Pregenerated sensors for MRPS33 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029918Ensembl transcript IDs: ENSMUST00000031978.9, ENSMUST00000114797.2, ENSMUST00000201461.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGGCTCACTGGTCAGAGAGAGGCAAGGTTAGGGTTGGGTCGGGATaGAATGGAGGAATAAAGAAAGCACAGGACATTCATTTAGGGAGG | + |
|
Preference number: 1 (lower is better) Translates to: KAHWSERGKVRVGSG*NGGIKKAQDIHLGR Trigger: CCTCCCTAAATGAATGTCCTGTGCTTTCTTTATTCCTCCATTGCATCCCGACCCAACCCTAACCTTGCCTCTCTCTGACCAGTGAGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031978.9 |
||
| 3UTR TCA 90 bp | CACAGCTTAACTGAAGTAAAACGTGAACACAGGGTTGGCGTCTACTaGGGGAAGTCATGTTCCTCTAATACTCGGGAAGATAATGAGATG | + |
|
Preference number: 1 (lower is better) Translates to: HSLTEVKREHRVGVY*GKSCSSNTREDNEM Trigger: CATCTCATTATCTTCCCGAGTATTAGAGGAACATGACTTCCCTCAGTAGACGCCAACCCTGTGTTCACGTTTTACTTCAGTTAAGCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| 3UTR GCA 90 bp | ACTGAGGGAAGTCATGTTCCTCTAATACTCGGGAAGATAATGAGATaGACTTTCTTAGTCACTGAGGAAGGCATTTGCTTTCTTGATGAG | + |
|
Preference number: 1 (lower is better) Translates to: TEGSHVPLILGKIMR*TFLVTEEGICFLDE Trigger: CTCATCAAGAAAGCAAATGCCTTCCTCAGTGACTAAGAAAGTGCATCTCATTATCTTCCCGAGTATTAGAGGAACATGACTTCCCTCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| 3UTR-3UTR GCA 90 bp | AACACAGGGTTGGCGTCTACTGAGGGAAGTCATGTTCCTCTAATACTCGGGAAGACTGAGGAAGGCATTTaGTTTCTTGATGAGCTGATG | + |
|
Preference number: 2 (lower is better) Translates to: NTGLASTEGSHVPLILGKTEEGI*FLDELM Trigger: CATCAGCTCATCAAGAAAGCAAATGCCTTCCTCAGT...CTTCCCGAGTATTAGAGGAACATGACTTCCCTCAGTAGACGCCAACCCTGTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| 3UTR-3UTR GCA 90 bp | AACGTGAACACAGGGTTGGCGTCTACTGAGGGAAGTCATGTTCCTCTAATACTCGGGAAGATAATGAGATaGACTTTCTTAGTCACTGAG | + |
|
Preference number: 2 (lower is better) Translates to: NVNTGLASTEGSHVPLILGKIMR*TFLVTE Trigger: CTCAGTGACTAAGAAAGTGCATCTCATTATCTTCCC...GAGTATTAGAGGAACATGACTTCCCTCAGTAGACGCCAACCCTGTGTTCACGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGCACCTTCTAAAGAGCAAGCTTAATGGTGAATACAAAGGCTCACTGGTCAGATGGGTCGGGATGCAATaGAGGAATAAAGAAAGCACA | + |
|
Preference number: 2 (lower is better) Translates to: KHLLKSKLNGEYKGSLVRWVGMQ*RNKEST Trigger: TGTGCTTTCTTTATTCCTCCATTGCATCCCGACCCA...TCTGACCAGTGAGCCTTTGTATTCACCATTAAGCTTGCTCTTTAGAAGGTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031978.9 |
||
| 3UTR-3UTR GCA 90 bp | GGTTCTCCAGCTCCAATCCTAACAGCCATTCCAATCTTAAACACATCAGTCAACGGGAAGATAATGAGATaGACTTTCTTAGTCACTGAG | + |
|
Preference number: 2 (lower is better) Translates to: GSPAPILTAIPILNTSVNGKIMR*TFLVTE Trigger: CTCAGTGACTAAGAAAGTGCATCTCATTATCTTCCC...GTTGACTGATGTGTTTAAGATTGGAATGGCTGTTAGGATTGGAGCTGGAGAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031978.9 |
||
| 3UTR-3UTR GCA 90 bp | TTCTTAGTCACTGAGGAAGGCATTTGCTTTCTTGATGAGCTGATGCTATTTCTTACTGAGGAAGGCATTTaGTTTCTTGATGAGCTGATG | + |
|
Preference number: 2 (lower is better) Translates to: FLVTEEGICFLDELMLFLTEEGI*FLDELM Trigger: CATCAGCTCATCAAGAAAGCAAATGCCTTCCTCAGT...AAGAAATAGCATCAGCTCATCAAGAAAGCAAATGCCTTCCTCAGTGACTAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114797.2 ENSMUST00000201461.2 |
||
| 3UTR TCA 72 bp | ACTGAAGTAAAACGTGAACACAGGGTTGGCGTCTACTaGGGGAAGTCATGTTCCTCTAATACTCGGGAAGAT | + |
|
Preference number: 3 (lower is better) Translates to: TEVKREHRVGVY*GKSCSSNTRED Trigger: ATCTTCCCGAGTATTAGAGGAACATGACTTCCCTCAGTAGACGCCAACCCTGTGTTCACGTTTTACTTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| 3UTR GCA 72 bp | AGTCATGTTCCTCTAATACTCGGGAAGATAATGAGATaGACTTTCTTAGTCACTGAGGAAGGCATTTGCTTT | + |
|
Preference number: 3 (lower is better) Translates to: SHVPLILGKIMR*TFLVTEEGICF Trigger: AAAGCAAATGCCTTCCTCAGTGACTAAGAAAGTGCATCTCATTATCTTCCCGAGTATTAGAGGAACATGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031978.9 ENSMUST00000114797.2 |
||
| CDS-3UTR GCA 90 bp | CCAGTTAAGCACCTTCTAAAGAGCAAGCTTAATGGTGAATACAAAGGCTCACTGCACTCAGACGAGACATaGGCAGTGCATACTCCGAAA | + |
|
Preference number: 4 (lower is better) Translates to: PVKHLLKSKLNGEYKGSLHSDET*AVHTPK Trigger: TTTCGGAGTATGCACTGCGCATGTCTCGTCTGAGTG...CAGTGAGCCTTTGTATTCACCATTAAGCTTGCTCTTTAGAAGGTGCTTAACTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031978.9 |
||
| CDS-3UTR GCA 90 bp | TTCTTAGTCACTGAGGAAGGCATTTGCTTTCTTGATGAGCTGATGCTATTTCTTCACTCAGACGAGACATaGGCAGTGCATACTCCGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FLVTEEGICFLDELMLFLHSDET*AVHTPK Trigger: TTTCGGAGTATGCACTGCGCATGTCTCGTCTGAGTG...AAGAAATAGCATCAGCTCATCAAGAAAGCAAATGCCTTCCTCAGTGACTAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114797.2 ENSMUST00000201461.2 |
||