGCTTTATAAACAAGTTCTGGGGTTCTTCCATCCGAGGTTTTGTCCTTaGACTTCTTCAGTTTATTCA | + |
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Preference number: 5 (lower is better) Translates to: RGKNCPWLLYKQVLGFFHPRFCP*TSSVYS Trigger: TGAATAAACTGAAGAAGTCAAAGGACAAAACCTCGG...ATGGAAGAACCCCAGAACTTGTTTATAAAGCAACCAAGGGCAGTTTTTGCCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS CAA 72 bp | ATGCTGGTCCAGCTCTGCCACCGTGTCGTCTGCCATTaGGCTGATCTGCTTCTCGATGAGTCTAATGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: MLVQLCHRVVCH*ADLLLDESNGV Trigger: GACACCATTAGACTCATCGAGAAGCAGATCAGCCAAATGGCAGACGACACGGTGGCAGAGCTGGACCAGCAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028250.9 |
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| CDS GCA 72 bp | CTTCTGAAACAGGTCTGGTCAAAGCAGCATGGTAACTaGGAAAAGCAGGGTGCAGCAGGCGAAAGCATCTTA | + |
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Preference number: 6 (lower is better) Translates to: LLKQVWSKQHGN*EKQGAAGESIL Trigger: TAAGATGCTTTCGCCTGCTGCACCCTGCTTTTCGCAGTTACCATGCTGCTTTGACCAGACCTGTTTCAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028250.9 ENSMUST00000132042.2 |
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| CDS TCA 72 bp | AAGATTTGGTCCCAGATCTGTCTAATTTTAAGCCCATaGACTTTTCATAAGACCATCTCCACAAATCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: KIWSQICLILSP*TFHKTISTNLW Trigger: CCAAAGATTTGTGGAGATGGTCTTATGAAAAGTTCATGGGCTTAAAATTAGACAGATCTGGGACCAAATCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132042.2 |
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