Pregenerated sensors for MRPS23 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023723Ensembl transcript IDs: ENSMUST00000024486.14, ENSMUST00000107915.10, ENSMUST00000118784.8, ENSMUST00000139170.8, ENSMUST00000144070.3
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCAGACACGGCCGAGGGACCGGACCTTGTGGCCAAGTAGGATTCTaGGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: RRHGRGTGPCGQVGF*GIQTRSPKSSDAGS Trigger: GCTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACTTGGCCACAAGGTCCGGTCCCTCGGCCGTGTCTGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CCA 90 bp | CTTCGTCCACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTaGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: LRPHQTGTRSYCSRS*LCLCCACQDAVNSS Trigger: AGAGCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTGGACGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR GCA 90 bp | CCACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTaGCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCTCTACAGAA | + |
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Preference number: 1 (lower is better) Translates to: PHQTGTRSYCSRSWL*LCCACQDAVNSSTE Trigger: TTCTGTAGAGCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGCCCAAGGCCAGCACAAGGGAAGGCACACGTGCCTaGGAGATGGAGGCCATCAGA | + |
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Preference number: 2 (lower is better) Translates to: PDEKPKEFRCRQPKASTREGTRA*EMEAIR Trigger: TCTGATGGCCTCCATCTCTCAGGCACGTGTGCCTTC...CCTTGTGCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR GCA 90 bp | TGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCCCCAAAGAGTTCAGATaGCGGCAGCCCAAGGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: CSRSWLCLCCACQDAVNSPKEFR*RQPKAS Trigger: GCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGG...GCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR TCA 90 bp | TGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCGAAGGCACACGTGCCTaGGAGATGGAGGCCATCAGA | + |
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Preference number: 2 (lower is better) Translates to: CSRSWLCLCCACQDAVNSEGTRA*EMEAIR Trigger: TCTGATGGCCTCCATCTCTCAGGCACGTGTGCCTTC...GCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACACCCAAAGAGTTCAGATaGCGGCAGCCCAAGGCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: TAAGVGCASAVPVRMQSTPKEFR*RQPKAS Trigger: GCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGG...TGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CAA 90 bp | TCTTCGTCCACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTaGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: SSSTSNRHSVLLQQE*AVPLLCLSGCSQQL Trigger: GAGCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTGGACGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAAAGAGAAGGCACACGTaGCTGAGAGATGGAGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: TAAGVGCASAVPVRMQSTKRRHT*LRDGGH Trigger: ATGGCCTCCATCTCTCAGGCACGTGTGCCTTCTCTT...TGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR GCA 90 bp | AGTAGGATTCTGAGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGAAGAGAAGGCACACGTaGCTGAGAGATGGAGGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: SRILRDPDEKPKEFRCRQKRRHT*LRDGGH Trigger: ATGGCCTCCATCTCTCAGGCACGTGTGCCTTCTCTT...CTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCAAAGAGTTCAGATGCCGGCAGCCCAAGGCCAGCACAAGGCACCTTTAAAGAAAAGTTCACAAAGCTaGTGCTTTCAAACCACAGTA | + |
|
Preference number: 2 (lower is better) Translates to: AQRVQMPAAQGQHKAPLKKSSQS*CFQTTV Trigger: TACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT...CTTTAAAGGTGCCTTGTGCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCTCCCTTTAAAGGCTTCCTaGTGTTATTTACAGTTTCAA | + |
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Preference number: 2 (lower is better) Translates to: QQELAVPLLCLSGCSQQLPLKAS*CYLQFQ Trigger: TTGAAACTGTAAATAACACCAGGAAGCCTTTAAAGG...GAGCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR CCA 90 bp | CACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTAAAAGTTCACAAAGCTaGTGCTTTCAAACCACAGTA | + |
|
Preference number: 2 (lower is better) Translates to: HIKQALGLTAAGVGCASAKSSQS*CFQTTV Trigger: TACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT...AGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR-3UTR TCA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCGAAGGCACACGTGCCTaGGAGATGGAGGCCATCAGA | + |
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Preference number: 2 (lower is better) Translates to: KSSQSWCFQTTVLRFITSEGTRA*EMEAIR Trigger: TCTGATGGCCTCCATCTCTCAGGCACGTGTGCCTTC...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCAAGAGAAGGCACACGTaGCTGAGAGATGGAGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: KSSQSWCFQTTVLRFITSKRRHT*LRDGGH Trigger: ATGGCCTCCATCTCTCAGGCACGTGTGCCTTCTCTT...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| 3UTR-3UTR GCA 90 bp | GGAAAACGTCAGTCTTTAGCTAGGTGTGGTCATTTATTCAGTCACCAAACAATTCTGTGCCTGTCAGGATaGAGTCAACAGCTCTACAGA | + |
|
Preference number: 2 (lower is better) Translates to: GKRQSLARCGHLFSHQTILCLSG*SQQLYR Trigger: TCTGTAGAGCTGTTGACTGCATCCTGACAGGCACAG...AATTGTTTGGTGACTGAATAAATGACCACACCTAGCTAAAGACTGACGTTTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR GCA 72 bp | ACAGGCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTaGCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGC | + |
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Preference number: 3 (lower is better) Translates to: TGTRSYCSRSWL*LCCACQDAVNS Trigger: GCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CCA 72 bp | ACACAAGGAAGCAGTACCAGGGCGGCAGGATGTTTGTaGGGAAGACCACCTGAATCAGACCCCTACCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: TQGSSTRAAGCL*GRPPESDPYPC Trigger: GCAGGGGTAGGGGTCTGATTCAGGTGGTCTTCCCCACAAACATCCTGCCGCCCTGGTACTGCTTCCTTGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR TCA 72 bp | GGCCGAGGGACCGGACCTTGTGGCCAAGTAGGATTCTaGGGGATCCAGACGAGAAGCCCAAAGAGTTCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: GRGTGPCGQVGF*GIQTRSPKSSD Trigger: ATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACTTGGCCACAAGGTCCGGTCCCTCGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CCA 72 bp | CATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTaGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTC | + |
|
Preference number: 3 (lower is better) Translates to: HQTGTRSYCSRS*LCLCCACQDAV Trigger: GACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR GCA 72 bp | ACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTaGTGTGCCTGTCAGGATGCAGTCAACAGCTCTACA | + |
|
Preference number: 3 (lower is better) Translates to: TRSYCSRSWLCL*CACQDAVNSST Trigger: TGTAGAGCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR GCA 90 bp | CCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGCCCAAGGCCAGCACAAGGGCTGTTTCTGGCTCCTaGTTCACCTGCCCCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PDEKPKEFRCRQPKASTRAVSGS*FTCPRC Trigger: GCAGCGGGGGCAGGTGAAGCAGGAGCCAGAAACAGC...CCTTGTGCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR GCA 90 bp | AGTAGGATTCTGAGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGGCTGTTTCTGGCTCCTaGTTCACCTGCCCCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SRILRDPDEKPKEFRCRQAVSGS*FTCPRC Trigger: GCAGCGGGGGCAGGTGAAGCAGGAGCCAGAAACAGC...CTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR CCA 90 bp | CCAAGTAGGATTCTGAGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGGGACGGGGCTGTTTCTaGCTCCTGCTTCACCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: PSRILRDPDEKPKEFRCRGRGCF*LLLHLP Trigger: GGGCAGGTGAAGCAGGAGCCAGAAACAGCCCCGTCC...CCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CAA 72 bp | ACAACACAAGGAAGCAGTACCAGGGCGGCAGGATGTTaGTGGGGAAGACCACCTGAATCAGACCCCTACCCC | + |
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Preference number: 4 (lower is better) Translates to: TTQGSSTRAAGC*WGRPPESDPYP Trigger: GGGGTAGGGGTCTGATTCAGGTGGTCTTCCCCACAAACATCCTGCCGCCCTGGTACTGCTTCCTTGTGTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR CCA 90 bp | GCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGAGGCTCTCTCAGGGGTaGAAAGGCCTTATATATGTC | + |
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Preference number: 4 (lower is better) Translates to: ALGLTAAGVGCASAVPVRRLSQG*KGLIYV Trigger: GACATATATAAGGCCTTTCCACCCCTGAGAGAGCCT...CCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| 3UTR CAA 72 bp | ACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTaGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TSNRHSVLLQQE*AVPLLCLSGCS Trigger: ACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR TCA 90 bp | CCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGCCCAAGGCCAGCACAAGGTTCTCCACAAACCGCTaGCAGGTAGACTTGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: PDEKPKEFRCRQPKASTRFSTNR*QVDLKF Trigger: AAACTTCAAGTCTACCTGTCAGCGGTTTGTGGAGAA...CCTTGTGCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR CCA 90 bp | GCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGTATGTCATACCACAGTaGCTTCTCTTTCAACACCCC | + |
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Preference number: 4 (lower is better) Translates to: ALGLTAAGVGCASAVPVRYVIPQ*LLFQHP Trigger: GGGGTGTTGAAAGAGAAGCCACTGTGGTATGACATA...CCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR CCA 90 bp | TGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGATGCAGTCAACAGCTATGTCATACCACAGTaGCTTCTCTTTCAACACCCC | + |
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Preference number: 4 (lower is better) Translates to: CSRSWLCLCCACQDAVNSYVIPQ*LLFQHP Trigger: GGGGTGTTGAAAGAGAAGCCACTGTGGTATGACATA...GCTGTTGACTGCATCCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR GCA 90 bp | GCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGTGCCTGTCAGGACCAGATCCATAGGTTaGAAAGAATTTCGCTCGAAT | + |
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Preference number: 4 (lower is better) Translates to: ALGLTAAGVGCASAVPVRTRSIG*KEFRSN Trigger: ATTCGAGCGAAATTCTTTGCAACCTATGGATCTGGT...CCTGACAGGCACAGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR CCA 90 bp | CACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTAGGCTCTCTCAGGGGTaGAAAGGCCTTATATATGTC | + |
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Preference number: 4 (lower is better) Translates to: HIKQALGLTAAGVGCASARLSQG*KGLIYV Trigger: GACATATATAAGGCCTTTCCACCCCTGAGAGAGCCT...AGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR TCA 90 bp | AGTAGGATTCTGAGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGTTCTCCACAAACCGCTaGCAGGTAGACTTGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: SRILRDPDEKPKEFRCRQFSTNR*QVDLKF Trigger: AAACTTCAAGTCTACCTGTCAGCGGTTTGTGGAGAA...CTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR TCA 90 bp | CACATCAAACAGGCACTCGGTCTTACTGCAGCAGGAGTTGGCTGTGCCTCTGCTGAACTCTTCTTAAAATaGTGCCTTCTGCCAACAGAG | + |
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Preference number: 4 (lower is better) Translates to: HIKQALGLTAAGVGCASAELFLK*CLLPTE Trigger: CTCTGTTGGCAGAAGGCATCATTTTAAGAAGAGTTC...AGCAGAGGCACAGCCAACTCCTGCTGCAGTAAGACCGAGTGCCTGTTTGATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR GCA 90 bp | GCCCAAAGAGTTCAGATGCCGGCAGCCCAAGGCCAGCACAAGGCACCTTTAAAGACCAGATCCATAGGTTaGAAAGAATTTCGCTCGAAT | + |
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Preference number: 4 (lower is better) Translates to: AQRVQMPAAQGQHKAPLKTRSIG*KEFRSN Trigger: ATTCGAGCGAAATTCTTTGCAACCTATGGATCTGGT...CTTTAAAGGTGCCTTGTGCTGGCCTTGGGCTGCCGGCATCTGAACTCTTTGGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR TCA 90 bp | AGTAGGATTCTGAGGGATCCAGACGAGAAGCCCAAAGAGTTCAGATGCCGGCAGGAACTCTTCTTAAAATaGTGCCTTCTGCCAACAGAG | + |
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Preference number: 4 (lower is better) Translates to: SRILRDPDEKPKEFRCRQELFLK*CLLPTE Trigger: CTCTGTTGGCAGAAGGCATCATTTTAAGAAGAGTTC...CTGCCGGCATCTGAACTCTTTGGGCTTCTCGTCTGGATCCCTCAGAATCCTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 |
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| CDS-3UTR GCA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCGCTGTTTCTGGCTCCTaGTTCACCTGCCCCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KSSQSWCFQTTVLRFITSAVSGS*FTCPRC Trigger: GCAGCGGGGGCAGGTGAAGCAGGAGCCAGAAACAGC...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| CDS-3UTR TCA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCTTCTCCACAAACCGCTaGCAGGTAGACTTGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: KSSQSWCFQTTVLRFITSFSTNR*QVDLKF Trigger: AAACTTCAAGTCTACCTGTCAGCGGTTTGTGGAGAA...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| CDS-3UTR GCA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCACCAGATCCATAGGTTaGAAAGAATTTCCGGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: KSSQSWCFQTTVLRFITSTRSIG*KEFPGE Trigger: TTCTCCCGGAAATTCTTTGCAACCTATGGATCTGGT...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144070.3 |
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| CDS TCA 90 bp | GGCTCCTGCTTCACCTGCCCCCGCTGCGCCAGGTCATCGTCTTCCTaGGGCTCATGTCCTTCTGATGAAGCTTGGAGTCTCACGCTGACA | + |
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Preference number: 5 (lower is better) Translates to: GSCFTCPRCARSSSS*GSCPSDEAWSLTLT Trigger: TGTCAGCGTGAGACTCCAAGCTTCATCAGAAGGACATGAGCCTCAGGAAGACGATGACCTGGCGCAGCGGGGGCAGGTGAAGCAGGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| CDS GCA 90 bp | TCTGATCCTCCTGGTAAAAGATGTCCTGGATGTCAGCTTTGGCTTTaGCGTATCGCAAGCGGGGCCTTCGGAAGACAGGCTCTCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SDPPGKRCPGCQLWL*RIASGAFGRQALSG Trigger: CCCTGAGAGAGCCTGTCTTCCGAAGGCCCCGCTTGCGATACGGCAAAGCCAAAGCTGACATCCAGGACATCTTTTACCAGGAGGATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 ENSMUST00000118784.8 ENSMUST00000139170.8 |
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| CDS CCA 90 bp | AGGCTCTCTCAGGGGTGGAAAGGCCTTATATATGTCATACCACAGTaGCTTCTCTTTCAACACCCCGGCCCGCATCAGATCCCTCGTCCG | + |
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Preference number: 5 (lower is better) Translates to: RLSQGWKGLIYVIPQ*LLFQHPGPHQIPRP Trigger: CGGACGAGGGATCTGATGCGGGCCGGGGTGTTGAAAGAGAAGCCACTGTGGTATGACATATATAAGGCCTTTCCACCCCTGAGAGAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 |
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| CDS CCA 90 bp | GCCGTATCGCAAGCGGGGCCTTCGGAAGACAGGCTCTCTCAGGGGTaGAAAGGCCTTATATATGTCATACCACAGTGGCTTCTCTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: AVSQAGPSEDRLSQG*KGLIYVIPQWLLFQ Trigger: TTGAAAGAGAAGCCACTGTGGTATGACATATATAAGGCCTTTCCACCCCTGAGAGAGCCTGTCTTCCGAAGGCCCCGCTTGCGATACGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 ENSMUST00000118784.8 ENSMUST00000139170.8 |
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| CDS-3UTR CAA 90 bp | AAAAGTTCACAAAGCTGGTGCTTTCAAACCACAGTACTGAGATTCATAACATCCGACCAGATCCATAGGTaGCAAAGAATTTCCGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: KSSQSWCFQTTVLRFITSDQIHR*QRISGR Trigger: TCTCCCGGAAATTCTTTGCAACCTATGGATCTGGTC...GGATGTTATGAATCTCAGTACTGTGGTTTGAAAGCACCAGCTTTGTGAACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144070.3 |
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| CDS TCA 72 bp | TTCACCTGCCCCCGCTGCGCCAGGTCATCGTCTTCCTaGGGCTCATGTCCTTCTGATGAAGCTTGGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: FTCPRCARSSSS*GSCPSDEAWSL Trigger: GAGACTCCAAGCTTCATCAGAAGGACATGAGCCTCAGGAAGACGATGACCTGGCGCAGCGGGGGCAGGTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024486.14 ENSMUST00000118784.8 ENSMUST00000144070.3 |
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| CDS GCA 72 bp | CCTGGTAAAAGATGTCCTGGATGTCAGCTTTGGCTTTaGCGTATCGCAAGCGGGGCCTTCGGAAGACAGGCT | + |
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Preference number: 6 (lower is better) Translates to: PGKRCPGCQLWL*RIASGAFGRQA Trigger: AGCCTGTCTTCCGAAGGCCCCGCTTGCGATACGGCAAAGCCAAAGCTGACATCCAGGACATCTTTTACCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 ENSMUST00000118784.8 ENSMUST00000139170.8 |
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| CDS CCA 72 bp | GATCCTCCTGGTAAAAGATGTCCTGGATGTCAGCTTTaGCTTTGCCGTATCGCAAGCGGGGCCTTCGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: DPPGKRCPGCQL*LCRIASGAFGR Trigger: TCTTCCGAAGGCCCCGCTTGCGATACGGCAAAGCCAAAGCTGACATCCAGGACATCTTTTACCAGGAGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 ENSMUST00000118784.8 ENSMUST00000139170.8 |
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| CDS CCA 72 bp | CAGGGGTGGAAAGGCCTTATATATGTCATACCACAGTaGCTTCTCTTTCAACACCCCGGCCCGCATCAGATC | + |
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Preference number: 6 (lower is better) Translates to: QGWKGLIYVIPQ*LLFQHPGPHQI Trigger: GATCTGATGCGGGCCGGGGTGTTGAAAGAGAAGCCACTGTGGTATGACATATATAAGGCCTTTCCACCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024486.14 ENSMUST00000107915.10 |
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