Pregenerated sensors for MRPS18A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023967Ensembl transcript IDs: ENSMUST00000024763.10, ENSMUST00000123646.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGCCAGGCAGAAGACCACAGTGGCCAGGAGATCCAGCTCCTGGCTaGCCTTGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACAG | + |
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Preference number: 1 (lower is better) Translates to: QPGRRPQWPGDPAPG*PWLPTLQLGRSKAQ Trigger: CTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGGAGCTGGATCTCCTGGCCACTGTGGTCTTCTGCCTGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| 3UTR CAA 90 bp | AGGCAGAAGACCACAGTGGCCAGGAGATCCAGCTCCTGGCTGCCCTaGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACAGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: RQKTTVARRSSSWLP*ASNIAAGQIQGTEV Trigger: AACTTCTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGGAGCTGGATCTCCTGGCCACTGTGGTCTTCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| 3UTR-3UTR GCA 90 bp | TATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCTCCAACCTCAGCCCCAGCCCTTGGCTTCCAACATTaGAGCTGGGCAGATCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: YYIALGKAPVPAPTSAPALGFQH*SWADPR Trigger: CCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAG...GGCTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCCAAGGCAATGTAATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| 3UTR-3UTR CCA 90 bp | GGGAAGCCAAGAGCCTGCTTTATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGGGCAGAAGACCACAGTaGCCAGGAGATCCAGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GKPRACFITLPWVRLPSLGRRPQ*PGDPAP Trigger: AGGAGCTGGATCTCCTGGCCACTGTGGTCTTCTGCC...CAGGGACGGGAGCCTTACCCAAGGCAATGTAATAAAGCAGGCTCTTGGCTTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| 3UTR-3UTR CAA 90 bp | TATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCTCCAACCTCAGCCCCAGCCCCTTGGCTTCCAACATaGCAGCTGGGCAGATCCAAG | + |
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Preference number: 3 (lower is better) Translates to: YYIALGKAPVPAPTSAPAPWLPT*QLGRSK Trigger: CTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGG...GGCTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCCAAGGCAATGTAATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR TCA 90 bp | CCAGCTCCTGGCTGCCCTTGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACTGCCGCCCGCAGCCTaGCACCAGAGCCCTGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: PAPGCPWLPTLQLGRSKALPPAA*HQSPEG Trigger: GCCCTCAGGGCTCTGGTGTCAGGCTGCGGGCGGCAG...TGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGGAGCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR TCA 90 bp | GCAACACTCCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGACAAGCTCCCCTACTGCCGCCCGCAGCCTaGCACCAGAGCCCTGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: ATLQLSRAAVRPMGQAPLLPPAA*HQSPEG Trigger: GCCCTCAGGGCTCTGGTGTCAGGCTGCGGGCGGCAG...TAGGGGAGCTTGTCCCATGGGTCTCACAGCAGCCCGAGAGAGCTGGAGTGTTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR TCA 90 bp | CTGGCTGCCCTTGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACAGAAGTCCCGGCACAAGCCTGTaGCCCGCCGGGGCAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: LAALGFQHCSWADPRHRSPGTSL*PAGAAC Trigger: GCATGCTGCCCCGGCGGGTCACAGGCTTGTGCCGGG...ACTTCTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CCA 90 bp | ACTCCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGACAAGCTCCCCTAGAACGCCTGCCAGGAACGCTTaGAGCTGCCGCCCGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: TPALSGCCETHGTSSPRTPARNA*SCRPQP Trigger: AGGCTGCGGGCGGCAGCTCCAAGCGTTCCTGGCAGG...CGTTCTAGGGGAGCTTGTCCCATGGGTCTCACAGCAGCCCGAGAGAGCTGGAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR CCA 90 bp | CCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGACAAGCTCCCCTAGAACGCAAGCCATAACCAGCCAGTaGCAGCGGGGCCTGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: PALSGCCETHGTSSPRTQAITSQ*QRGLPG Trigger: TCCTGGCAGGCCCCGCTGCCACTGGCTGGTTATGGC...TTGCGTTCTAGGGGAGCTTGTCCCATGGGTCTCACAGCAGCCCGAGAGAGCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR CCA 90 bp | CCTGGCTGCCCTTGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACAGAAGGCCATAACCAGCCAGTaGCAGCGGGGCCTGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: PGCPWLPTLQLGRSKAQKAITSQ*QRGLPG Trigger: TCCTGGCAGGCCCCGCTGCCACTGGCTGGTTATGGC...CTTCTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CCA 90 bp | TTTATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCTCCAACCTCAGCCCCAGCCTGCCAGGAACGCTTaGAGCTGCCGCCCGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: FITLPWVRLPSLLQPQPQPARNA*SCRPQP Trigger: AGGCTGCGGGCGGCAGCTCCAAGCGTTCCTGGCAGG...CTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCCAAGGCAATGTAATAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CCA 90 bp | AACCTCAGCCCCAGCCAGGCAGAAGACCACAGTGGCCAGGAGATCCAGCTCCTGGTCGTCTTCCCTTCTTaGATCTTCACCACTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: NLSPSQAEDHSGQEIQLLVVFPS*IFTTSL Trigger: GAGAGAAGTGGTGAAGATCCAAGAAGGGAAGACGAC...CAGGAGCTGGATCTCCTGGCCACTGTGGTCTTCTGCCTGGCTGGGGCTGAGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR TCA 90 bp | CAGCCAAGCAACACTCCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGACAAGCCCTTGGGAGTTTCTGTaGTTCGGCCTTCAATTACAG | + |
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Preference number: 4 (lower is better) Translates to: QPSNTPALSGCCETHGTSPWEFL*FGLQLQ Trigger: CTGTAATTGAAGGCCGAATCACAGAAACTCCCAAGG...GCTTGTCCCATGGGTCTCACAGCAGCCCGAGAGAGCTGGAGTGTTGCTTGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR TCA 90 bp | GGGAAGCCAAGAGCCTGCTTTATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCCTTGGGAGTTTCTGTaGTTCGGCCTTCAATTACAG | + |
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Preference number: 4 (lower is better) Translates to: GKPRACFITLPWVRLPSLPWEFL*FGLQLQ Trigger: CTGTAATTGAAGGCCGAATCACAGAAACTCCCAAGG...CAGGGACGGGAGCCTTACCCAAGGCAATGTAATAAAGCAGGCTCTTGGCTTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CCA 90 bp | TCCTGGCTGCCCTTGGCTTCCAACATTGCAGCTGGGCAGATCCAAGGCACAGAATCTTCAGAGGCCTTCTaGAGTAGCAGACATTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SWLPLASNIAAGQIQGTESSEAF*SSRHCL Trigger: AAGACAATGTCTGCTACTCCAGAAGGCCTCTGAAGA...TTCTGTGCCTTGGATCTGCCCAGCTGCAATGTTGGAAGCCAAGGGCAGCCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CAA 90 bp | ATGGCGCAGCCAAGCAACACTCCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGAGTCGTCTTCCCTTCTaGGATCTTCACCACTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: MAQPSNTPALSGCCETHGSRLPF*DLHHFS Trigger: AGAGAAGTGGTGAAGATCCAAGAAGGGAAGACGACT...CCCATGGGTCTCACAGCAGCCCGAGAGAGCTGGAGTGTTGCTTGGCTGCGCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR CAA 90 bp | GCAACACTCCAGCTCTCTCGGGCTGCTGTGAGACCCATGGGACAAGCTCCCCTAGCTGTGGTCTGTGATTaGGTAACAGACCTGCTCGAT | + |
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Preference number: 5 (lower is better) Translates to: ATLQLSRAAVRPMGQAPLAVVCD*VTDLLD Trigger: ATCGAGCAGGTCTGTTACCAAATCACAGACCACAGC...TAGGGGAGCTTGTCCCATGGGTCTCACAGCAGCCCGAGAGAGCTGGAGTGTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123646.2 |
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| CDS-3UTR CAA 90 bp | CTGTTGTGGAGGATAATGGTTCTGGTGGGAGGAGCAAGTGCATCTTCTAGACGGATGGGCTTGACGGACTaGGGAGCCCAGCGAGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LLWRIMVLVGGASASSRRMGLTD*GAQRVR Trigger: TCTGACTCGCTGGGCTCCCAAGTCCGTCAAGCCCAT...CCGTCTAGAAGATGCACTTGCTCCTCCCACCAGAACCATTATCCTCCACAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CAA 90 bp | TTTATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCTCCAACCTCAGCCCCAGGCTGTGGTCTGTGATTaGGTAACAGACCTGCTCGAT | + |
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Preference number: 5 (lower is better) Translates to: FITLPWVRLPSLLQPQPQAVVCD*VTDLLD Trigger: ATCGAGCAGGTCTGTTACCAAATCACAGACCACAGC...CTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCCAAGGCAATGTAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CAA 90 bp | TATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGCTCCAACCTCAGCCCCAGCCGCTTGGGTTTATCCTTaGGTAAGCATCCTTCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: YYIALGKAPVPAPTSAPAAWVYP*VSILLE Trigger: TTCCAGAAGGATGCTTACCAAAGGATAAACCCAAGC...GGCTGGGGCTGAGGTTGGAGCAGGGACGGGAGCCTTACCCAAGGCAATGTAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS-3UTR CAA 90 bp | GGGAAGCCAAGAGCCTGCTTTATTACATTGCCTTGGGTAAGGCTCCCGTCCCTGAGTCGTCTTCCCTTCTaGGATCTTCACCACTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: GKPRACFITLPWVRLPSLSRLPF*DLHHFS Trigger: AGAGAAGTGGTGAAGATCCAAGAAGGGAAGACGACT...CAGGGACGGGAGCCTTACCCAAGGCAATGTAATAAAGCAGGCTCTTGGCTTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024763.10 |
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| CDS CAA 72 bp | TTGGTAAGCATCCTTCTGGAAGCTGTGGTCTGTGATTaGGTAACAGACCTGCTCGATGAGCCATCTTCACGC | + |
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Preference number: 6 (lower is better) Translates to: LVSILLEAVVCD*VTDLLDEPSSR Trigger: GCGTGAAGATGGCTCATCGAGCAGGTCTGTTACCAAATCACAGACCACAGCTTCCAGAAGGATGCTTACCAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024763.10 ENSMUST00000123646.2 |
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