Pregenerated sensors for MRPS36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061474Ensembl transcript IDs: ENSMUST00000078573.5, ENSMUST00000109333.8
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAAACCCTTCTGTCTGGTaGCAAGCAGCAGCCACGACG | + |
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Preference number: 2 (lower is better) Translates to: DTSDHLEFLYFILLTEYLNPSVW*QAAATT Trigger: CGTCGTGGCTGCTGCTTGTCACCAGACAGAAGGGTT...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078573.5 ENSMUST00000109333.8 |
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| CDS-3UTR GCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAGTGGGAGGGGAGCGCTaGAGACCCCAAAGCTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: DTSDHLEFLYFILLTEYLVGGER*RPQSFT Trigger: AGTGAAGCTTTGGGGTCTGCAGCGCTCCCCTCCCAC...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078573.5 |
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| CDS-3UTR CCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAGAAATTGCAGAGGAGTaGGAGGGGAGCGCTGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: DTSDHLEFLYFILLTEYLEIAEE*EGSAAD Trigger: GTCTGCAGCGCTCCCCTCCCACTCCTCTGCAATTTC...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078573.5 ENSMUST00000109333.8 |
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| CDS-3UTR CCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAGTGTCTGGTGGCCCCTaGTGCATCAGTAAATCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: DTSDHLEFLYFILLTEYLVSGGP*CISKSG Trigger: CCCCGATTTACTGATGCACCAGGGGCCACCAGACAC...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078573.5 ENSMUST00000109333.8 |
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| CDS-3UTR TCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAAGACCCCAAAGCTTCTaGGGCACTGAGTTTAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DTSDHLEFLYFILLTEYLRPQSF*GTEFRF Trigger: AAACCTAAACTCAGTGCCTCAGAAGCTTTGGGGTCT...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109333.8 |
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| CDS-3UTR TCA 90 bp | GATACAAGTGACCACCTGGAGTTTCTGTACTTCATTCTGCTCACAGAATATTTAAATTCCATTTCCTCTTaGGACATAGGTTTCCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: DTSDHLEFLYFILLTEYLNSISS*DIGFLL Trigger: CAGAAGGAAACCTATGTCTCAAGAGGAAATGGAATT...TAAATATTCTGTGAGCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078573.5 ENSMUST00000109333.8 |
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