Pregenerated sensors for MRPS6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039680Ensembl transcript IDs: ENSMUST00000047429.9
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACAGTGGTACTGTGAACACCCCCACTCCCGACAAACCCCACAAGTaGGATGAAATCTCAGCAGAGACATCAGGGCAGGTCTCGGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: YSGTVNTPTPDKPHK*DEISAETSGQVSAS Trigger: GCTGGCCGAGACCTGCCCTGATGTCTCTGCTGAGATTTCATCCCACTTGTGGGGTTTGTCGGGAGTGGGGGTGTTCACAGTACCACTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| 3UTR TCA 90 bp | TGGTACTGTGAACACCCCCACTCCCGACAAACCCCACAAGTGGGATaGAATCTCAGCAGAGACATCAGGGCAGGTCTCGGCCAGCAGTTT | + |
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Preference number: 1 (lower is better) Translates to: WYCEHPHSRQTPQVG*NLSRDIRAGLGQQF Trigger: AAACTGCTGGCCGAGACCTGCCCTGATGTCTCTGCTGAGATTTCATCCCACTTGTGGGGTTTGTCGGGAGTGGGGGTGTTCACAGTACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| 3UTR TCA 90 bp | ACTCTGCTCCCAGTGTTCCATATAGGCTTGCAAGACAACCAAGTGTaGATGACAAACATTTTGCTCTTGGAAACGCTACAGTGGTACTGT | + |
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Preference number: 1 (lower is better) Translates to: TLLPVFHIGLQDNQV*MTNILLLETLQWYC Trigger: ACAGTACCACTGTAGCGTTTCCAAGAGCAAAATGTTTGTCATTCACACTTGGTTGTCTTGCAAGCCTATATGGAACACTGGGAGCAGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| 3UTR-3UTR TCA 90 bp | GTTCCATATAGGCTTGCAAGACAACCAAGTGTGAATGACAAACATTTTGCTCTTACCCCACAAGTGGGATaGAATCTCAGCAGAGACATC | + |
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Preference number: 2 (lower is better) Translates to: VPYRLARQPSVNDKHFALTPQVG*NLSRDI Trigger: GATGTCTCTGCTGAGATTTCATCCCACTTGTGGGGT...AAGAGCAAAATGTTTGTCATTCACACTTGGTTGTCTTGCAAGCCTATATGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| 3UTR TCA 72 bp | GAACACCCCCACTCCCGACAAACCCCACAAGTGGGATaGAATCTCAGCAGAGACATCAGGGCAGGTCTCGGC | + |
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Preference number: 3 (lower is better) Translates to: EHPHSRQTPQVG*NLSRDIRAGLG Trigger: GCCGAGACCTGCCCTGATGTCTCTGCTGAGATTTCATCCCACTTGTGGGGTTTGTCGGGAGTGGGGGTGTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| 3UTR TCA 72 bp | CCAGTGTTCCATATAGGCTTGCAAGACAACCAAGTGTaGATGACAAACATTTTGCTCTTGGAAACGCTACAG | + |
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Preference number: 3 (lower is better) Translates to: PVFHIGLQDNQV*MTNILLLETLQ Trigger: CTGTAGCGTTTCCAAGAGCAAAATGTTTGTCATTCACACTTGGTTGTCTTGCAAGCCTATATGGAACACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR CCA 90 bp | AGAGACATCAGGGCAGGTCTCGGCCAGCAGTTTCTACCTCCTGCAGCAAAATGGAGCAGCAGCGGTCTCTaGCCGCCGCATGGCTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: RDIRAGLGQQFLPPAAKWSSSGL*PPHGFQ Trigger: CTGAAAGCCATGCGGCGGCCAGAGACCGCTGCTGCT...CCATTTTGCTGCAGGAGGTAGAAACTGCTGGCCGAGACCTGCCCTGATGTCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR CCA 90 bp | CAGGGCAGGTCTCGGCCAGCAGTTTCTACCTCCTGCAGCAAAATGGTCATGGGCTCTCTGGCCGCCGCATaGCTTTCAGAATCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: QGRSRPAVSTSCSKMVMGSLAAA*LSESKP Trigger: TGGCTTTGATTCTGAAAGCCATGCGGCGGCCAGAGA...GCCCATGACCATTTTGCTGCAGGAGGTAGAAACTGCTGGCCGAGACCTGCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR CCA 90 bp | GATGAAATCTCAGCAGAGACATCAGGGCAGGTCTCGGCCAGCAGTTTCTACCTCTTCTTCAAGTGGGACTaGGACTATGCCGTCACACTC | + |
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Preference number: 4 (lower is better) Translates to: DEISAETSGQVSASSFYLFFKWD*DYAVTL Trigger: GAGTGTGACGGCATAGTCCCAGTCCCACTTGAAGAA...GAGGTAGAAACTGCTGGCCGAGACCTGCCCTGATGTCTCTGCTGAGATTTCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR GCA 90 bp | CTTGCAAGACAACCAAGTGTGAATGACAAACATTTTGCTCTTGGAAACGCTACAGTGGGACTGGGACTATaGCGTCACACTCTTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: LARQPSVNDKHFALGNATVGLGL*RHTLLL Trigger: AAGTAAAAGAGTGTGACGGCATAGTCCCAGTCCCAC...TGTAGCGTTTCCAAGAGCAAAATGTTTGTCATTCACACTTGGTTGTCTTGCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR CCA 90 bp | CTTGCAAGACAACCAAGTGTGAATGACAAACATTTTGCTCTTGGAAACGCTACACAGTTTTTCTTCAAGTaGGACTGGGACTATGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: LARQPSVNDKHFALGNATQFFFK*DWDYAV Trigger: GACGGCATAGTCCCAGTCCCACTTGAAGAAAAACTG...TGTAGCGTTTCCAAGAGCAAAATGTTTGTCATTCACACTTGGTTGTCTTGCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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| CDS-3UTR CCA 90 bp | GACAACAACCTAGCAGCACCCATAGTGCCCTTAGGATTAAATATAAGGCCAGAAGTGTTTCACAATATTTaGTCTAACCACGTCAATGTC | + |
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Preference number: 4 (lower is better) Translates to: DNNLAAPIVPLGLNIRPEVFHNI*SNHVNV Trigger: GACATTGACGTGGTTAGACCAAATATTGTGAAACAC...TTCTGGCCTTATATTTAATCCTAAGGGCACTATGGGTGCTGCTAGGTTGTTGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047429.9 |
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