RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRPS30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021731

Ensembl transcript IDs: ENSMUST00000022245.10

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATTCCCAGGACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTaGTGCCCTCTCCTGGTCTCTACAGGCACTGCACCCACAATGTAC +
Preference number: 1 (lower is better)
Translates to: IPRTQPVALAVTPGF*CPLLVSTGTAPTMY
Trigger: GTACATTGTGGGTGCAGTGCCTGTAGAGACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGTCCTGGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR CAA 90 bp GGCTCAGTGATTAAGAACACTGGTTGCTCTTCCAGAACACCTAGTTaGATTCCCAGGACCCAACCTGTAGCTCTAGCAGTAACTCCAGGG +
Preference number: 2 (lower is better)
Translates to: GSVIKNTGCSSRTPS*IPRTQPVALAVTPG
Trigger: CCCTGGAGTTACTGCTAGAGCTACAGGTTGGGTCCTGGGAATCAAACTAGGTGTTCTGGAAGAGCAACCAGTGTTCTTAATCACTGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCAAACATTCACTGGGCTaGATTAAAAAGATGCTGCCA +
Preference number: 2 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVKHSLG*IKKMLP
Trigger: TGGCAGCATCTTTTTAATCCAGCCCAGTGAATGTTT...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CCA 90 bp AGCCAGGGATGTGTTCAATCAAGGCAATCTAGGCTTATTTATGAAGTAATCATGCATATGGGGTGGGGGTaGGGAAGCAAATGTGTGGAG +
Preference number: 2 (lower is better)
Translates to: SQGCVQSRQSRLIYEVIMHMGWG*GSKCVE
Trigger: CTCCACACATTTGCTTCCCCACCCCCACCCCATATG...CATGATTACTTCATAAATAAGCCTAGATTGCCTTGATTGAACACATCCCTGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR GCA 90 bp GGGACTAAAAGAACAGAGACCAGAATAAAATTTGGAGGGTTGTCAATATTTGAACATGTGTGTGCCTGGTaGCTTAGAGGTCAGGCGAGG +
Preference number: 2 (lower is better)
Translates to: GTKRTETRIKFGGLSIFEHVCAW*LRGQAR
Trigger: CCTCGCCTGACCTCTAAGGCACCAGGCACACACATG...TTCAAATATTGACAACCCTCCAAATTTTATTCTGGTCTCTGTTCTTTTAGTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CCA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTTCTGCTGCCCTCTCCTaGTCTCTACAGGCACTGCAC +
Preference number: 2 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPSAALS*SLQALH
Trigger: GTGCAGTGCCTGTAGAGACCAGGAGAGGGCAGCAGA...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR GCA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATGCTGGATTAAAAAGATaGTGCCACTATAGCCTAGTC +
Preference number: 2 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNAGLKR*CHYSLV
Trigger: GACTAGGCTATAGTGGCAGCATCTTTTTAATCCAGC...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTAGCACCCCACTGTATTaGCTTTTAAATGACACAAAA +
Preference number: 2 (lower is better)
Translates to: KPSCSLCKTALFEECSKTSTPLY*LLNDTK
Trigger: TTTTGTGTCATTTAAAAGGCAATACAGTGGGGTGCT...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CCA 90 bp ATGTTAGACCTCAAGCTAAAGGAACTAGTAATTAACTCACATCCATCCAACTTACCCCTAAACATTCACTaGGCTGGATTAAAAAGATGC +
Preference number: 2 (lower is better)
Translates to: MLDLKLKELVINSHPSNLPLNIH*AGLKRC
Trigger: GCATCTTTTTAATCCAGCCCAGTGAATGTTTAGGGG...TAAGTTGGATGGATGTGAGTTAATTACTAGTTCCTTTAGCTTGAGGTCTAACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR GCA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTGGATTAAAAAGATGCTaGCACTATAGCCTAGTCATA +
Preference number: 2 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPGLKRC*HYSLVI
Trigger: TATGACTAGGCTATAGTGGCAGCATCTTTTTAATCC...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR GCA 72 bp CAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTaGCCTCTCCTGGTCTCTACAGGCACTGCACCCACA +
Preference number: 3 (lower is better)
Translates to: QPVALAVTPGFC*PLLVSTGTAPT
Trigger: TGTGGGTGCAGTGCCTGTAGAGACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CAA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCCTTTCAGTCAAGAAATaGACCAGAATGCAAGGTTTA +
Preference number: 3 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVLSVKK*TRMQGL
Trigger: TAAACCTTGCATTCTGGTCAATTTCTTGACTGAAAG...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CAA 90 bp ATGTTAGACCTCAAGCTAAAGGAACTAGTAATTAACTCACATCCATCCAACTTAAAGGGTGGCCTCACTTaGTCCCCAGCAGCACTTACA +
Preference number: 3 (lower is better)
Translates to: MLDLKLKELVINSHPSNLKGGLT*SPAALT
Trigger: TGTAAGTGCTGCTGGGGACAAAGTGAGGCCACCCTT...TAAGTTGGATGGATGTGAGTTAATTACTAGTTCCTTTAGCTTGAGGTCTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR-3UTR CAA 90 bp GGGACTAAAAGAACAGAGACCAGAATAAAATTTGGAGGGTTGTCAATATTTGAAATGTGTATGAGTGTTTaGCACACATGTGTCTATGCA +
Preference number: 3 (lower is better)
Translates to: GTKRTETRIKFGGLSIFEMCMSV*HTCVYA
Trigger: TGCATAGACACATGTGTGCAAAACACTCATACACAT...TTCAAATATTGACAACCCTCCAAATTTTATTCTGGTCTCTGTTCTTTTAGTCCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCTTCCTTCTCCTGGCTTaGCAACAGCTGTGCTCCGTC +
Preference number: 4 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVFLLLA*QQLCSV
Trigger: GACGGAGCACAGCTGTTGGCAAGCCAGGAGAAGGAA...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTCGCTGCACCCGCCGCTaGCGCGCCGCTTTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: KPSCSLCKTALFEECSKTRCTRR*RAALLS
Trigger: CGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCG...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp GCAGCACTTACAAATGCCCCTAAACATTCACTGGGCTGGATTAAAAAGATGCTGCCTGCTCCTGCAAGATaGAGTCGCACACGGCGGCGC +
Preference number: 4 (lower is better)
Translates to: AALTNAPKHSLGWIKKMLPAPAR*SRTRRR
Trigger: GCGCCGCCGTGTGCGACTGCATCTTGCAGGAGCAGG...CAGCATCTTTTTAATCCAGCCCAGTGAATGTTTAGGGGCATTTGTAAGTGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCGATGGAGTAATCCAATaGCACAAACTCTGGGAGTTG +
Preference number: 4 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVDGVIQ*HKLWEL
Trigger: CAACTCCCAGAGTTTGTGCCATTGGATTACTCCATC...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCTTGGTACATAGCTTGTaGTCCAGTCCAAGCAAAAAG +
Preference number: 4 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVLVHSL*SSPSKK
Trigger: CTTTTTGCTTGGACTGGAGCACAAGCTATGTACCAA...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCCAATGGCACAAACTCTaGGAGTTGCTTAGATATTCG +
Preference number: 4 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVQWHKL*ELLRYS
Trigger: CGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTG...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR CAA 72 bp AAGCAGCAGAGCCAGGTCAATAAGGGTGGCCTCACTTaGTCCCCAGCAGCACTTACAAATGCCCCTAAACAT +
Preference number: 4 (lower is better)
Translates to: KQQSQVNKGGLT*SPAALTNAPKH
Trigger: ATGTTTAGGGGCATTTGTAAGTGCTGCTGGGGACAAAGTGAGGCCACCCTTATTGACCTGGCTCTGCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp GCAGCACTTACAAATGCCCCTAAACATTCACTGGGCTGGATTAAAAAGATGCTGGTCTTGGTGAAGCTCTaGTACCAGCGGTCGGCGTTC +
Preference number: 4 (lower is better)
Translates to: AALTNAPKHSLGWIKKMLVLVKL*YQRSAF
Trigger: GAACGCCGACCGCTGGTACCAGAGCTTCACCAAGAC...CAGCATCTTTTTAATCCAGCCCAGTGAATGTTTAGGGGCATTTGTAAGTGCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp ACCCAACCTGTAGCTCTAGCAGTAACTCCAGGGTTCTGCTGCCCTCTCCTGGTCCAATGGAAGCTTGTCTaGTTTACATTTCATCACAGG +
Preference number: 4 (lower is better)
Translates to: TQPVALAVTPGFCCPLLVQWKLV*FTFHHR
Trigger: CCTGTGATGAAATGTAAACCAGACAAGCTTCCATTG...GACCAGGAGAGGGCAGCAGAACCCTGGAGTTACTGCTAGAGCTACAGGTTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp GGGACTAAAAGAACAGAGACCAGAATAAAATTTGGAGGGTTGTCAATATTTGAACTACCTGGTCCAGGATaGAGGAGGCGAGGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: GTKRTETRIKFGGLSIFELPGPG*RRRGPG
Trigger: GCCAGGCCCTCGCCTCCTCCATCCTGGACCAGGTAG...TTCAAATATTGACAACCCTCCAAATTTTATTCTGGTCTCTGTTCTTTTAGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp AGCCAGGGATGTGTTCAATCAAGGCAATCTAGGCTTATTTATGAAGTAATCATGAGCGTCCTCACTACCTaGTCCAGGATGGAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: SQGCVQSRQSRLIYEVIMSVLTT*SRMEEA
Trigger: CGCCTCCTCCATCCTGGACCAGGTAGTGAGGACGCT...CATGATTACTTCATAAATAAGCCTAGATTGCCTTGATTGAACACATCCCTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR TCA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATTGCTCAGGACAGGGTTaGGTGGAGCGAGCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNCSGQG*VERAGS
Trigger: TGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCA...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR TCA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATCAAACACGGTCTTGGTaGAGCTCTGGTACCAGCGGT +
Preference number: 4 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNQTRSW*SSGTSG
Trigger: ACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTG...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR CAA 72 bp ATTAAGAACACTGGTTGCTCTTCCAGAACACCTAGTTaGATTCCCAGGACCCAACCTGTAGCTCTAGCAGTA +
Preference number: 4 (lower is better)
Translates to: IKNTGCSSRTPS*IPRTQPVALAV
Trigger: TACTGCTAGAGCTACAGGTTGGGTCCTGGGAATCAAACTAGGTGTTCTGGAAGAGCAACCAGTGTTCTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTAGGTCGAGTAACATCTaGTTCGCTCCAGAACCCTTG +
Preference number: 4 (lower is better)
Translates to: KPSCSLCKTALFEECSKTRSSNI*FAPEPL
Trigger: CAAGGGTTCTGGAGCGAAGCAGATGTTACTCGACCT...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp GGGACTAAAAGAACAGAGACCAGAATAAAATTTGGAGGGTTGTCAATATTTGAACAGGACAGGGTTGAGTaGAGCGAGCAGGTTCACGAG +
Preference number: 4 (lower is better)
Translates to: GTKRTETRIKFGGLSIFEQDRVE*SEQVHE
Trigger: CTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTG...TTCAAATATTGACAACCCTCCAAATTTTATTCTGGTCTCTGTTCTTTTAGTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp GCAGCACTTACAAATGCCCCTAAACATTCACTGGGCTGGATTAAAAAGATGCTGACGTACTTCTTGAACTaGATCTTGGTGAGAATCCGT +
Preference number: 4 (lower is better)
Translates to: AALTNAPKHSLGWIKKMLTYFLN*ILVRIR
Trigger: ACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGT...CAGCATCTTTTTAATCCAGCCCAGTGAATGTTTAGGGGCATTTGTAAGTGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp AGCCAGGGATGTGTTCAATCAAGGCAATCTAGGCTTATTTATGAAGTAATCATGTCAAGTTCCTTCTCCTaGCTTGCCAACAGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: SQGCVQSRQSRLIYEVIMSSSFS*LANSCA
Trigger: AGCACAGCTGTTGGCAAGCCAGGAGAAGGAACTTGA...CATGATTACTTCATAAATAAGCCTAGATTGCCTTGATTGAACACATCCCTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
3UTR CAA 72 bp TCCTGGTCTCTACAGGCACTGCACCCACAATGTACATaGACATTCAGGAAAACACCAAAACACACAAAGAAA +
Preference number: 4 (lower is better)
Translates to: SWSLQALHPQCT*TFRKTPKHTKK
Trigger: TTTCTTTGTGTGTTTTGGTGTTTTCCTGAATGTCAATGTACATTGTGGGTGCAGTGCCTGTAGAGACCAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp ATGTTAGACCTCAAGCTAAAGGAACTAGTAATTAACTCACATCCATCCAACTTAGATGACCAGCAGGAATaGGTTCTTCACCACGCAACC +
Preference number: 4 (lower is better)
Translates to: MLDLKLKELVINSHPSNLDDQQE*VLHHAT
Trigger: GGTTGCGTGGTGAAGAACGCATTCCTGCTGGTCATC...TAAGTTGGATGGATGTGAGTTAATTACTAGTTCCTTTAGCTTGAGGTCTAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTAAGACAGCTTCTACCTaGTCAGCTTGGTTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: KPSCSLCKTALFEECSKTKTAST*SAWFCL
Trigger: AAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTT...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp TCAGTCAAGAAATTGACCAGAATGCAAGGTTTAATGACAGGTCAACATAAGAAATCGCTCCAGAACCCTTaGTACATAGCTTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SVKKLTRMQGLMTGQHKKSLQNP*YIACAP
Trigger: TGGAGCACAAGCTATGTACCAAGGGTTCTGGAGCGA...TTTCTTATGTTGACCTGTCATTAAACCTTGCATTCTGGTCAATTTCTTGACTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTACAAACTCTGGGAGTTaGTTAGATATTCGAATCTGG +
Preference number: 4 (lower is better)
Translates to: KPSCSLCKTALFEECSKTTNSGS*LDIRIW
Trigger: CCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGT...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTCCAAGCAAAAAGACTTaGAATGGCATTAGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: KPSCSLCKTALFEECSKTPSKKT*NGISSE
Trigger: TTCAGAGCTAATGCCATTGCAAGTCTTTTTGCTTGG...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR GCA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATATACTGTTTTCATACTaGCGTCTGAACAATGGAAGC +
Preference number: 4 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNILFSY*RLNNGS
Trigger: GCTTCCATTGTTCAGACGGCAGTATGAAAACAGTAT...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CCA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTCTGCCGTCTGAACAATaGAAGCTTGTCTGGTTTACA +
Preference number: 4 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPLPSEQ*KLVWFT
Trigger: TGTAAACCAGACAAGCTTCCATTGTTCAGACGGCAG...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR TCA 90 bp AGCCAGGGATGTGTTCAATCAAGGCAATCTAGGCTTATTTATGAAGTAATCATGTTATTTAGCAGAAAGTaGACTATCTGCAGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: SQGCVQSRQSRLIYEVIMLFSRK*TICRRV
Trigger: TACTCTCCTGCAGATAGTTCACTTTCTGCTAAATAA...CATGATTACTTCATAAATAAGCCTAGATTGCCTTGATTGAACACATCCCTGGCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp GAGGGGGCCGCGTGCACCGTCGCCTGCCAGCGCTGCACCCGCCGCTaGCGCGCCGCTTTGCTGTCGGCGGTCATGGAAGCCACGATCGGC +
Preference number: 5 (lower is better)
Translates to: EGAACTVACQRCTRR*RAALLSAVMEATIG
Trigger: GCCGATCGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCACGCGGCCCCCTC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp AGCGCTGCACCCGCCGCTGCCGCGCCGCTTTGCTGTCGGCGGTCATaGAAGCCACGATCGGCGGGTACCGCGCGACGGGCGTCGCCACGA +
Preference number: 5 (lower is better)
Translates to: SAAPAAAAPLCCRRS*KPRSAGTARRASPR
Trigger: TCGTGGCGACGCCCGTCGCGCGGTACCCGCCGATCGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp TTCTCGTCCACCGAGGGGGCCGCGTGCACCGTCGCCTGCCAGCGCTaGACCCGCCGCTGCCGCGCCGCTTTGCTGTCGGCGGTCATGGAA +
Preference number: 5 (lower is better)
Translates to: FSSTEGAACTVACQR*TRRCRAALLSAVME
Trigger: TTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCACGCGGCCCCCTCGGTGGACGAGAA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp ATCCGTATCTTCTCGTCCACCGAGGGGGCCGCGTGCACCGTCGCCTaGCAGCGCTGCACCCGCCGCTGCCGCGCCGCTTTGCTGTCGGCG +
Preference number: 5 (lower is better)
Translates to: IRIFSSTEGAACTVA*QRCTRRCRAALLSA
Trigger: CGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCACGCGGCCCCCTCGGTGGACGAGAAGATACGGAT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp ATCTTGGTGAGAATCCGTATCTTCTCGTCCACCGAGGGGGCCGCGTaGACCGTCGCCTGCCAGCGCTGCACCCGCCGCTGCCGCGCCGCT +
Preference number: 5 (lower is better)
Translates to: ILVRIRIFSSTEGAA*TVACQRCTRRCRAA
Trigger: AGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCACGCGGCCCCCTCGGTGGACGAGAAGATACGGATTCTCACCAAGAT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 90 bp ACAGCGCCGGGGCGGGCGGCAGGCCCGAGACAAACACGGTCTTGGTaGAGCTCTGGTACCAGCGGTCGGCGTTCAAGGCGGAGATCTGCG +
Preference number: 5 (lower is better)
Translates to: TAPGRAAGPRQTRSW*SSGTSGRRSRRRSA
Trigger: CGCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCCGCCCGCCCCGGCGCTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp GTGGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTGGTCCAGGATaGAGGAGGCGAGGGCCTGGCGACGATCGAAGAGGGAGCGGGGCC +
Preference number: 5 (lower is better)
Translates to: VERAGSRASSLPGPG*RRRGPGDDRRGSGA
Trigger: GGCCCCGCTCCCTCTTCGATCGTCGCCAGGCCCTCGCCTCCTCCATCCTGGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp GGGGCGGGCGGCAGGCCCGAGACAAACACGGTCTTGGTGAAGCTCTaGTACCAGCGGTCGGCGTTCAAGGCGGAGATCTGCGGATGCACC +
Preference number: 5 (lower is better)
Translates to: GAGGRPETNTVLVKL*YQRSAFKAEICGCT
Trigger: GGTGCATCCGCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCCGCCCGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 90 bp CAACAGAGCGTTTACAATCGAGAGCGGCAGTGCTCAGGACAGGGTTaGGTGGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTGGTCCA +
Preference number: 5 (lower is better)
Translates to: QQSVYNRERQCSGQG*VERAGSRASSLPGP
Trigger: TGGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGTAAACGCTCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp AGAGCGTTTACAATCGAGAGCGGCAGTGCTCAGGACAGGGTTGAGTaGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTGGTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: RAFTIESGSAQDRVE*SEQVHERPHYLVQD
Trigger: ATCCTGGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGTAAACGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp GCGTTCAAGGCGGAGATCTGCGGATGCACCACGTACTTCTTGAACTaGATCTTGGTGAGAATCCGTATCTTCTCGTCCACCGAGGGGGCC +
Preference number: 5 (lower is better)
Translates to: AFKAEICGCTTYFLN*ILVRIRIFSSTEGA
Trigger: GGCCCCCTCGGTGGACGAGAAGATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAACGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp AAGCTCTGGTACCAGCGGTCGGCGTTCAAGGCGGAGATCTGCGGATaGACCACGTACTTCTTGAACTGCATCTTGGTGAGAATCCGTATC +
Preference number: 5 (lower is better)
Translates to: KLWYQRSAFKAEICG*TTYFLNCILVRIRI
Trigger: GATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp TTGGTGAAGCTCTGGTACCAGCGGTCGGCGTTCAAGGCGGAGATCTaGGGATGCACCACGTACTTCTTGAACTGCATCTTGGTGAGAATC +
Preference number: 5 (lower is better)
Translates to: LVKLWYQRSAFKAEI*GCTTYFLNCILVRI
Trigger: GATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTGTGCTCAGGACAGGGTaGAGTGGAGCGAGCAGGTTC +
Preference number: 5 (lower is better)
Translates to: KPSCSLCKTALFEECSKTVLRTG*SGASRF
Trigger: GAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCAC...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp CTTGCAATGGCATTAGCTCTGAAGACAGCTTCTACCTGCTCAGCTTaGTTCTGTCTTATCAGTCTCTCTCTCTTCAGTCTGTCAGGTATC +
Preference number: 5 (lower is better)
Translates to: LAMALALKTASTCSA*FCLISLSLFSLSGI
Trigger: GATACCTGACAGACTGAAGAGAGAGAGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCCATTGCAAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp GGTATCGTAAAGCATCAATATGGCCTTTTCGATGACCAGCAGGAATaGGTTCTTCACCACGCAACCAGTAAAAGTCAACAGAGCGTTTAC +
Preference number: 5 (lower is better)
Translates to: GIVKHQYGLFDDQQE*VLHHATSKSQQSVY
Trigger: GTAAACGCTCTGTTGACTTTTACTGGTTGCGTGGTGAAGAACGCATTCCTGCTGGTCATCGAAAAGGCCATATTGATGCTTTACGATACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp GCAAAAAGACTTGCAATGGCATTAGCTCTGAAGACAGCTTCTACCTaGTCAGCTTGGTTCTGTCTTATCAGTCTCTCTCTCTTCAGTCTG +
Preference number: 5 (lower is better)
Translates to: AKRLAMALALKTAST*SAWFCLISLSLFSL
Trigger: CAGACTGAAGAGAGAGAGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCCATTGCAAGTCTTTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 90 bp GCCAACAGCTGTGCTCCGTCTTCTCTTGGTTTATTTAGCAGAAAGTaGACTATCTGCAGGAGAGTACCATCATCAAAGCCTTTCACATCA +
Preference number: 5 (lower is better)
Translates to: ANSCAPSSLGLFSRK*TICRRVPSSKPFTS
Trigger: TGATGTGAAAGGCTTTGATGATGGTACTCTCCTGCAGATAGTTCACTTTCTGCTAAATAAACCAAGAGAAGACGGAGCACAGCTGTTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATTGCACCACGTACTTCTaGAACTGCATCTTGGTGAGA +
Preference number: 5 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNCTTYF*NCILVR
Trigger: TCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCA...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTTTCGCTCCAGAACCCTaGGTACATAGCTTGTGCTCC +
Preference number: 5 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPFAPEP*VHSLCS
Trigger: GGAGCACAAGCTATGTACCAAGGGTTCTGGAGCGAA...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGCCTTCATGTAGCTTGTGCAAAACAGCCCTGTTTGAAGAATGCTCTAAAACTTTTACGGGGGTTATTTaGATCAGCTTGGACAGTCAG +
Preference number: 5 (lower is better)
Translates to: KPSCSLCKTALFEECSKTFTGVI*ISLDSQ
Trigger: CTGACTGTCCAAGCTGATCAAAATAACCCCCGTAAA...AGTTTTAGAGCATTCTTCAAACAGGGCTGTTTTGCACAAGCTACATGAAGGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 90 bp TTTACATTTCATCACAGGGATTTCTGTAGGGATGGAGTAATCCAATaGCACAAACTCTGGGAGTTGCTTAGATATTCGAATCTGGTTGTG +
Preference number: 5 (lower is better)
Translates to: FTFHHRDFCRDGVIQ*HKLWELLRYSNLVV
Trigger: CACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTGGATTACTCCATCCCTACAGAAATCCCTGTGATGAAATGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATTTCTACCTGCTCAGCTaGGTTCTGTCTTATCAGTCT +
Preference number: 5 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNFYLLS*VLSYQS
Trigger: AGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAA...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTCCCTTGGTACATAGCTaGTGCTCCAGTCCAAGCAAA +
Preference number: 5 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPPLVHS*CSSPSK
Trigger: TTTGCTTGGACTGGAGCACAAGCTATGTACCAAGGG...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATCACAAACTCTGGGAGTaGCTTAGATATTCGAATCTG +
Preference number: 5 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNHKLWE*LRYSNL
Trigger: CAGATTCGAATATCTAAGCAACTCCCAGAGTTTGTG...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 90 bp CATGGATCTGCTGTTTTTGAGCCAGTAAATATACTGTTTTCATACTaGCGTCTGAACAATGGAAGCTTGTCTGGTTTACATTTCATCACA +
Preference number: 5 (lower is better)
Translates to: HGSAVFEPVNILFSY*RLNNGSLSGLHFIT
Trigger: TGTGATGAAATGTAAACCAGACAAGCTTCCATTGTTCAGACGGCAGTATGAAAACAGTATATTTACTGGCTCAAAAACAGCAGATCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp AAGAATTATCAACAACATAGGAGGAAAGCCAGGGATGTGTTCAATCAAGGCAATATCTGGTTGTGTGGTTaGTCATTTATTTGGTATCGT +
Preference number: 5 (lower is better)
Translates to: KNYQQHRRKARDVFNQGNIWLCG*SFIWYR
Trigger: ACGATACCAAATAAATGACAAACCACACAACCAGAT...ATTGCCTTGATTGAACACATCCCTGGCTTTCCTCCTATGTTGTTGATAATTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp TTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAAAGCTTACTCCCTGTTATTTTGATCAGCTaGGACAGTCAGTGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: FPERTDKLWRKLSKSLLPVILIS*DSQCQS
Trigger: ACTTTGGCACTGACTGTCCAAGCTGATCAAAATAAC...AGGGAGTAAGCTTTTAGATAATTTTCTCCATAACTTGTCAGTTCTCTCAGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS-3UTR CAA 90 bp ATGTTAGACCTCAAGCTAAAGGAACTAGTAATTAACTCACATCCATCCAACTTAGTGCTCCGTCTTCTCTaGGTTTATTTAGCAGAAAGT +
Preference number: 5 (lower is better)
Translates to: MLDLKLKELVINSHPSNLVLRLL*VYLAES
Trigger: ACTTTCTGCTAAATAAACCAAGAGAAGACGGAGCAC...TAAGTTGGATGGATGTGAGTTAATTACTAGTTCCTTTAGCTTGAGGTCTAACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp CCCGCCGCTGCCGCGCCGCTTTGCTGTCGGCGGTCATaGAAGCCACGATCGGCGGGTACCGCGCGACGGGCG +
Preference number: 6 (lower is better)
Translates to: PAAAAPLCCRRS*KPRSAGTARRA
Trigger: CGCCCGTCGCGCGGTACCCGCCGATCGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp GCGTGCACCGTCGCCTGCCAGCGCTGCACCCGCCGCTaGCGCGCCGCTTTGCTGTCGGCGGTCATGGAAGCC +
Preference number: 6 (lower is better)
Translates to: ACTVACQRCTRR*RAALLSAVMEA
Trigger: GGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCACGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp GCCGGCGGCGCCGCACGTAGACCTGCTCCTGCAAGATaGAGTCGCACACGGCGGCGCGCAGGGCGGCGAGGT +
Preference number: 6 (lower is better)
Translates to: AGGAARRPAPAR*SRTRRRAGRRG
Trigger: ACCTCGCCGCCCTGCGCGCCGCCGTGTGCGACTGCATCTTGCAGGAGCAGGTCTACGTGCGGCGCCGCCGGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp TGCACCGTCGCCTGCCAGCGCTGCACCCGCCGCTGCCGCGCCGCTTaGCTGTCGGCGGTCATGGAAGCCACGATCGGCGGGTACCGCGCG +
Preference number: 6 (lower is better)
Translates to: CTVACQRCTRRCRAA*LSAVMEATIGGYRA
Trigger: CGCGCGGTACCCGCCGATCGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp CCTGCCAGCGCTGCACCCGCCGCTGCCGCGCCGCTTTaGTGTCGGCGGTCATGGAAGCCACGATCGGCGGGT +
Preference number: 6 (lower is better)
Translates to: PASAAPAAAAPL*CRRSWKPRSAG
Trigger: ACCCGCCGATCGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp CTCACTACCTGGTCCAGGATGGAGGAGGCGAGGGCCTaGCGACGATCGAAGAGGGAGCGGGGCCGGCGGCGC +
Preference number: 6 (lower is better)
Translates to: LTTWSRMEEARA*RRSKRERGRRR
Trigger: GCGCCGCCGGCCCCGCTCCCTCTTCGATCGTCGCCAGGCCCTCGCCTCCTCCATCCTGGACCAGGTAGTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp GGCGACAGCGCCGGGGCGGGCGGCAGGCCCGAGACAAACACGGTCTaGGTGAAGCTCTGGTACCAGCGGTCGGCGTTCAAGGCGGAGATC +
Preference number: 6 (lower is better)
Translates to: GDSAGAGGRPETNTV*VKLWYQRSAFKAEI
Trigger: GATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCCGCCCGCCCCGGCGCTGTCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 72 bp GGGCGGGCGGCAGGCCCGAGACAAACACGGTCTTGGTaGAGCTCTGGTACCAGCGGTCGGCGTTCAAGGCGG +
Preference number: 6 (lower is better)
Translates to: GRAAGPRQTRSW*SSGTSGRRSRR
Trigger: CCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCCGCCCGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp GCCGGGGCGGGCGGCAGGCCCGAGACAAACACGGTCTaGGTGAAGCTCTGGTACCAGCGGTCGGCGTTCAAG +
Preference number: 6 (lower is better)
Translates to: AGAGGRPETNTV*VKLWYQRSAFK
Trigger: CTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCCGCCCGCCCCGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp GCAGGTTCACGAGCGTCCTCACTACCTGGTCCAGGATaGAGGAGGCGAGGGCCTGGCGACGATCGAAGAGGG +
Preference number: 6 (lower is better)
Translates to: AGSRASSLPGPG*RRRGPGDDRRG
Trigger: CCCTCTTCGATCGTCGCCAGGCCCTCGCCTCCTCCATCCTGGACCAGGTAGTGAGGACGCTCGTGAACCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp AGTGGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTaGTCCAGGATGGAGGAGGCGAGGGCCTGGCGACGA +
Preference number: 6 (lower is better)
Translates to: SGASRFTSVLTT*SRMEEARAWRR
Trigger: TCGTCGCCAGGCCCTCGCCTCCTCCATCCTGGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp GGCAGGCCCGAGACAAACACGGTCTTGGTGAAGCTCTaGTACCAGCGGTCGGCGTTCAAGGCGGAGATCTGC +
Preference number: 6 (lower is better)
Translates to: GRPETNTVLVKL*YQRSAFKAEIC
Trigger: GCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGGCCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp ACAATCGAGAGCGGCAGTGCTCAGGACAGGGTTGAGTaGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTG +
Preference number: 6 (lower is better)
Translates to: TIESGSAQDRVE*SEQVHERPHYL
Trigger: CAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp TCAACAGAGCGTTTACAATCGAGAGCGGCAGTGCTCAGGACAGGGTaGAGTGGAGCGAGCAGGTTCACGAGCGTCCTCACTACCTGGTCC +
Preference number: 6 (lower is better)
Translates to: STERLQSRAAVLRTG*SGASRFTSVLTTWS
Trigger: GGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGTAAACGCTCTGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp CGTTTACAATCGAGAGCGGCAGTGCTCAGGACAGGGTaGAGTGGAGCGAGCAGGTTCACGAGCGTCCTCACT +
Preference number: 6 (lower is better)
Translates to: RLQSRAAVLRTG*SGASRFTSVLT
Trigger: AGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGTAAACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 72 bp GTTTACAATCGAGAGCGGCAGTGCTCAGGACAGGGTTaGGTGGAGCGAGCAGGTTCACGAGCGTCCTCACTA +
Preference number: 6 (lower is better)
Translates to: VYNRERQCSGQG*VERAGSRASSL
Trigger: TAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCCTGTCCTGAGCACTGCCGCTCTCGATTGTAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp CGGTCGGCGTTCAAGGCGGAGATCTGCGGATGCACCACGTACTTCTaGAACTGCATCTTGGTGAGAATCCGTATCTTCTCGTCCACCGAG +
Preference number: 6 (lower is better)
Translates to: RSAFKAEICGCTTYF*NCILVRIRIFSSTE
Trigger: CTCGGTGGACGAGAAGATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAACGCCGACCG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp TACCAGCGGTCGGCGTTCAAGGCGGAGATCTGCGGATaGACCACGTACTTCTTGAACTGCATCTTGGTGAGA +
Preference number: 6 (lower is better)
Translates to: YQRSAFKAEICG*TTYFLNCILVR
Trigger: TCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAACGCCGACCGCTGGTA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp GCGGAGATCTGCGGATGCACCACGTACTTCTTGAACTaGATCTTGGTGAGAATCCGTATCTTCTCGTCCACC +
Preference number: 6 (lower is better)
Translates to: AEICGCTTYFLN*ILVRIRIFSST
Trigger: GGTGGACGAGAAGATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp GATCACAGCCTGGGAGACAAAAGGTCGAGTAACATCTaGTTCGCTCCAGAACCCTTGGTACATAGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: DHSLGDKRSSNI*FAPEPLVHSLC
Trigger: GCACAAGCTATGTACCAAGGGTTCTGGAGCGAAGCAGATGTTACTCGACCTTTTGTCTCCCAGGCTGTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp TTCAAGGCGGAGATCTGCGGATGCACCACGTACTTCTaGAACTGCATCTTGGTGAGAATCCGTATCTTCTCG +
Preference number: 6 (lower is better)
Translates to: FKAEICGCTTYF*NCILVRIRIFS
Trigger: CGAGAAGATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGCATCCGCAGATCTCCGCCTTGAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp AACATCTGCTTCGCTCCAGAACCCTTGGTACATAGCTaGTGCTCCAGTCCAAGCAAAAAGACTTGCAATGGC +
Preference number: 6 (lower is better)
Translates to: NICFAPEPLVHS*CSSPSKKTCNG
Trigger: GCCATTGCAAGTCTTTTTGCTTGGACTGGAGCACAAGCTATGTACCAAGGGTTCTGGAGCGAAGCAGATGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp CAAGTTCCTTCTCCTGGCTTGCCAACAGCTGTGCTCCGTCTTCTCTaGGTTTATTTAGCAGAAAGTGAACTATCTGCAGGAGAGTACCAT +
Preference number: 6 (lower is better)
Translates to: QVPSPGLPTAVLRLL*VYLAESELSAGEYH
Trigger: ATGGTACTCTCCTGCAGATAGTTCACTTTCTGCTAAATAAACCAAGAGAAGACGGAGCACAGCTGTTGGCAAGCCAGGAGAAGGAACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp CTTGCAATGGCATTAGCTCTGAAGACAGCTTCTACCTaGTCAGCTTGGTTCTGTCTTATCAGTCTCTCTCTC +
Preference number: 6 (lower is better)
Translates to: LAMALALKTAST*SAWFCLISLSL
Trigger: GAGAGAGAGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCCATTGCAAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp ATCTGCTTCGCTCCAGAACCCTTGGTACATAGCTTGTaGTCCAGTCCAAGCAAAAAGACTTGCAATGGCATT +
Preference number: 6 (lower is better)
Translates to: ICFAPEPLVHSL*SSPSKKTCNGI
Trigger: AATGCCATTGCAAGTCTTTTTGCTTGGACTGGAGCACAAGCTATGTACCAAGGGTTCTGGAGCGAAGCAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp GGCATTAGCTCTGAAGACAGCTTCTACCTGCTCAGCTaGGTTCTGTCTTATCAGTCTCTCTCTCTTCAGTCT +
Preference number: 6 (lower is better)
Translates to: GISSEDSFYLLS*VLSYQSLSLQS
Trigger: AGACTGAAGAGAGAGAGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp ACTTGCAATGGCATTAGCTCTGAAGACAGCTTCTACCTGCTCAGCTaGGTTCTGTCTTATCAGTCTCTCTCTCTTCAGTCTGTCAGGTAT +
Preference number: 6 (lower is better)
Translates to: TCNGISSEDSFYLLS*VLSYQSLSLQSVRY
Trigger: ATACCTGACAGACTGAAGAGAGAGAGACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCCATTGCAAGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS TCA 72 bp ATTTGGTATCGTAAAGCATCAATATGGCCTTTTCGATaGCCAGCAGGAATGCGTTCTTCACCACGCAACCAG +
Preference number: 6 (lower is better)
Translates to: IWYRKASIWPFR*PAGMRSSPRNQ
Trigger: CTGGTTGCGTGGTGAAGAACGCATTCCTGCTGGTCATCGAAAAGGCCATATTGATGCTTTACGATACCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp AAGCATCAATATGGCCTTTTCGATGACCAGCAGGAATaGGTTCTTCACCACGCAACCAGTAAAAGTCAACAG +
Preference number: 6 (lower is better)
Translates to: KHQYGLFDDQQE*VLHHATSKSQQ
Trigger: CTGTTGACTTTTACTGGTTGCGTGGTGAAGAACGCATTCCTGCTGGTCATCGAAAAGGCCATATTGATGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp AGGGATGGAGTAATCCAATGGCACAAACTCTGGGAGTaGCTTAGATATTCGAATCTGGTTGTGTGGTTTGTC +
Preference number: 6 (lower is better)
Translates to: RDGVIQWHKLWE*LRYSNLVVWFV
Trigger: GACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTGGATTACTCCATCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp CATCACAGGGATTTCTGTAGGGATGGAGTAATCCAATaGCACAAACTCTGGGAGTTGCTTAGATATTCGAAT +
Preference number: 6 (lower is better)
Translates to: HHRDFCRDGVIQ*HKLWELLRYSN
Trigger: ATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTGGATTACTCCATCCCTACAGAAATCCCTGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp TCCAATGGCACAAACTCTGGGAGTTGCTTAGATATTCGAATCTGGTaGTGTGGTTTGTCATTTATTTGGTATCGTAAAGCATCAATATGG +
Preference number: 6 (lower is better)
Translates to: SNGTNSGSCLDIRIW*CGLSFIWYRKASIW
Trigger: CCATATTGATGCTTTACGATACCAAATAAATGACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS GCA 72 bp GCTGTTTTTGAGCCAGTAAATATACTGTTTTCATACTaGCGTCTGAACAATGGAAGCTTGTCTGGTTTACAT +
Preference number: 6 (lower is better)
Translates to: AVFEPVNILFSY*RLNNGSLSGLH
Trigger: ATGTAAACCAGACAAGCTTCCATTGTTCAGACGGCAGTATGAAAACAGTATATTTACTGGCTCAAAAACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CCA 72 bp GGCACAAACTCTGGGAGTTGCTTAGATATTCGAATCTaGTTGTGTGGTTTGTCATTTATTTGGTATCGTAAA +
Preference number: 6 (lower is better)
Translates to: GTNSGSCLDIRI*LCGLSFIWYRK
Trigger: TTTACGATACCAAATAAATGACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 90 bp ACAAACTCTGGGAGTTGCTTAGATATTCGAATCTGGTTGTGTGGTTaGTCATTTATTTGGTATCGTAAAGCATCAATATGGCCTTTTCGA +
Preference number: 6 (lower is better)
Translates to: TNSGSCLDIRIWLCG*SFIWYRKASIWPFR
Trigger: TCGAAAAGGCCATATTGATGCTTTACGATACCAAATAAATGACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp GGGAGTTGCTTAGATATTCGAATCTGGTTGTGTGGTTaGTCATTTATTTGGTATCGTAAAGCATCAATATGG +
Preference number: 6 (lower is better)
Translates to: GSCLDIRIWLCG*SFIWYRKASIW
Trigger: CCATATTGATGCTTTACGATACCAAATAAATGACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10
CDS CAA 72 bp ACAAACTCTGGGAGTTGCTTAGATATTCGAATCTGGTaGTGTGGTTTGTCATTTATTTGGTATCGTAAAGCA +
Preference number: 6 (lower is better)
Translates to: TNSGSCLDIRIW*CGLSFIWYRKA
Trigger: TGCTTTACGATACCAAATAAATGACAAACCACACAACCAGATTCGAATATCTAAGCAACTCCCAGAGTTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022245.10