Pregenerated sensors for MRPS18B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024436Ensembl transcript IDs: ENSMUST00000025305.16, ENSMUST00000113782.10, ENSMUST00000172642.2, ENSMUST00000174349.8, ENSMUST00000174807.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAACATCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATaGCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAA | + |
|
Preference number: 1 (lower is better) Translates to: KHLVPLNVKCALFSS*QPVPYRVCHCHKTE Trigger: TTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGATGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR TCA 90 bp | GGCTGGTGGAGTCACACTGACAGCTCCATGCACAGTACCAAAGTCAGCATCCCGGGGGGACGTAGTAACTaGGAAGACCACACTCCCTGG | + |
|
Preference number: 2 (lower is better) Translates to: GWWSHTDSSMHSTKVSIPGGRSN*EDHTPW Trigger: CCAGGGAGTGTGGTCTTCTCAGTTACTACGTCCCCC...CGGGATGCTGACTTTGGTACTGTGCATGGAGCTGTCAGTGTGACTCCACCAGCC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| 3UTR-3UTR CCA 90 bp | CACACTGACAGCTCCATGCACAGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGAAGACCACACTCCCTaGCTTTCTGGATGGCCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: HTDSSMHSTKVSIPGLNLEDHTP*LSGWPG Trigger: CCCAGGCCATCCAGAAAGCCAGGGAGTGTGGTCTTC...CAGGTTGAGCCCCGGGATGCTGACTTTGGTACTGTGCATGGAGCTGTCAGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| 3UTR-3UTR TCA 90 bp | TCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCAGTACTCCCTTGGTCTaGCTTCCCCAGGTCACAAGT | + |
|
Preference number: 2 (lower is better) Translates to: SATVTKQNPLQDTGYHVASTPLV*LPQVTS Trigger: ACTTGTGACCTGGGGAAGTCAGACCAAGGGAGTACT...GGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR TCA 90 bp | TCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCAGTACTCCCTTGGTCTaGCTTCCCCAGGTCACAAGT | + |
|
Preference number: 2 (lower is better) Translates to: SSPPQRQMCFVLFMPASSSTPLV*LPQVTS Trigger: ACTTGTGACCTGGGGAAGTCAGACCAAGGGAGTACT...GGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR GCA 90 bp | TCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCGTTCCCTATAGGGTCTaGCACTGTCACAAAACAGAA | + |
|
Preference number: 2 (lower is better) Translates to: SRAYTRVSSLYVSPHQLPVPYRV*HCHKTE Trigger: TTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAAC...GGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR GCA 90 bp | TCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCCCTCAACGTCAAATGTaGTTTGTTCTCTTCATGCCA | + |
|
Preference number: 2 (lower is better) Translates to: SRAYTRVSSLYVSPHQLPPQRQM*FVLFMP Trigger: TGGCATGAAGAGAACAAAGCACATTTGACGTTGAGG...GGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR GCA 72 bp | GTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATaGCAGCCAGTTCCCTATAGGGTCTGCCACTGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: VPLNVKCALFSS*QPVPYRVCHCH Trigger: GTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR GCA 72 bp | TTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTCTaGCACTGTCACAAAACAGAACCCTTTGCAGGACAC | + |
|
Preference number: 3 (lower is better) Translates to: LFSSCQPVPYRV*HCHKTEPFAGH Trigger: GTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR CAA 90 bp | TCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCACAAAACAGAACCCTTaGCAGGACACAGGATACCAC | + |
|
Preference number: 3 (lower is better) Translates to: SRAYTRVSSLYVSPHQLPTKQNP*QDTGYH Trigger: GTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGT...GGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR-3UTR CAA 90 bp | TCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCAACGTCAAATGTGCTTaGTTCTCTTCATGCCAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: SRAYTRVSSLYVSPHQLPNVKCA*FSSCQP Trigger: TGGCTGGCATGAAGAGAACAAAGCACATTTGACGTT...GGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | ACACTGACAGCTCCATGCACAGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGCAGGAGGGCCTCTGGTaGAAAGAGTCTGGAGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TLTAPCTVPKSASRGSTWQEGLW*KESGGE Trigger: TTCCCCTCCAGACTCTTTGCACCAGAGGCCCTCCTG...CCAGGTTGAGCCCCGGGATGCTGACTTTGGTACTGTGCATGGAGCTGTCAGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR CCA 90 bp | ACCAAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTAACTGAGAAGACCCTTCAGGAGGGCCTCTaGTGCAAAGAGTCTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TKVSIPGLNLGDVVTEKTLQEGL*CKESGG Trigger: CCCTCCAGACTCTTTGCACCAGAGGCCCTCCTGAAG...GGTCTTCTCAGTTACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR CCA 90 bp | TCCATGCACAGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTATCGGGTCCGCTGTGGTaGCACACCACCTTTGTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SMHSTKVSIPGLNLGDVVSGPLW*HTTFVV Trigger: AACCACAAAGGTGGTGTGCCACCACAGCGGACCCGA...TACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTTGGTACTGTGCATGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR GCA 90 bp | CACAGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTAACTGAGCACCACCTTTGTGGTTaGGGCGGTAGTCAGCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: HSTKVSIPGLNLGDVVTEHHLCG*GGSQPK Trigger: TTTGGGCTGACTACCGCCGCAACCACAAAGGTGGTG...CTCAGTTACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTTGGTACTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR CCA 90 bp | CACAGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTAACTGAGAACGGGAAGCGAGGATaGAGCATCTTCTTCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: HSTKVSIPGLNLGDVVTENGKRG*SIFFRR Trigger: CCTCCTGAAGAAGATGCTCCATCCTCGCTTCCCGTT...CTCAGTTACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTTGGTACTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR TCA 90 bp | AGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTGGGGGACGTAGTAACTaGGAAGACCACACTCCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RVCHCHKTEPFAGHRIPRGGRSN*EDHTPW Trigger: CCAGGGAGTGTGGTCTTCTCAGTTACTACGTCCCCC...ACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR GCA 90 bp | GCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCCTACAGGAGGGCCTCTGGTaGAAAGAGTCTGGAGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ATVTKQNPLQDTGYHVALQEGLW*KESGGE Trigger: TTCCCCTCCAGACTCTTTGCACCAGAGGCCCTCCTG...TAGGGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | GCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCCTACTTCAGGAGGGCCTCTaGTGCAAAGAGTCTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ATVTKQNPLQDTGYHVALLQEGL*CKESGG Trigger: CCCTCCAGACTCTTTGCACCAGAGGCCCTCCTGAAG...TAGGGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | GCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCCTATCGGGTCCGCTGTGGTaGCACACCACCTTTGTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: ATVTKQNPLQDTGYHVALSGPLW*HTTFVV Trigger: AACCACAAAGGTGGTGTGCCACCACAGCGGACCCGA...TAGGGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | TCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCAGTGTGGGGGCTGGTaGAGTCACACTGACAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SSPPQRQMCFVLFMPASSQCGGW*SHTDSS Trigger: GGAGCTGTCAGTGTGACTCCACCAGCCCCCACACTG...GGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | TCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTGTAGTGGGCATCTCTaGCATCGACTCAGGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SSCQPVPYRVCHCHKTEPCSGHL*HRLRWR Trigger: CCGCCACCTGAGTCGATGCCAGAGATGCCCACTACA...GGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR TCA 90 bp | TCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCGGGGGACGTAGTAACTaGGAAGACCACACTCCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SSPPQRQMCFVLFMPASSGGRSN*EDHTPW Trigger: CCAGGGAGTGTGGTCTTCTCAGTTACTACGTCCCCC...GGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR TCA 90 bp | CAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACTGGTGGAGTCACACTaGCAGCTCCATGCACAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: QPVPYRVCHCHKTEPFAGLVESH*QLHAQY Trigger: GTACTGTGCATGGAGCTGTCAGTGTGACTCCACCAG...TCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR GCA 90 bp | ACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCCAGGAGGGCCTCTGGTaGAAAGAGTCTGGAGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TSNVLCSLHASQFPIGSAQEGLW*KESGGE Trigger: TTCCCCTCCAGACTCTTTGCACCAGAGGCCCTCCTG...GGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | TCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCTCGGGTCCGCTGTGGTaGCACACCACCTTTGTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SSPPQRQMCFVLFMPASSSGPLW*HTTFVV Trigger: AACCACAAAGGTGGTGTGCCACCACAGCGGACCCGA...GGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | CAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGAAGACCACACTCCCTaGCTTTCTGGATGGCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: QFPIGSATVTKQNPLQDTEDHTP*LSGWPG Trigger: CCCAGGCCATCCAGAAAGCCAGGGAGTGTGGTCTTC...TGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | TATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACAGTGTGGGGGCTGGTaGAGTCACACTGACAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YRVCHCHKTEPFAGHRIPQCGGW*SHTDSS Trigger: GGAGCTGTCAGTGTGACTCCACCAGCCCCCACACTG...TGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | ACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCCAACAGTGTGGGGGCTaGTGGAGTCACACTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: TSNVLCSLHASQFPIGSAQQCGG*WSHTDS Trigger: GCTGTCAGTGTGACTCCACCAGCCCCCACACTGTTG...GGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | CCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACACCTGACAACAGTGTaGGGGCTGGTGGAGTCACAC | + |
|
Preference number: 4 (lower is better) Translates to: PYRVCHCHKTEPFAGHRIHLTTV*GLVESH Trigger: GTGTGACTCCACCAGCCCCCACACTGTTGTCAGGTG...TATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | AGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATGTAGTGGGCATCTCTaGCATCGACTCAGGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SPPQRQMCFVLFMPASSLCSGHL*HRLRWR Trigger: CCGCCACCTGAGTCGATGCCAGAGATGCCCACTACA...TAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | TCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCAGCACTCTGGGAGCCTaGCTGCTCAATGGAGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: SATVTKQNPLQDTGYHVASTLGA*LLNGGF Trigger: GAATCCTCCATTGAGCAGCCAGGCTCCCAGAGTGCT...GGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | TCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCAGCACTCTGGGAGCCTaGCTGCTCAATGGAGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: SSCQPVPYRVCHCHKTEPSTLGA*LLNGGF Trigger: GAATCCTCCATTGAGCAGCCAGGCTCCCAGAGTGCT...GGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR TCA 90 bp | CCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGCTGGTGGAGTCACACTaGCAGCTCCATGCACAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: PLNVKCALFSSCQPVPYRLVESH*QLHAQY Trigger: GTACTGTGCATGGAGCTGTCAGTGTGACTCCACCAG...CCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | TCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGAAGACCACACTCCCTaGCTTTCTGGATGGCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SPSTSNVLCSLHASQFPIEDHTP*LSGWPG Trigger: CCCAGGCCATCCAGAAAGCCAGGGAGTGTGGTCTTC...TATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR TCA 90 bp | AGTACCAAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTAACTGAGAAGGTTGTGGTATTCTTCTaGATCCAGGTACTTCCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: STKVSIPGLNLGDVVTEKVVVFF*IQVLPR Trigger: CCTTGGAAGTACCTGGATTCAGAAGAATACCACAAC...CTTCTCAGTTACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTTGGTACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS-3UTR GCA 90 bp | TCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATACACCACCTTTGTGGTTaGGGCGGTAGTCAGCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: SPSTSNVLCSLHASQFPIHHLCG*GGSQPK Trigger: TTTGGGCTGACTACCGCCGCAACCACAAAGGTGGTG...TATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | GCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTAGCCCTAGTCAGCTTCTTGTGCTaGTTCATACAGACCCCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ATVTKQNPLQDTGYHVALVSFLC*FIQTPV Trigger: CACAGGGGTCTGTATGAAGCAGCACAAGAAGCTGAC...TAGGGCTACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR GCA 90 bp | CAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGATGGGTCAGCTTCTTGTaGTGCTTCATACAGACCCCT | + |
|
Preference number: 4 (lower is better) Translates to: QPVPYRVCHCHKTEPFAGWVSFL*CFIQTP Trigger: AGGGGTCTGTATGAAGCAGCACAAGAAGCTGACCCA...TCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | TCTAGTCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCAACGGGAAGCGAGGATaGAGCATCTTCTTCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SSPPQRQMCFVLFMPASSNGKRG*SIFFRR Trigger: CCTCCTGAAGAAGATGCTCCATCCTCGCTTCCCGTT...GGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | ATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACAGACAGCTCTCTCTCTaGTGGCTGTTGCCAGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: IGSATVTKQNPLQDTGYHRQLSL*WLLPAV Trigger: TACAGCTGGCAACAGCCACCAGAGAGAGAGCTGTCT...GTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR TCA 90 bp | GCCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGTTGTGGTATTCTTCTaGATCCAGGTACTTCCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: ASQFPIGSATVTKQNPLQVVVFF*IQVLPR Trigger: CCTTGGAAGTACCTGGATTCAGAAGAATACCACAAC...CTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | GCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAAGTCAGCTTCTTGTGCTaGTTCATACAGACCCCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ALFSSCQPVPYRVCHCHKVSFLC*FIQTPV Trigger: CACAGGGGTCTGTATGAAGCAGCACAAGAAGCTGAC...TTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR GCA 90 bp | GCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTCTGCCACTGTCACAAACTCAATGGAGGATTCTaGTGGTGGTGTAGTGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: ALFSSCQPVPYRVCHCHKLNGGF*WWCSGH Trigger: ATGCCCACTACACCACCAGCAGAATCCTCCATTGAG...TTTGTGACAGTGGCAGACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | ATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACCTCAATGGAGGATTCTaGTGGTGGTGTAGTGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: IGSATVTKQNPLQDTGYHLNGGF*WWCSGH Trigger: ATGCCCACTACACCACCAGCAGAATCCTCCATTGAG...GTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | TATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCAAGACAGCTCTCTCTCTaGTGGCTGTTGCCAGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: YRVCHCHKTEPFAGHRIPRQLSL*WLLPAV Trigger: TACAGCTGGCAACAGCCACCAGAGAGAGAGCTGTCT...TGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | TCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATATGGGTCAGCTTCTTGTaGTGCTTCATACAGACCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SPSTSNVLCSLHASQFPIWVSFL*CFIQTP Trigger: AGGGGTCTGTATGAAGCAGCACAAGAAGCTGACCCA...TATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | AGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCATAAACATCTAGTCCCCCTTCAGGAGGGCCTCTaGTGCAAAGAGTCTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLQFICKSSPVTHKHLVPLQEGL*CKESGG Trigger: CCCTCCAGACTCTTTGCACCAGAGGCCCTCCTGAAG...GGGGACTAGATGTTTATGGGTAACTGGTGAGGACTTACATATAAACTGGAGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | CCATCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACACCTGACAACAGTGTaGGGGCTGGTGGAGTCACAC | + |
|
Preference number: 4 (lower is better) Translates to: PSRAYTRVSSLYVSPHQLHLTTV*GLVESH Trigger: GTGTGACTCCACCAGCCCCCACACTGTTGTCAGGTG...TAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | TATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCATTGCCAGCTGTACCATaGGTACCAAGGTTCACCTGT | + |
|
Preference number: 4 (lower is better) Translates to: YRVCHCHKTEPFAGHRIPLPAVP*VPRFTC Trigger: ACAGGTGAACCTTGGTACCCATGGTACAGCTGGCAA...TGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174807.8 |
||
| CDS-3UTR TCA 90 bp | CCTATAGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACGTTGTGGTATTCTTCTaGATCCAGGTACTTCCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: PIGSATVTKQNPLQDTGYVVVFF*IQVLPR Trigger: CCTTGGAAGTACCTGGATTCAGAAGAATACCACAAC...GTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCTATAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | GGTGAAGAGACACAGCTTTATTGTATAAAAGCTGAGCCAGGAGGTTTAAATCAGCAACAGTGTGGGGGCTaGTGGAGTCACACTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: GEETQLYCIKAEPGGLNQQQCGG*WSHTDS Trigger: GCTGTCAGTGTGACTCCACCAGCCCCCACACTGTTG...CTGATTTAAACCTCCTGGCTCAGCTTTTATACAATAAAGCTGTGTCTCTTCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 |
||
| CDS-3UTR CCA 90 bp | GCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCATAAACTGTAGTGGGCATCTCTaGCATCGACTCAGGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: AYTRVSSLYVSPHQLPINCSGHL*HRLRWR Trigger: CCGCCACCTGAGTCGATGCCAGAGATGCCCACTACA...GTTTATGGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | CCATCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTAAGCACTCTGGGAGCCTaGCTGCTCAATGGAGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: PSRAYTRVSSLYVSPHQLSTLGA*LLNGGF Trigger: GAATCCTCCATTGAGCAGCCAGGCTCCCAGAGTGCT...TAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR GCA 90 bp | TCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTACCCCTCAATGGAGGATTCTaGTGGTGGTGTAGTGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SRAYTRVSSLYVSPHQLPLNGGF*WWCSGH Trigger: ATGCCCACTACACCACCAGCAGAATCCTCCATTGAG...GGGTAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS-3UTR CCA 90 bp | CCATCAAGGGCATACACAAGAGTCTCCAGTTTATATGTAAGTCCTCACCAGTTAAGACAGCTCTCTCTCTaGTGGCTGTTGCCAGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: PSRAYTRVSSLYVSPHQLRQLSL*WLLPAV Trigger: TACAGCTGGCAACAGCCACCAGAGAGAGAGCTGTCT...TAACTGGTGAGGACTTACATATAAACTGGAGACTCTTGTGTATGCCCTTGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| 3UTR CAA 72 bp | CATAAACATCTAGTCCCCCTCAACGTCAAATGTGCTTaGTTCTCTTCATGCCAGCCAGTTCCCTATAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: HKHLVPLNVKCA*FSSCQPVPYRV Trigger: GACCCTATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGACTAGATGTTTATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS CCA 90 bp | CTAAGCACTCTGGGAGCCTGGCTGCTCAATGGAGGATTCTGCTGGTaGTGTAGTGGGCATCTCTGGCATCGACTCAGGTGGCGGGCCACT | + |
|
Preference number: 5 (lower is better) Translates to: LSTLGAWLLNGGFCW*CSGHLWHRLRWRAT Trigger: AGTGGCCCGCCACCTGAGTCGATGCCAGAGATGCCCACTACACCACCAGCAGAATCCTCCATTGAGCAGCCAGGCTCCCAGAGTGCTTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS CCA 90 bp | GTACTTCCAAGGCTCGCTCTCATATGGGGAAACGGGAAGCGAGGATaGAGCATCTTCTTCAGGAGGGCCTCTGGTGCAAAGAGTCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: VLPRLALIWGNGKRG*SIFFRRASGAKSLE Trigger: CTCCAGACTCTTTGCACCAGAGGCCCTCCTGAAGAAGATGCTCCATCCTCGCTTCCCGTTTCCCCATATGAGAGCGAGCCTTGGAAGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025305.16 ENSMUST00000172642.2 ENSMUST00000174349.8 ENSMUST00000174807.8 |
||
| CDS-3UTR CAA 90 bp | AAAGTCAGCATCCCGGGGCTCAACCTGGGGGACGTAGTAACTGAGAAGACCACATGTGATCCCGGCAGATaGGGCAAGGATTCCCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: KVSIPGLNLGDVVTEKTTCDPGR*GKDSQQ Trigger: TTGCTGGGAATCCTTGCCCAATCTGCCGGGATCACA...TGTGGTCTTCTCAGTTACTACGTCCCCCAGGTTGAGCCCCGGGATGCTGACTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174349.8 |
||
| CDS TCA 90 bp | GTCAGCCCAAACAGGGCGAGAGCCATAGCGGTTGTGGTATTCTTCTaGATCCAGGTACTTCCAAGGCTCGCTCTCATATGGGGAAACGGG | + |
|
Preference number: 5 (lower is better) Translates to: VSPNRARAIAVVVFF*IQVLPRLALIWGNG Trigger: CCCGTTTCCCCATATGAGAGCGAGCCTTGGAAGTACCTGGATTCAGAAGAATACCACAACCGCTATGGCTCTCGCCCTGTTTGGGCTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025305.16 ENSMUST00000172642.2 ENSMUST00000174349.8 ENSMUST00000174807.8 |
||
| CDS-3UTR CAA 90 bp | AGGGTCTGCCACTGTCACAAAACAGAACCCTTTGCAGGACACAGGATACCACGTTGTGATCCCGGCAGATaGGGCAAGGATTCCCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: RVCHCHKTEPFAGHRIPRCDPGR*GKDSQQ Trigger: TTGCTGGGAATCCTTGCCCAATCTGCCGGGATCACA...ACGTGGTATCCTGTGTCCTGCAAAGGGTTCTGTTTTGTGACAGTGGCAGACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS-3UTR CAA 90 bp | TCCCCCTCAACGTCAAATGTGCTTTGTTCTCTTCATGCCAGCCAGTTCCCTATATGTGATCCCGGCAGATaGGGCAAGGATTCCCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: SPSTSNVLCSLHASQFPICDPGR*GKDSQQ Trigger: TTGCTGGGAATCCTTGCCCAATCTGCCGGGATCACA...TATAGGGAACTGGCTGGCATGAAGAGAACAAAGCACATTTGACGTTGAGGGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025305.16 ENSMUST00000174807.8 |
||
| CDS GCA 72 bp | TTCGGGTCCGCTGTGGTGGCACACCACCTTTGTGGTTaGGGCGGTAGTCAGCCCAAACAGGGCGAGAGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: FGSAVVAHHLCG*GGSQPKQGESH Trigger: ATGGCTCTCGCCCTGTTTGGGCTGACTACCGCCGCAACCACAAAGGTGGTGTGCCACCACAGCGGACCCGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025305.16 ENSMUST00000172642.2 ENSMUST00000174349.8 ENSMUST00000174807.8 |
||
| CDS CCA 72 bp | CTGGGAGCCTGGCTGCTCAATGGAGGATTCTGCTGGTaGTGTAGTGGGCATCTCTGGCATCGACTCAGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LGAWLLNGGFCW*CSGHLWHRLRW Trigger: CCACCTGAGTCGATGCCAGAGATGCCCACTACACCACCAGCAGAATCCTCCATTGAGCAGCCAGGCTCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS GCA 72 bp | AGCACTCTGGGAGCCTGGCTGCTCAATGGAGGATTCTaGTGGTGGTGTAGTGGGCATCTCTGGCATCGACTC | + |
|
Preference number: 6 (lower is better) Translates to: STLGAWLLNGGF*WWCSGHLWHRL Trigger: GAGTCGATGCCAGAGATGCCCACTACACCACCAGCAGAATCCTCCATTGAGCAGCCAGGCTCCCAGAGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025305.16 ENSMUST00000113782.10 ENSMUST00000174807.8 |
||
| CDS CCA 72 bp | AGGCTCGCTCTCATATGGGGAAACGGGAAGCGAGGATaGAGCATCTTCTTCAGGAGGGCCTCTGGTGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: RLALIWGNGKRG*SIFFRRASGAK Trigger: CTTTGCACCAGAGGCCCTCCTGAAGAAGATGCTCCATCCTCGCTTCCCGTTTCCCCATATGAGAGCGAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025305.16 ENSMUST00000172642.2 ENSMUST00000174349.8 ENSMUST00000174807.8 |
||
| CDS TCA 72 bp | AACAGGGCGAGAGCCATAGCGGTTGTGGTATTCTTCTaGATCCAGGTACTTCCAAGGCTCGCTCTCATATGG | + |
|
Preference number: 6 (lower is better) Translates to: NRARAIAVVVFF*IQVLPRLALIW Trigger: CCATATGAGAGCGAGCCTTGGAAGTACCTGGATTCAGAAGAATACCACAACCGCTATGGCTCTCGCCCTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025305.16 ENSMUST00000172642.2 ENSMUST00000174349.8 ENSMUST00000174807.8 |
||