Pregenerated sensors for MRPS17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034211Ensembl transcript IDs: ENSMUST00000042191.12, ENSMUST00000118420.8, ENSMUST00000119576.8, ENSMUST00000119604.8, ENSMUST00000119985.2, ENSMUST00000121339.2, ENSMUST00000121813.8
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGCCTTCTCCATACCCATCATTCCTGAGTCTGCAGAGAGGCCCTaGGGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAAGTTATC | + |
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Preference number: 1 (lower is better) Translates to: TAFSIPIIPESAERP*GPPSLPPSLPQEVI Trigger: GATAACTTCCTGAGGGAGGGAGGGAGGGAGGGAGGGAGGACCTCAGGGCCTCTCTGCAGACTCAGGAATGATGGGTATGGAGAAGGCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | CAGGCTGGCCTCAAACCCAGAGATCTACCTGCCTACTTTGCCTCCTaGGTACCGGGATTAAAGGTGTGTGCCACCACTGCCCAGGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: QAGLKPRDLPAYFAS*VPGLKVCATTAQAW Trigger: CCAGGCCTGGGCAGTGGTGGCACACACCTTTAATCCCGGTACTCAGGAGGCAAAGTAGGCAGGTAGATCTCTGGGTTTGAGGCCAGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | GCACTTGGACTGTCAGGCTTGGTGGCAAGGTTGCTGGCTTACAGGTaGGCACCATCATGTTCTCCTTGGAGTCTTGTGCTTGCCAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: ALGLSGLVARLLAYR*APSCSPWSLVLARQ Trigger: TTGCCTGGCAAGCACAAGACTCCAAGGAGAACATGATGGTGCTCACCTGTAAGCCAGCAACCTTGCCACCAAGCCTGACAGTCCAAGTGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR CCA 90 bp | TCCTACTGGAGGTGGTGTGGCAAGGCCCTAGTGGTTCTCAACCTGTaGGGGTCAGGATGCCATTGCAGTTGGTCCAATGATCTTTTCAAA | + |
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Preference number: 1 (lower is better) Translates to: SYWRWCGKALVVLNL*GSGCHCSWSNDLFK Trigger: TTTGAAAAGATCATTGGACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAGGGCCTTGCCACACCACCTCCAGTAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR GCA 90 bp | AACTTGTTCTATAGACCAGGCTGGCCTCAAACCCAGAGATCTACCTaGCTACTTTGCCTCCTGAGTACCGGGATTAAAGGTGTGTGCCAC | + |
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Preference number: 1 (lower is better) Translates to: NLFYRPGWPQTQRST*LLCLLSTGIKGVCH Trigger: GTGGCACACACCTTTAATCCCGGTACTCAGGAGGCAAAGTAGGCAGGTAGATCTCTGGGTTTGAGGCCAGCCTGGTCTATAGAACAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR GCA 90 bp | GGCTTACAGGTGAGCACCATCATGTTCTCCTTGGAGTCTTGTGCTTaGCAGGCAAGTACTCTACCACTGAACTGTAGCTCAAGCCCAAGA | + |
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Preference number: 1 (lower is better) Translates to: GLQVSTIMFSLESCA*QASTLPLNCSSSPR Trigger: TCTTGGGCTTGAGCTACAGTTCAGTGGTAGAGTACTTGCCTGGCAAGCACAAGACTCCAAGGAGAACATGATGGTGCTCACCTGTAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR CCA 90 bp | GCGCCATATCTGGAATTGGAGTTAACAGTTAACTGCCATGCGATGTaGGTGCTGAGGACTGAACCTGGGTCCTTTGCAAAAGCAGCCAGT | + |
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Preference number: 1 (lower is better) Translates to: APYLELELTVNCHAM*VLRTEPGSFAKAAS Trigger: ACTGGCTGCTTTTGCAAAGGACCCAGGTTCAGTCCTCAGCACCCACATCGCATGGCAGTTAACTGTTAACTCCAATTCCAGATATGGCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | GTCAAGTATCTTATAGACGCTTGGAGATGGAGACCTGAGATGTGCTaGGAGGATCACATAGACCCCACTGCCAGAGACCCAGATGCTCTA | + |
|
Preference number: 1 (lower is better) Translates to: VKYLIDAWRWRPEMC*EDHIDPTARDPDAL Trigger: TAGAGCATCTGGGTCTCTGGCAGTGGGGTCTATGTGATCCTCTCAGCACATCTCAGGTCTCCATCTCCAAGCGTCTATAAGATACTTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR GCA 90 bp | GAGCTTTGCTGGCATGTCTCATGTCTGTGTACTACATGCATGCAGTaGTCACTGAGAACAGAAGGCGGCGCCATATCTGGAATTGGAGTT | + |
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Preference number: 1 (lower is better) Translates to: ELCWHVSCLCTTCMQ*SLRTEGGAISGIGV Trigger: AACTCCAATTCCAGATATGGCGCCGCCTTCTGTTCTCAGTGAGCACTGCATGCATGTAGTACACAGACATGAGACATGCCAGCAAAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | GCTGGCATGTCTCATGTCTGTGTACTACATGCATGCAGTGCTCACTaGGAACAGAAGGCGGCGCCATATCTGGAATTGGAGTTAACAGTT | + |
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Preference number: 1 (lower is better) Translates to: AGMSHVCVLHACSAH*EQKAAPYLELELTV Trigger: AACTGTTAACTCCAATTCCAGATATGGCGCCGCCTTCTGTTCTCAGTGAGCACTGCATGCATGTAGTACACAGACATGAGACATGCCAGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | CCAGTTTCACCGGCCATGTTATTTAGGACTTCACACTTTCCTGTTTaGACTGCCTTCTCCATACCCATCATTCCTGAGTCTGCAGAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: PVSPAMLFRTSHFPV*TAFSIPIIPESAER Trigger: CCTCTCTGCAGACTCAGGAATGATGGGTATGGAGAAGGCAGTTCAAACAGGAAAGTGTGAAGTCCTAAATAACATGGCCGGTGAAACTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR TCA 90 bp | ATCCTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGATTCACGACCTCTGGAAGAACAAGCAGTCAGTGCTCTTGACC | + |
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Preference number: 1 (lower is better) Translates to: ILLQMVVSHHVVAGN*IHDLWKNKQSVLLT Trigger: GGTCAAGAGCACTGACTGCTTGTTCTTCCAGAGGTCGTGAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR GCA 90 bp | TTATTATGGTATTTTCTTATACCATGTGTGTCCCAGGAACTTAGATaGACTTGGACTGTCAGGCTTGGTGGCAAGGTTGCTGGCTTACAG | + |
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Preference number: 1 (lower is better) Translates to: LLWYFLIPCVSQELR*TWTVRLGGKVAGLQ Trigger: CTGTAAGCCAGCAACCTTGCCACCAAGCCTGACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAGAAAATACCATAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR GCA 90 bp | ATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACTAAGCTCTTTACTTTGCTGACTACT | + |
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Preference number: 1 (lower is better) Translates to: IQSNQYLQFRESEKG*NPVWSTKLFTLLTT Trigger: AGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTCCCAGGAACTTAGATGCACTTGGACTGTCAGGCTTGGTGGCAAGGTTGGGTGTGTGCCACCACTaGCCAGGCCTGGGATCAGTC | + |
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Preference number: 2 (lower is better) Translates to: VCPRNLDALGLSGLVARLGVCHH*PGLGSV Trigger: GACTGATCCCAGGCCTGGGCAGTGGTGGCACACACC...CAACCTTGCCACCAAGCCTGACAGTCCAAGTGCATCTAAGTTCCTGGGACACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR GCA 90 bp | CGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGACACACAGACAGAAATaGCTCTGGCTCCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: RTPQSCPLAATVCVWWHRTHRQK*LWLLLS Trigger: GGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGT...CCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGGCCCTAGTGGTTCTCAACCTGTGGGGGTCAGGATGCCATTGCAGTTGGTCCCCAGCAGCACCCCCTaGACCTGTCTATACACTTTT | + |
|
Preference number: 2 (lower is better) Translates to: QGPSGSQPVGVRMPLQLVPSSTP*TCLYTF Trigger: AAAAGTGTATAGACAGGTGCAGGGGGTGCTGCTGGG...GACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAGGGCCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGGCCCTAGTGGTTCTCAACCTGTGGGGGTCAGGATGCCATTGCAGTTGGTCATATGGAGGCCGGCCTaGTCTACAGAGCAAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: QGPSGSQPVGVRMPLQLVIWRPA*STEQVP Trigger: TGGAACTTGCTCTGTAGACCAGGCCGGCCTCCATAT...GACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAGGGCCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCTTACAGGTGAGCACCATCATGTTCTCCTTGGAGTCTTGTGCTTGCCAGAAGCTGCCCCTGGGATaGACCCCAAGACAAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: AGLQVSTIMFSLESCACQKLPLG*TPRQET Trigger: TGTCTCTTGTCTTGGGGTCCATCCCAGGGGCAGCTT...CTGGCAAGCACAAGACTCCAAGGAGAACATGATGGTGCTCACCTGTAAGCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | ACCGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACATCAGTTCAGAGAATCTaGAAAAGGATGCAACCCTGT | + |
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Preference number: 2 (lower is better) Translates to: TGLHKAVLWLPQCVCGGTSVQRI*KRMQPC Trigger: ACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGA...TGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGTGTGCTTTGGGGGAGGCAATaGACAATGAGACAATACATA | + |
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Preference number: 2 (lower is better) Translates to: LHKAVLWLPQCVCGGTGVLWGRQ*TMRQYI Trigger: TATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAG...CACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | ACCGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: TGLHKAVLWLPQCVCGGTESEKG*NPVWST Trigger: AGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTC...TGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGGATCACATAGACCCCACTGCCAGAGACCCAGATGCTCTAAAACGGGCTTTTTTGTAAGCTGCCCCTaGGATGGACCCCAAGACAAG | + |
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Preference number: 2 (lower is better) Translates to: RGSHRPHCQRPRCSKTGFFVSCP*DGPQDK Trigger: CTTGTCTTGGGGTCCATCCCAGGGGCAGCTTACAAA...AAAGCCCGTTTTAGAGCATCTGGGTCTCTGGCAGTGGGGTCTATGTGATCCTCT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | CGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGAGTAATGAAAACCATTaGGCAAAACACACAGACAGA | + |
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Preference number: 2 (lower is better) Translates to: RTPQSCPLAATVCVWWHRSNENH*AKHTDR Trigger: TCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT...CCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCTTACAGGTGAGCACCATCATGTTCTCCTTGGAGTCTTGTGCTTGCCAGTGTGTTCTGGGCCCTTaGGAACCAATCAGGATAGAA | + |
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Preference number: 2 (lower is better) Translates to: AGLQVSTIMFSLESCACQCVLGP*EPIRIE Trigger: TTCTATCCTGATTGGTTCCCAAGGGCCCAGAACACA...CTGGCAAGCACAAGACTCCAAGGAGAACATGATGGTGCTCACCTGTAAGCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGGGGATAAGGTCATGTTAGTGACCCCCATCTTAGGCTACCAGGAATGTGTAACACACAGACAGAAATaGCTCTGGCTCCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: PGDKVMLVTPILGYQECVTHRQK*LWLLLS Trigger: GGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGT...TACACATTCCTGGTAGCCTAAGATGGGGGTCACTAACATGACCTTATCCCCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGTGTCAATAGGATGGCTCAGTGGGTACAGGTGTGTTACTGGGAACCACGTAACACACAGACAGAAATaGCTCTGGCTCCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: SVSIGWLSGYRCVTGNHVTHRQK*LWLLLS Trigger: GGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGT...TACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR CCA 90 bp | TGGTATTTTCTTATACCATGTGTGTCCCAGGAACTTAGATGCACTTGGACTGTCGCCACAGTGTGTGTGTaGTGGCACAGGTGTGCCCAC | + |
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Preference number: 2 (lower is better) Translates to: WYFLIPCVSQELRCTWTVATVCV*WHRCAH Trigger: GTGGGCACACCTGTGCCACCACACACACACTGTGGC...GACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAGAAAATACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGGATCACATAGACCCCACTGCCAGAGACCCAGATGCTCTAAAACGGGCTTTCCACCATGTGGTTGCTaGGAATTGAATTCACGACCT | + |
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Preference number: 2 (lower is better) Translates to: RGSHRPHCQRPRCSKTGFPPCGC*ELNSRP Trigger: AGGTCGTGAATTCAATTCCCAGCAACCACATGGTGG...AAAGCCCGTTTTAGAGCATCTGGGTCTCTGGCAGTGGGGTCTATGTGATCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | GTGAAAGGAGACCGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGAGCTCTTTACTTTGCTaGCTACTTTTAATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: VKGDRTPQSCPLAATVCVSSLLC*LLLMSQ Trigger: CTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCT...CACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR CAA 90 bp | GATCCTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAATTCACGACCTCTGGAAGAACAAGCAGTCAGTGCTCTTGAC | + |
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Preference number: 2 (lower is better) Translates to: DPITDGCEPPCGCWE*NSRPLEEQAVSALD Trigger: GTCAAGAGCACTGACTGCTTGTTCTTCCAGAGGTCGTGAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | CCCAGAACCTCCCTGGGAACTGACATCTTACTTGGCAGAAAGAGCCATGTAAGTCAGCTGCCTAGTGCTTaGGATAGGACTATAAATCCA | + |
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Preference number: 2 (lower is better) Translates to: PRTSLGTDILLGRKSHVSQLPSA*DRTINP Trigger: TGGATTTATAGTCCTATCTCAAGCACTAGGCAGCTG...ACTTACATGGCTCTTTCTGCCAAGTAAGATGTCAGTTCCCAGGGAGGTTCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR GCA 90 bp | TGGTATTTTCTTATACCATGTGTGTCCCAGGAACTTAGATGCACTTGGACTGTCGCGGGTCTGCAGAGATaGCCACCTGGAACTGTGTTA | + |
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Preference number: 2 (lower is better) Translates to: WYFLIPCVSQELRCTWTVAGLQR*PPGTVL Trigger: TAACACAGTTCCAGGTGGGCATCTCTGCAGACCCGC...GACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAGAAAATACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | AATAAGCTTGGACTCAGACCAACCACCCAGCAGCACCCCCTGCACCTGTCTATAAGTAATGAAAACCATTaGGCAAAACACACAGACAGA | + |
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Preference number: 2 (lower is better) Translates to: NKLGLRPTTQQHPLHLSISNENH*AKHTDR Trigger: TCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT...TATAGACAGGTGCAGGGGGTGCTGCTGGGTGGTTGGTCTGAGTCCAAGCTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR GCA 90 bp | AACAAAGGTGCTCAGTCCAAGATTTCTTTGGGGGAGGCAATGAACAATGAGACAACACACAGACAGAAATaGCTCTGGCTCCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: NKGAQSKISLGEAMNNETTHRQK*LWLLLS Trigger: GGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGT...TGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000042191.12 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | GCCGCATCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTGAAACACACAGACAGAAATaGCTCTGGCTCCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: AASLGIQSNQYLQFRESETHRQK*LWLLLS Trigger: GGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGT...TTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGTGTCAATAGGATGGCTCAGTGGGTACAGGTGTGTTACTGGGAACCACGTAGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: SVSIGWLSGYRCVTGNHVESEKG*NPVWST Trigger: AGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTC...TACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR TCA 90 bp | CTCAGTGTCAATAGGATGGCTCAGTGGGTACAGGTGTGTTACTGGGAACCACGTAGCTCTTTACTTTGCTaGCTACTTTTAATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: LSVNRMAQWVQVCYWEPRSSLLC*LLLMSQ Trigger: CTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCT...ACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | TACTGGGCCATCTCTCCAGTTTCACCGGCCATGTTATTTAGGACTTCACACTTTCTTACTAATCCCAGCTaGCTAGTGCTTGAGATAGGA | + |
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Preference number: 2 (lower is better) Translates to: YWAISPVSPAMLFRTSHFLTNPS*LVLEIG Trigger: TCCTATCTCAAGCACTAGGCAGCTGGGATTAGTAAG...AAAGTGTGAAGTCCTAAATAACATGGCCGGTGAAACTGGAGAGATGGCCCAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | AACTCAGTGTCAATAGGATGGCTCAGTGGGTACAGGTGTGTTACTGGGAACCACAGCTCTTTACTTTGCTaGCTACTTTTAATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: NSVSIGWLSGYRCVTGNHSSLLC*LLLMSQ Trigger: CTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCT...GTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGAGCTCACAAAATGATGCCGCATCCTTAGGCATACAGAGTAATCAGTACGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: TESSQNDAASLGIQSNQYESEKG*NPVWST Trigger: AGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTC...GTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR-3UTR GCA 90 bp | AACAAAGGTGCTCAGTCCAAGATTTCTTTGGGGGAGGCAATGAACAATGAGACAGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: NKGAQSKISLGEAMNNETESEKG*NPVWST Trigger: AGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTC...TGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000042191.12 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR CAA 90 bp | GCCCAAGAAACTTTAATGAAAACGATGCATCAGCATGCACATCAATaGGTCAAGTATCTTATAGACGCTTGGAGATGGAGACCTGAGATG | + |
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Preference number: 2 (lower is better) Translates to: AQETLMKTMHQHAHQ*VKYLIDAWRWRPEM Trigger: CATCTCAGGTCTCCATCTCCAAGCGTCTATAAGATACTTGACCAATTGATGTGCATGCTGATGCATCGTTTTCATTAAAGTTTCTTGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| 3UTR-3UTR TCA 90 bp | GATGCCGCATCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTAGTAATGAAAACCATTaGGCAAAACACACAGACAGA | + |
|
Preference number: 2 (lower is better) Translates to: DAASLGIQSNQYLQFRESSNENH*AKHTDR Trigger: TCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT...AGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR-3UTR TCA 90 bp | GATGCCGCATCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTAGCTCTTTACTTTGCTaGCTACTTTTAATGTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: DAASLGIQSNQYLQFRESSSLLC*LLLMSQ Trigger: CTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCT...AGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR-3UTR GCA 90 bp | GCTGTTTTCAGACACACCAGAAGAGGGCATCAGATCCTATTACAGATGGTTGTGCTTTCAAAACAAAGGTaGTCAGTCCAAGATTTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: AVFRHTRRGHQILLQMVVLSKQR*SVQDFF Trigger: AAAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAG...CACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAAACAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR-3UTR TCA 90 bp | GAGAATCTGAAAAAGGATGCAACCCTGTATGGAGCACTAAGCTCTTTACTTTGCAGTAATGAAAACCATTaGGCAAAACACACAGACAGA | + |
|
Preference number: 2 (lower is better) Translates to: ENLKKDATLYGALSSLLCSNENH*AKHTDR Trigger: TCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT...GCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR-3UTR TCA 90 bp | TTCTTTCAAAACAAAGGTGCTCAGTCCAAGATTTCTTTGGGGGAGGCAATGAACAGCTCTTTACTTTGCTaGCTACTTTTAATGTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: FFQNKGAQSKISLGEAMNSSLLC*LLLMSQ Trigger: CTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCT...GTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000042191.12 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR-3UTR TCA 90 bp | AAAGGATGCAACCCTGTATGGAGCACTAAGCTCTTTACTTTGCTGACTACTTTTAGTAATGAAAACCATTaGGCAAAACACACAGACAGA | + |
|
Preference number: 2 (lower is better) Translates to: KGCNPVWSTKLFTLLTTFSNENH*AKHTDR Trigger: TCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT...AAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
||
| 3UTR TCA 72 bp | TCCATACCCATCATTCCTGAGTCTGCAGAGAGGCCCTaGGGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: SIPIIPESAERP*GPPSLPPSLPQ Trigger: CTGAGGGAGGGAGGGAGGGAGGGAGGGAGGACCTCAGGGCCTCTCTGCAGACTCAGGAATGATGGGTATGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CCGGGATTAAAGGTGTGTGCCACCACTGCCCAGGCCTaGGATCAGTCTTTAAAAGCCAGTTTCCCGGCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PGLKVCATTAQA*DQSLKASFPAL Trigger: CAGGGCCGGGAAACTGGCTTTTAAAGACTGATCCCAGGCCTGGGCAGTGGTGGCACACACCTTTAATCCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CCCAGTACTTCAGAGGCAGAGGCTAGGCCTTTGATATaGAGGCCGGCCTGGTCTACAGAGCAAGTTCCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: PSTSEAEARPLI*RPAWSTEQVPG Trigger: TCCTGGAACTTGCTCTGTAGACCAGGCCGGCCTCCATATCAAAGGCCTAGCCTCTGCCTCTGAAGTACTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119576.8 ENSMUST00000121339.2 |
||
| 3UTR CCA 72 bp | TCCCTCCCTCCCTCAGGAAGTTATCTGGTCTCTCCATaGGTCCTATCTGTCCTAAGGGCACCTATGGGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: SLPPSGSYLVSP*VLSVLRAPMGP Trigger: GGGACCCATAGGTGCCCTTAGGACAGATAGGACCCATGGAGAGACCAGATAACTTCCTGAGGGAGGGAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | GGCTGGCCTCAAACCCAGAGATCTACCTGCCTACTTTaGCTCCTGAGTACCGGGATTAAAGGTGTGTGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: GWPQTQRSTCLL*LLSTGIKGVCH Trigger: GTGGCACACACCTTTAATCCCGGTACTCAGGAGGCAAAGTAGGCAGGTAGATCTCTGGGTTTGAGGCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | AGGTGGTGTGGCAAGGCCCTAGTGGTTCTCAACCTGTaGGGGTCAGGATGCCATTGCAGTTGGTCCAATGAT | + |
|
Preference number: 3 (lower is better) Translates to: RWCGKALVVLNL*GSGCHCSWSND Trigger: ATCATTGGACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAGGGCCTTGCCACACCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | GTGGAATTTGTCACACAGATCCTACTGGAGGTGGTGTaGCAAGGCCCTAGTGGTTCTCAACCTGTGGGGGTC | + |
|
Preference number: 3 (lower is better) Translates to: VEFVTQILLEVV*QGPSGSQPVGV Trigger: GACCCCCACAGGTTGAGAACCACTAGGGCCTTGCCACACCACCTCCAGTAGGATCTGTGTGACAAATTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | CAACAATGTAGACCAGGCTGGCCTCTGCACTTTGCCTaGGTGCTGCGATTAAAGGGGTACACTACCAGACCC | + |
|
Preference number: 3 (lower is better) Translates to: QQCRPGWPLHFA*VLRLKGYTTRP Trigger: GGGTCTGGTAGTGTACCCCTTTAATCGCAGCACTCAGGCAAAGTGCAGAGGCCAGCCTGGTCTACATTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CGCCTCAGTCTGTGGAATTTGTCACACAGATCCTACTaGAGGTGGTGTGGCAAGGCCCTAGTGGTTCTCAAC | + |
|
Preference number: 3 (lower is better) Translates to: RLSLWNLSHRSY*RWCGKALVVLN Trigger: GTTGAGAACCACTAGGGCCTTGCCACACCACCTCCAGTAGGATCTGTGTGACAAATTCCACAGACTGAGGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | CTACTTTGCCTCCTGAGTACCGGGATTAAAGGTGTGTaGCACCACTGCCCAGGCCTGGGATCAGTCTTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: LLCLLSTGIKGV*HHCPGLGSVFK Trigger: TTTAAAGACTGATCCCAGGCCTGGGCAGTGGTGGCACACACCTTTAATCCCGGTACTCAGGAGGCAAAGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | ATGCACTTGGACTGTCAGGCTTGGTGGCAAGGTTGCTaGCTTACAGGTGAGCACCATCATGTTCTCCTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: MHLDCQAWWQGC*LTGEHHHVLLG Trigger: TCCAAGGAGAACATGATGGTGCTCACCTGTAAGCCAGCAACCTTGCCACCAAGCCTGACAGTCCAAGTGCAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | TGGCATGTCTCATGTCTGTGTACTACATGCATGCAGTaGTCACTGAGAACAGAAGGCGGCGCCATATCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: WHVSCLCTTCMQ*SLRTEGGAISG Trigger: TCCAGATATGGCGCCGCCTTCTGTTCTCAGTGAGCACTGCATGCATGTAGTACACAGACATGAGACATGCCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | CTGCAGAGATGCCCACCTGGAACTGTGTTAAAGGGTTaGAGCTTTAGGAACCACTGGTCTAAAAGGCTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: LQRCPPGTVLKG*SFRNHWSKRLP Trigger: GGGAAGCCTTTTAGACCAGTGGTTCCTAAAGCTGCAACCCTTTAACACAGTTCCAGGTGGGCATCTCTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | TCTGTCCTAAGGGCACCTATGGGTCCCTCTCCACTTTaGGAGCCTGATGATCATCACTGGTATCGTCTAGTA | + |
|
Preference number: 3 (lower is better) Translates to: SVLRAPMGPSPL*EPDDHHWYRLV Trigger: TACTAGACGATACCAGTGATGATCATCAGGCTCCCAAAGTGGAGAGGGACCCATAGGTGCCCTTAGGACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CACAGCCAATTCCAGGAGGTCAATCGCCTCAGTCTGTaGAATTTGTCACACAGATCCTACTGGAGGTGGTGT | + |
|
Preference number: 3 (lower is better) Translates to: HSQFQEVNRLSL*NLSHRSYWRWC Trigger: ACACCACCTCCAGTAGGATCTGTGTGACAAATTCCACAGACTGAGGCGATTGACCTCCTGGAATTGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGATTCACGACCTCTGGAAGAACAAGCAGTCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: QMVVSHHVVAGN*IHDLWKNKQSV Trigger: CACTGACTGCTTGTTCTTCCAGAGGTCGTGAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | TCTCATGTCTGTGTACTACATGCATGCAGTGCTCACTaGGAACAGAAGGCGGCGCCATATCTGGAATTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: SHVCVLHACSAH*EQKAAPYLELE Trigger: CTCCAATTCCAGATATGGCGCCGCCTTCTGTTCTCAGTGAGCACTGCATGCATGTAGTACACAGACATGAGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | GGTCAAGTATCTTATAGACGCTTGGAGATGGAGACCTaGGATGTGCTGAGAGGATCACATAGACCCCACTGC | + |
|
Preference number: 3 (lower is better) Translates to: GQVSYRRLEMET*DVLRGSHRPHC Trigger: GCAGTGGGGTCTATGTGATCCTCTCAGCACATCTCAGGTCTCCATCTCCAAGCGTCTATAAGATACTTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | TTAAAAGCCAGTTTCCCGGCCCTGCATCTTACTCCATaGAGCTCTTCATACTGGTGCTGCTTACCTTTACCC | + |
|
Preference number: 3 (lower is better) Translates to: LKASFPALHLTP*SSSYWCCLPLP Trigger: GGGTAAAGGTAAGCAGCACCAGTATGAAGAGCTGCATGGAGTAAGATGCAGGGCCGGGAAACTGGCTTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | AAGGCCCTAGTGGTTCTCAACCTGTGGGGGTCAGGATaGCATTGCAGTTGGTCCAATGATCTTTTCAAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: KALVVLNLWGSG*HCSWSNDLFKE Trigger: CTCTTTGAAAAGATCATTGGACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAGGGCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CTTATACCATGTGTGTCCCAGGAACTTAGATGCACTTaGACTGTCAGGCTTGGTGGCAAGGTTGCTGGCTTA | + |
|
Preference number: 3 (lower is better) Translates to: LIPCVSQELRCT*TVRLGGKVAGL Trigger: TAAGCCAGCAACCTTGCCACCAAGCCTGACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | CTAGTGGTTCTCAACCTGTGGGGGTCAGGATGCCATTaGAGTTGGTCCAATGATCTTTTCAAAGAGGTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: LVVLNLWGSGCH*SWSNDLFKEVS Trigger: GGAAACCTCTTTGAAAAGATCATTGGACCAACTGCAATGGCATCCTGACCCCCACAGGTTGAGAACCACTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | CTGGAATTGGAGTTAACAGTTAACTGCCATGCGATGTaGGTGCTGAGGACTGAACCTGGGTCCTTTGCAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LELELTVNCHAM*VLRTEPGSFAK Trigger: TTTTGCAAAGGACCCAGGTTCAGTCCTCAGCACCCACATCGCATGGCAGTTAACTGTTAACTCCAATTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | TTTAGGAACCACTGGTCTAAAAGGCTTCCCTTCCCATaGCCTATCCTGGCACCAAGTCAAGAGTTTCCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: FRNHWSKRLPFP*PILAPSQEFPL Trigger: TAAGGGAAACTCTTGACTTGGTGCCAGGATAGGTCATGGGAAGGGAAGCCTTTTAGACCAGTGGTTCCTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | CCTGTGGGGGTCAGGATGCCATTGCAGTTGGTCCAATaGTCTTTTCAAAGAGGTTTCCAAAGACAACTATCG | + |
|
Preference number: 3 (lower is better) Translates to: PVGVRMPLQLVQ*SFQRGFQRQLS Trigger: CGATAGTTGTCTTTGGAAACCTCTTTGAAAAGATCATTGGACCAACTGCAATGGCATCCTGACCCCCACAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | GCCCTGCATCTTACTCCATGCAGCTCTTCATACTGGTaGTGCTTACCTTTACCCTCATTTTCTCTGATAACC | + |
|
Preference number: 3 (lower is better) Translates to: ALHLTPCSSSYW*CLPLPSFSLIT Trigger: GGTTATCAGAGAAAATGAGGGTAAAGGTAAGCAGCACCAGTATGAAGAGCTGCATGGAGTAAGATGCAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | TCAGTCCAAGATTTCTTTGGGGGAGGCAATGAACAATaGGACAATACATACGATCCAGGACAGAGAGCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: SVQDFFGGGNEQ*DNTYDPGQRAH Trigger: GTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000042191.12 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR TCA 72 bp | AAGACAACTATCGAAGATGAAGCTAGGTTTAAGAACTaGGACAGGACTCCTCTATCCTCTTCAGGTGGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: KTTIEDEARFKN*DRTPLSSSGGL Trigger: CAGCCCACCTGAAGAGGATAGAGGAGTCCTGTCTCAGTTCTTAAACCTAGCTTCATCTTCGATAGTTGTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | TATTTTCTTATACCATGTGTGTCCCAGGAACTTAGATaGACTTGGACTGTCAGGCTTGGTGGCAAGGTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: YFLIPCVSQELR*TWTVRLGGKVA Trigger: AGCAACCTTGCCACCAAGCCTGACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAGAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | CTGGGGTATATGCTCAATAAACTCTCCCTGTGTGACTaGGATTGGTGTTCGTGTAGTTTGCGAGGTAATTCT | + |
|
Preference number: 3 (lower is better) Translates to: LGYMLNKLSLCD*DWCSCSLRGNS Trigger: AGAATTACCTCGCAAACTACACGAACACCAATCTCAGTCACACAGGGAGAGTTTATTGAGCATATACCCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR TCA 72 bp | TTAGACAAGTCCCATCCTGGTAGACAGGTTAGACCATaGATATTAAACAAGGCAAGTCTCCTGCCACAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: LDKSHPGRQVRP*ILNKASLLPQL Trigger: CAACTGTGGCAGGAGACTTGCCTTGTTTAATATTCATGGTCTAACCTGTCTACCAGGATGGGACTTGTCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR CCA 72 bp | GAATCATTAAAACTCAGTGTCAATAGGATGGCTCAGTaGGTACAGGTGTGTTACTGGGAACCACGTAAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: ESLKLSVNRMAQ*VQVCYWEPRKS Trigger: ACTCTTACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
||
| 3UTR-3UTR CAA 90 bp | TGGTATTTTCTTATACCATGTGTGTCCCAGGAACTTAGATGCACTTGGACTGTCGCGCCATATCTGGAATaGGAGTTAACAGTTAACTGC | + |
|
Preference number: 3 (lower is better) Translates to: WYFLIPCVSQELRCTWTVAPYLE*ELTVNC Trigger: GCAGTTAACTGTTAACTCCAATTCCAGATATGGCGC...GACAGTCCAAGTGCATCTAAGTTCCTGGGACACACATGGTATAAGAAAATACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | CTGCATCTTACTCCATGCAGCTCTTCATACTGGTGCTaGTTACCTTTACCCTCATTTTCTCTGATAACCTTT | + |
|
Preference number: 3 (lower is better) Translates to: LHLTPCSSSYWC*LPLPSFSLITF Trigger: AAAGGTTATCAGAGAAAATGAGGGTAAAGGTAAGCAGCACCAGTATGAAGAGCTGCATGGAGTAAGATGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| 3UTR GCA 72 bp | AATCAGTACCTTCAGTTCAGAGAATCTGAAAAAGGATaGAACCCTGTATGGAGCACTAAGCTCTTTACTTTG | + |
|
Preference number: 3 (lower is better) Translates to: NQYLQFRESEKG*NPVWSTKLFTL Trigger: CAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR CCA 72 bp | CAGTTCAGAGAATCTGAAAAAGGATGCAACCCTGTATaGAGCACTAAGCTCTTTACTTTGCTGACTACTTTT | + |
|
Preference number: 3 (lower is better) Translates to: QFRESEKGCNPV*STKLFTLLTTF Trigger: AAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
||
| 3UTR TCA 72 bp | GTTAATAAATCTTTAATGGTCAGTGCTCTTAACCACTaGACTAACTTTCCAGCCCCATGGTCAATTATTATT | + |
|
Preference number: 3 (lower is better) Translates to: VNKSLMVSALNH*TNFPAPWSIII Trigger: AATAATAATTGACCATGGGGCTGGAAAGTTAGTTCAGTGGTTAAGAGCACTGACCATTAAAGATTTATTAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
||
| CDS-3UTR GCA 90 bp | CTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGTGTGCGATGTCCCCGACGCTaGACTGCTGAAGGGCATCGT | + |
|
Preference number: 4 (lower is better) Translates to: LHKAVLWLPQCVCGGTGVRCPRR*TAEGHR Trigger: ACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCG...CACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
||
| CDS-3UTR CCA 90 bp | ACCGGACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACATCCCCACAACCCATTTaGCGTGGACGGATGAACGGA | + |
|
Preference number: 4 (lower is better) Translates to: TGLHKAVLWLPQCVCGGTSPQPI*RGRMNG Trigger: TCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGA...TGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
||
| CDS-3UTR CCA 90 bp | GACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGTGTCCCCACAACCCATTTaGCGTGGACGGATGAACGGA | + |
|
Preference number: 4 (lower is better) Translates to: DSTKLSSGCHSVCVVAQVSPQPI*RGRMNG Trigger: TCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGA...CACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
||
| CDS-3UTR GCA 90 bp | CTACAGAGCAAGTTCCAGGACAGTCAAGGCTACACAGAGAAACCTTGTCTCCCACGATGTCCCCGACGCTaGACTGCTGAAGGGCATCGT | + |
|
Preference number: 4 (lower is better) Translates to: LQSKFQDSQGYTEKPCLPRCPRR*TAEGHR Trigger: ACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCG...TGGGAGACAAGGTTTCTCTGTGTAGCCTTGACTGTCCTGGAACTTGCTCTGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119576.8 ENSMUST00000121339.2 |
||
| CDS-3UTR GCA 90 bp | GATGCCGCATCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTCGATGTCCCCGACGCTaGACTGCTGAAGGGCATCGT | + |
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Preference number: 4 (lower is better) Translates to: DAASLGIQSNQYLQFRESRCPRR*TAEGHR Trigger: ACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCG...AGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGCTCACAAAATGATGCCGCATCCTTAGGCATACAGAGTAATCAGTACCGATGTCCCCGACGCTaGACTGCTGAAGGGCATCGT | + |
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Preference number: 4 (lower is better) Translates to: TESSQNDAASLGIQSNQYRCPRR*TAEGHR Trigger: ACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCG...GTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR CAA 72 bp | TTAAATCCCAGTACTTCAGAGGCAGAGGCTAGGCCTTaGATATGGAGGCCGGCCTGGTCTACAGAGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LNPSTSEAEARP*IWRPAWSTEQV Trigger: AACTTGCTCTGTAGACCAGGCCGGCCTCCATATCAAAGGCCTAGCCTCTGCCTCTGAAGTACTGGGATTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119576.8 ENSMUST00000121339.2 |
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| CDS-3UTR GCA 90 bp | AAAGGATGCAACCCTGTATGGAGCACTAAGCTCTTTACTTTGCTGACTACTTTTCGATGTCCCCGACGCTaGACTGCTGAAGGGCATCGT | + |
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Preference number: 4 (lower is better) Translates to: KGCNPVWSTKLFTLLTTFRCPRR*TAEGHR Trigger: ACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCG...AAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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| CDS-3UTR CCA 90 bp | AACAAAGGTGCTCAGTCCAAGATTTCTTTGGGGGAGGCAATGAACAATGAGACATCCCCACAACCCATTTaGCGTGGACGGATGAACGGA | + |
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Preference number: 4 (lower is better) Translates to: NKGAQSKISLGEAMNNETSPQPI*RGRMNG Trigger: TCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGA...TGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000042191.12 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| CDS-3UTR CCA 90 bp | GCCGCATCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTGAATCCCCACAACCCATTTaGCGTGGACGGATGAACGGA | + |
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Preference number: 4 (lower is better) Translates to: AASLGIQSNQYLQFRESESPQPI*RGRMNG Trigger: TCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGA...TTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAATTCACGACCTCTGGAAGAACAAGCAGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWE*NSRPLEEQAVS Trigger: ACTGACTGCTTGTTCTTCCAGAGGTCGTGAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119576.8 |
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| CDS-3UTR CCA 90 bp | ACAGGAGAAACAGTAATGAAAACCATTGAGCAAAACACACAGACAGAAATGCCTTCCCCACAACCCATTTaGCGTGGACGGATGAACGGA | + |
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Preference number: 4 (lower is better) Translates to: TGETVMKTIEQNTQTEMPSPQPI*RGRMNG Trigger: TCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGA...AGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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| 3UTR CAA 72 bp | GGATGCAACCCTGTATGGAGCACTAAGCTCTTTACTTaGCTGACTACTTTTAATGTCACAGGAGAAACAGTA | + |
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Preference number: 4 (lower is better) Translates to: GCNPVWSTKLFT*LTTFNVTGETV Trigger: TACTGTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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| CDS-3UTR CAA 90 bp | GACTCCACAAAGCTGTCCTCTGGCTGCCACAGTGTGTGTGTGGTGGCACAGGTGTTCCCCACAACCCATTaGGCGTGGACGGATGAACGG | + |
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Preference number: 5 (lower is better) Translates to: DSTKLSSGCHSVCVVAQVFPTTH*AWTDER Trigger: CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAA...CACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000121339.2 |
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| CDS-3UTR CAA 90 bp | AAAACCATTGAGCAAAACACACAGACAGAAATGCCTCTGGCTCCTCCTTTCCTGTTCCCCACAACCCATTaGGCGTGGACGGATGAACGG | + |
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Preference number: 5 (lower is better) Translates to: KTIEQNTQTEMPLAPPFLFPTTH*AWTDER Trigger: CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAA...CAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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| CDS-3UTR CAA 90 bp | AAAGGATGCAACCCTGTATGGAGCACTAAGCTCTTTACTTTGCTGACTACTTTTTTCCCCACAACCCATTaGGCGTGGACGGATGAACGG | + |
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Preference number: 5 (lower is better) Translates to: KGCNPVWSTKLFTLLTTFFPTTH*AWTDER Trigger: CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAA...AAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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| CDS-3UTR CAA 90 bp | TCCTTAGGCATACAGAGTAATCAGTACCTTCAGTTCAGAGAATCTGAAAAAGGATTCCCCACAACCCATTaGGCGTGGACGGATGAACGG | + |
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Preference number: 5 (lower is better) Translates to: SLGIQSNQYLQFRESEKGFPTTH*AWTDER Trigger: CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAA...TCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGTATGGAGCACTAAGCTCTTTACTTTGCTGACTACTTTTAATGTCACATTCCCCACAACCCATTaGGCGTGGACGGATGAACGG | + |
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Preference number: 5 (lower is better) Translates to: NPVWSTKLFTLLTTFNVTFPTTH*AWTDER Trigger: CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAA...TGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000042191.12 ENSMUST00000118420.8 ENSMUST00000119576.8 ENSMUST00000119604.8 ENSMUST00000119985.2 ENSMUST00000121339.2 ENSMUST00000121813.8 |
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