Pregenerated sensors for MRPS28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040269Ensembl transcript IDs: ENSMUST00000042148.6
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCGCAGCCGGACCCTGGTaGCCCTCTGGTATTTCTCGC | + |
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Preference number: 4 (lower is better) Translates to: FIYSFLGSKWVQIQQAQSAAGPW*PSGISR Trigger: GCGAGAAATACCAGAGGGGCACCAGGGTCCGGCTGC...GGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR CCA 90 bp | TTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCAGACGCAGCCGGACCCTaGTGCCCCTCTGGTATTTCT | + |
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Preference number: 4 (lower is better) Translates to: LFIVFWAQNGFKYSKRSPDAAGP*CPSGIS Trigger: AGAAATACCAGAGGGGCACCAGGGTCCGGCTGCGTC...TGGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR CCA 90 bp | TTTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCGAGAGTGTCTCAGCATaGAGGCGAAGGACTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: FIYSFLGSKWVQIQQAQSESVSA*RRRTPQ Trigger: CTGTGGAGTCCTTCGCCTCCATGCTGAGACACTCTC...GGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR TCA 90 bp | TTTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCCTTTTACACACACAGTaGAACTTGCCACCAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: FIYSFLGSKWVQIQQAQSLLHTQ*NLPPKS Trigger: AGATTTTGGTGGCAAGTTTCACTGTGTGTGTAAAAG...GGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS TCA 90 bp | CCGCTGCAAGTCCGAGTGTCGCTCCAGAGCGCTCGCGAAGCCGCCTaGACGCGCCCGAGGAGCGGAGGAGTCGTGGGTTGCGCTCTCGGA | + |
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Preference number: 5 (lower is better) Translates to: PLQVRVSLQSAREAA*TRPRSGGVVGCALG Trigger: TCCGAGAGCGCAACCCACGACTCCTCCGCTCCTCGGGCGCGTTCAGGCGGCTTCGCGAGCGCTCTGGAGCGACACTCGGACTTGCAGCGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS GCA 90 bp | GACTCCACAGGTTTTGGAGACTCCAGTCGGAGCTCCGCCTTCCGCTaGAAGTCCGAGTGTCGCTCCAGAGCGCTCGCGAAGCCGCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: DSTGFGDSSRSSAFR*KSECRSRALAKPPE Trigger: TTCAGGCGGCTTCGCGAGCGCTCTGGAGCGACACTCGGACTTGCAGCGGAAGGCGGAGCTCCGACTGGAGTCTCCAAAACCTGTGGAGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 90 bp | GCGCCCGATGACCAGTTTGTCCTTGGCAGGCCCCAGCTGGGTCAGTaGAGAGTGTCTCAGCATGGAGGCGAAGGACTCCACAGGTTTTGG | + |
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Preference number: 5 (lower is better) Translates to: APDDQFVLGRPQLGQ*RVSQHGGEGLHRFW Trigger: CCAAAACCTGTGGAGTCCTTCGCCTCCATGCTGAGACACTCTCCACTGACCCAGCTGGGGCCTGCCAAGGACAAACTGGTCATCGGGCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR CAA 90 bp | TTTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCATGACCAGTTTGTCCTaGGCAGGCCCCAGCTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: FIYSFLGSKWVQIQQAQSMTSLS*AGPSWV Trigger: GACCCAGCTGGGGCCTGCCAAGGACAAACTGGTCAT...GGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 90 bp | TACTTGCTGGGTTGCTCCTCTCTTGATTTTGAGTCCCTGATCTCTTaGAGTCCTAAGAGAACTGCATCAGCCTCCAGTATAGTTGTATCT | + |
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Preference number: 5 (lower is better) Translates to: YLLGCSSLDFESLIS*SPKRTASASSIVVS Trigger: AGATACAACTATACTGGAGGCTGATGCAGTTCTCTTAGGACTCCAAGAGATCAGGGACTCAAAATCAAGAGAGGAGCAACCCAGCAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR CAA 90 bp | TTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCAAGGACTCCACAGGTTTaGGAGACTCCAGTCGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: LFIVFWAQNGFKYSKRSPRTPQV*ETPVGA Trigger: AGCTCCGACTGGAGTCTCCAAAACCTGTGGAGTCCT...TGGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS-3UTR CAA 90 bp | TTTATTTATAGTTTTCTGGGCTCAAAATGGGTTCAAATACAGCAAGCGCAGTCCGCATTTCGCAAAGGCTaGGAGAAGACAAGCGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: FIYSFLGSKWVQIQQAQSAFRKG*EKTSAL Trigger: GAGAGCGCTTGTCTTCTCCAAGCCTTTGCGAAATGC...GGACTGCGCTTGCTGTATTTGAACCCATTTTGAGCCCAGAAAACTATAAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS GCA 90 bp | ATTTCTCGCCATCCACATCTGGTCTTTTACACACACAGTGAAACTTaGCACCAAAATCTATGTAGAGATCGTCCTCCACGATATGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: ISRHPHLVFYTHSET*HQNLCRDRPPRYGR Trigger: TCTTCCATATCGTGGAGGACGATCTCTACATAGATTTTGGTGGCAAGTTTCACTGTGTGTGTAAAAGACCAGATGTGGATGGCGAGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS TCA 72 bp | GTCCGAGTGTCGCTCCAGAGCGCTCGCGAAGCCGCCTaGACGCGCCCGAGGAGCGGAGGAGTCGTGGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: VRVSLQSAREAA*TRPRSGGVVGC Trigger: GCAACCCACGACTCCTCCGCTCCTCGGGCGCGTTCAGGCGGCTTCGCGAGCGCTCTGGAGCGACACTCGGAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CAA 72 bp | CGCCTGAACGCGCCCGAGGAGCGGAGGAGTCGTGGGTaGCGCTCTCGGAACCACTCTCCGTGCTTGCATTTC | + |
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Preference number: 6 (lower is better) Translates to: RLNAPEERRSRG*RSRNHSPCLHF Trigger: GAAATGCAAGCACGGAGAGTGGTTCCGAGAGCGCAACCCACGACTCCTCCGCTCCTCGGGCGCGTTCAGGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS GCA 72 bp | GGTTTTGGAGACTCCAGTCGGAGCTCCGCCTTCCGCTaGAAGTCCGAGTGTCGCTCCAGAGCGCTCGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: GFGDSSRSSAFR*KSECRSRALAK Trigger: CTTCGCGAGCGCTCTGGAGCGACACTCGGACTTGCAGCGGAAGGCGGAGCTCCGACTGGAGTCTCCAAAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 72 bp | CGCCCGATGACCAGTTTGTCCTTGGCAGGCCCCAGCTaGGTCAGTGGAGAGTGTCTCAGCATGGAGGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: RPMTSLSLAGPS*VSGECLSMEAK Trigger: CTTCGCCTCCATGCTGAGACACTCTCCACTGACCCAGCTGGGGCCTGCCAAGGACAAACTGGTCATCGGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 72 bp | GACCAGTTTGTCCTTGGCAGGCCCCAGCTGGGTCAGTaGAGAGTGTCTCAGCATGGAGGCGAAGGACTCCAC | + |
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Preference number: 6 (lower is better) Translates to: DQFVLGRPQLGQ*RVSQHGGEGLH Trigger: GTGGAGTCCTTCGCCTCCATGCTGAGACACTCTCCACTGACCCAGCTGGGGCCTGCCAAGGACAAACTGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS GCA 72 bp | TCAGCTCAAGATCCAGGAGACGCAGCCGGACCCTGGTaGCCCTCTGGTATTTCTCGCCATCCACATCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SAQDPGDAAGPW*PSGISRHPHLV Trigger: GACCAGATGTGGATGGCGAGAAATACCAGAGGGGCACCAGGGTCCGGCTGCGTCTCCTGGATCTTGAGCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 72 bp | GTGTCTCAGCATGGAGGCGAAGGACTCCACAGGTTTTaGAGACTCCAGTCGGAGCTCCGCCTTCCGCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: VSQHGGEGLHRF*RLQSELRLPLQ Trigger: TTGCAGCGGAAGGCGGAGCTCCGACTGGAGTCTCCAAAACCTGTGGAGTCCTTCGCCTCCATGCTGAGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CAA 72 bp | AGTGTCTCAGCATGGAGGCGAAGGACTCCACAGGTTTaGGAGACTCCAGTCGGAGCTCCGCCTTCCGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SVSAWRRRTPQV*ETPVGAPPSAA Trigger: TGCAGCGGAAGGCGGAGCTCCGACTGGAGTCTCCAAAACCTGTGGAGTCCTTCGCCTCCATGCTGAGACACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CCA 72 bp | ATGTCAGCTCAAGATCCAGGAGACGCAGCCGGACCCTaGTGCCCCTCTGGTATTTCTCGCCATCCACATCTG | + |
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Preference number: 6 (lower is better) Translates to: MSAQDPGDAAGP*CPSGISRHPHL Trigger: CAGATGTGGATGGCGAGAAATACCAGAGGGGCACCAGGGTCCGGCTGCGTCTCCTGGATCTTGAGCTGACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS CAA 72 bp | ACGATATGGAAGATGCGCCCGATGACCAGTTTGTCCTaGGCAGGCCCCAGCTGGGTCAGTGGAGAGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: TIWKMRPMTSLS*AGPSWVSGECL Trigger: GAGACACTCTCCACTGACCCAGCTGGGGCCTGCCAAGGACAAACTGGTCATCGGGCGCATCTTCCATATCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS TCA 72 bp | ACTTGCTGGGTTGCTCCTCTCTTGATTTTGAGTCCCTaGTCTCTTGGAGTCCTAAGAGAACTGCATCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: TCWVAPLLILSP*SLGVLRELHQP Trigger: AGGCTGATGCAGTTCTCTTAGGACTCCAAGAGATCAGGGACTCAAAATCAAGAGAGGAGCAACCCAGCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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| CDS GCA 72 bp | CATCCACATCTGGTCTTTTACACACACAGTGAAACTTaGCACCAAAATCTATGTAGAGATCGTCCTCCACGA | + |
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Preference number: 6 (lower is better) Translates to: HPHLVFYTHSET*HQNLCRDRPPR Trigger: TCGTGGAGGACGATCTCTACATAGATTTTGGTGGCAAGTTTCACTGTGTGTGTAAAAGACCAGATGTGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042148.6 |
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