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Pregenerated sensors for MRPS31 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031533

Ensembl transcript IDs: ENSMUST00000033934.5

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GTTGGCTTCTCCTGCTTAAGAGAACTGTCCATGTCTTCGTCAAACTaGATCTGGTGCTGTGGCCTTGTACTAGCTCTCCCGGAGGGAGAC +
Preference number: 5 (lower is better)
Translates to: VGFSCLRELSMSSSN*IWCCGLVLALPEGD
Trigger: GTCTCCCTCCGGGAGAGCTAGTACAAGGCCACAGCACCAGATTCAGTTTGACGAAGACATGGACAGTTCTCTTAAGCAGGAGAAGCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS GCA 90 bp TCCTCAAATCCATTCTCAAAGGGCTGGTCAGCTACCGAGGCTAACTaGTTAGCAAACTCTATCTCCCAGAGAGAAGGTGATGCTTCTGGT +
Preference number: 5 (lower is better)
Translates to: SSNPFSKGWSATEAN*LANSISQREGDASG
Trigger: ACCAGAAGCATCACCTTCTCTCTGGGAGATAGAGTTTGCTAAGCAGTTAGCCTCGGTAGCTGACCAGCCCTTTGAGAATGGATTTGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS GCA 90 bp GGTCCTTGCTTGGGGAAATCCTCCAGGTACTTATCCAAAAATATATaGTCATGGAATTCGGAGCCATCGTCATCTAAACCTGCTTCATTG +
Preference number: 5 (lower is better)
Translates to: GPCLGKSSRYLSKNI*SWNSEPSSSKPASL
Trigger: CAATGAAGCAGGTTTAGATGACGATGGCTCCGAATTCCATGAGCATATATTTTTGGATAAGTACCTGGAGGATTTCCCCAAGCAAGGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CCA 90 bp TGCTTGGGGAAATCCTCCAGGTACTTATCCAAAAATATATGCTCATaGAATTCGGAGCCATCGTCATCTAAACCTGCTTCATTGTTGACT +
Preference number: 5 (lower is better)
Translates to: CLGKSSRYLSKNICS*NSEPSSSKPASLLT
Trigger: AGTCAACAATGAAGCAGGTTTAGATGACGATGGCTCCGAATTCCATGAGCATATATTTTTGGATAAGTACCTGGAGGATTTCCCCAAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS TCA 72 bp CTTTGGATATTATTTTCTGTCCTCACAGCTCCGGACTaGGCCGCGGGTAGCACAGCCACCGAGACGTCCCGG +
Preference number: 6 (lower is better)
Translates to: LWILFSVLTAPD*AAGSTATETSR
Trigger: CCGGGACGTCTCGGTGGCTGTGCTACCCGCGGCTCAGTCCGGAGCTGTGAGGACAGAAAATAATATCCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CCA 72 bp GGTAGCCTCCAGACTGGCAGAAGGTTTTCTGCCACGTaGCTTTGGTGTTTTCACATTTGCTGTGCTCAGGTC +
Preference number: 6 (lower is better)
Translates to: GSLQTGRRFSAT*LWCFHICCAQV
Trigger: GACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACGTGGCAGAAAACCTTCTGCCAGTCTGGAGGCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CAA 72 bp CCTCCAGACTGGCAGAAGGTTTTCTGCCACGTGGCTTaGGTGTTTTCACATTTGCTGTGCTCAGGTCAACTT +
Preference number: 6 (lower is better)
Translates to: PPDWQKVFCHVA*VFSHLLCSGQL
Trigger: AAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACGTGGCAGAAAACCTTCTGCCAGTCTGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CCA 72 bp CTCCAGACTGGCAGAAGGTTTTCTGCCACGTGGCTTTaGTGTTTTCACATTTGCTGTGCTCAGGTCAACTTT +
Preference number: 6 (lower is better)
Translates to: LQTGRRFSATWL*CFHICCAQVNF
Trigger: AAAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACGTGGCAGAAAACCTTCTGCCAGTCTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS GCA 72 bp TTGGGGAAATCCTCCAGGTACTTATCCAAAAATATATaGTCATGGAATTCGGAGCCATCGTCATCTAAACCT +
Preference number: 6 (lower is better)
Translates to: LGKSSRYLSKNI*SWNSEPSSSKP
Trigger: AGGTTTAGATGACGATGGCTCCGAATTCCATGAGCATATATTTTTGGATAAGTACCTGGAGGATTTCCCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CCA 72 bp AAATCCTCCAGGTACTTATCCAAAAATATATGCTCATaGAATTCGGAGCCATCGTCATCTAAACCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: KSSRYLSKNICS*NSEPSSSKPAS
Trigger: TGAAGCAGGTTTAGATGACGATGGCTCCGAATTCCATGAGCATATATTTTTGGATAAGTACCTGGAGGATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5
CDS CAA 72 bp GAAATTTCATTGGCTGGAACAGACTGGTCAACTTTCTaGCTACAGATTGATCTGCTAGTGCAAAAATGTCTT +
Preference number: 6 (lower is better)
Translates to: EISLAGTDWSTF*LQIDLLVQKCL
Trigger: AAGACATTTTTGCACTAGCAGATCAATCTGTAGCAAGAAAGTTGACCAGTCTGTTCCAGCCAATGAAATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033934.5