Pregenerated sensors for MRPS18C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016833Ensembl transcript IDs: ENSMUST00000016977.15, ENSMUST00000112898.8, ENSMUST00000112901.2, ENSMUST00000198453.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAATTTTGCATGACCAATGGCCTCTCTTTCCACTaGTGGCCGACTAGGCCATTT | + |
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Preference number: 2 (lower is better) Translates to: FLALAFPCTEAYKFCMTNGLSFH*WPTRPF Trigger: AAATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCC...ATTGGTCATGCAAAATTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| 3UTR-3UTR CCA 90 bp | CCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAACACTTAGAGGTTTATTaGCAGGAACTTCACAAATAC | + |
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Preference number: 2 (lower is better) Translates to: PTHSHFLALAFPCTEAYKHLEVY*QELHKY Trigger: GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTG...TTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| 3UTR GCA 72 bp | GCCCTGGCGTTCCCCTGTACTGAGGCATATAAATTTTaGATGACCAATGGGCCTCTCTTTCCACTGATGGCC | + |
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Preference number: 3 (lower is better) Translates to: ALAFPCTEAYKF*MTNGPLFPLMA Trigger: GGCCATCAGTGGAAAGAGAGGCCCATTGGTCATGCAAAATTTATATGCCTCAGTACAGGGGAACGCCAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| 3UTR-3UTR CAA 90 bp | CCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAACGACTAGGCCATTTTTaGATTCATATGCAGCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: PTHSHFLALAFPCTEAYKRLGHF*IHMQLE Trigger: CTCTAGCTGCATATGAATCAAAAAATGGCCTAGTCG...TTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| CDS-3UTR TCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACTTGGGACTGGCTGCTTaGGTTCCGCGATCCGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYLGLAA*VPRSVK Trigger: CTTCACGGATCGCGGAACTCAAGCAGCCAGTCCCAA...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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| CDS-3UTR GCA 90 bp | TTCCCCTGTACTGAGGCATATAAATTTTGCATGACCAATGGGCCTCTCTTTCCATCCTCCCTATACCACTaGACAGAGCAACCAGAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FPCTEAYKFCMTNGPLFPSSLYH*TEQPER Trigger: CCGCTCTGGTTGCTCTGTGCAGTGGTATAGGGAGGA...TGGAAAGAGAGGCCCATTGGTCATGCAAAATTTATATGCCTCAGTACAGGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| CDS-3UTR CCA 90 bp | CCCTGTACTGAGGCATATAAATTTTGCATGACCAATGGGCCTCTCTTTCCACTGGTTCTCCATTGGGACTaGCAGGTCCTCATTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PCTEAYKFCMTNGPLFPLVLHWD*QVLIAG Trigger: ACCAGCAATGAGGACCTGCCAGTCCCAATGGAGAAC...CAGTGGAAAGAGAGGCCCATTGGTCATGCAAAATTTATATGCCTCAGTACAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| CDS-3UTR GCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACTCCTCCCTATACCACTaGACAGAGCAACCAGAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYSSLYH*TEQPER Trigger: CCGCTCTGGTTGCTCTGTGCAGTGGTATAGGGAGGA...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016977.15 ENSMUST00000112901.2 ENSMUST00000198453.2 |
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| CDS-3UTR CCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACGTTCTCCATTGGGACTaGCAGGTCCTCATTGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYVLHWD*QVLIAG Trigger: ACCAGCAATGAGGACCTGCCAGTCCCAATGGAGAAC...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016977.15 ENSMUST00000112901.2 |
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| CDS-3UTR CCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACGTAGGGGTTCTCCATTaGGACTGGCAGGTCCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYVGVLH*DWQVLI Trigger: AATGAGGACCTGCCAGTCCCAATGGAGAACCCCTAC...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016977.15 ENSMUST00000112901.2 |
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| CDS-3UTR CCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACGTAGGGGTTCTCCATTaGGACTGGCTGCTTGAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYVGVLH*DWLLEF Trigger: GAACTCAAGCAGCCAGTCCCAATGGAGAACCCCTAC...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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| CDS-3UTR GCA 90 bp | TTCCCCTGTACTGAGGCATATAAATTTTGCATGACCAATGGGCCTCTCTTTCCACTGGCAGGTCCTCATTaGTGGTTACCTGTTCAAACT | + |
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Preference number: 4 (lower is better) Translates to: FPCTEAYKFCMTNGPLFPLAGPH*WLPVQT Trigger: AGTTTGAACAGGTAACCAGCAATGAGGACCTGCCAG...TGGAAAGAGAGGCCCATTGGTCATGCAAAATTTATATGCCTCAGTACAGGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| CDS-3UTR GCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACCTGGCAGGTCCTCATTaGTGGTTACCTGTTCAAACT | + |
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Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYLAGPH*WLPVQT Trigger: AGTTTGAACAGGTAACCAGCAATGAGGACCTGCCAG...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016977.15 ENSMUST00000112901.2 |
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| CDS-3UTR TCA 90 bp | TTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAATTTTGCATGACCAATTACCTGTTCAAACTGTaGAAAACATCGTCTCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: FLALAFPCTEAYKFCMTNYLFKL*KTSSPN Trigger: ATTTGGAGACGATGTTTTTCACAGTTTGAACAGGTA...ATTGGTCATGCAAAATTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112901.2 |
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| CDS-3UTR TCA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACTACCTGTTCAAACTGTaGAAAACATCGTCTCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LESADNHLEVYWQELHKYYLFKL*KTSSPN Trigger: ATTTGGAGACGATGTTTTTCACAGTTTGAACAGGTA...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016977.15 ENSMUST00000112901.2 |
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| CDS TCA 90 bp | GTAGGGGTTCTCCATTGGGACTGGCTGCTTGAGTTCCGCGATCCGTaGAGCAGCCAGCCGCGGTTGTCAAATTCTTCCTCCCTATACCAC | + |
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Preference number: 5 (lower is better) Translates to: VGVLHWDWLLEFRDP*SSQPRLSNSSSLYH Trigger: GTGGTATAGGGAGGAAGAATTTGACAACCGCGGCTGGCTGCTTCACGGATCGCGGAACTCAAGCAGCCAGTCCCAATGGAGAACCCCTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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| CDS TCA 90 bp | AACATCGTCTCCAAATCACAGAAACTGCTTGAGTTCCGCGATCCGTaGAGCAGCCAGCCGCGGTTGTCAAATTCTTCCTCCCTATACCAC | + |
|
Preference number: 5 (lower is better) Translates to: NIVSKSQKLLEFRDP*SSQPRLSNSSSLYH Trigger: GTGGTATAGGGAGGAAGAATTTGACAACCGCGGCTGGCTGCTTCACGGATCGCGGAACTCAAGCAGTTTCTGTGATTTGGAGACGATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016977.15 ENSMUST00000112898.8 ENSMUST00000112901.2 |
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| CDS-3UTR CAA 90 bp | TTGGAGTCTGCTGACAACCACTTAGAGGTTTATTGGCAGGAACTTCACAAATACATTGGGACTGGCTGCTaGAGTTCCGCGATCCGTGAA | + |
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Preference number: 5 (lower is better) Translates to: LESADNHLEVYWQELHKYIGTGC*SSAIRE Trigger: TTCACGGATCGCGGAACTCAAGCAGCCAGTCCCAAT...GTATTTGTGAAGTTCCTGCCAATAAACCTCTAAGTGGTTGTCAGCAGACTCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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| CDS TCA 72 bp | GCTCCTTGTAGGGGTTCTCCATTGGGACTGGCTGCTTaGGTTCCGCGATCCGTGAAGCAGCCAGCCGCGGTT | + |
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Preference number: 6 (lower is better) Translates to: APCRGSPLGLAA*VPRSVKQPAAV Trigger: AACCGCGGCTGGCTGCTTCACGGATCGCGGAACTCAAGCAGCCAGTCCCAATGGAGAACCCCTACAAGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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| CDS TCA 72 bp | CTCCATTGGGACTGGCTGCTTGAGTTCCGCGATCCGTaGAGCAGCCAGCCGCGGTTGTCAAATTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LHWDWLLEFRDP*SSQPRLSNSSS Trigger: GGAGGAAGAATTTGACAACCGCGGCTGGCTGCTTCACGGATCGCGGAACTCAAGCAGCCAGTCCCAATGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198453.2 |
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