Pregenerated sensors for MRPS16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049960Ensembl transcript IDs: ENSMUST00000061444.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCGGAGGACGCCTTCATTCCCGCCACGCAGCAGACAGAGGCAGGTaGCCAGCCTGGCACACAAAGTCAGTTCTGTTCCGGAGAAACCAA | + |
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Preference number: 1 (lower is better) Translates to: SGGRLHSRHAADRGR*PAWHTKSVLFRRNQ Trigger: TTGGTTTCTCCGGAACAGAACTGACTTTGTGTGCCAGGCTGGCCACCTGCCTCTGTCTGCTGCGTGGCGGGAATGAAGGCGTCCTCCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 90 bp | AAGCAGGAACGTACTGGATACCAGCAAACTGTAAAGCTGCCCGTGTaGCCAGGGCCTAACCCAAAGCCCAAACCTCCCTGTACCCCCTGC | + |
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Preference number: 1 (lower is better) Translates to: KQERTGYQQTVKLPV*PGPNPKPKPPCTPC Trigger: GCAGGGGGTACAGGGAGGTTTGGGCTTTGGGTTAGGCCCTGGTCACACGGGCAGCTTTACAGTTTGCTGGTATCCAGTACGTTCCTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 90 bp | AGGATGTGTATCTTTGGCAGCACAGAATCAGCGCCACTCACCTGCTaGAGTCACCTCACACAGCAATGGAAACTAATTGCACTGACCCAC | + |
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Preference number: 1 (lower is better) Translates to: RMCIFGSTESAPLTC*SHLTQQWKLIALTH Trigger: GTGGGTCAGTGCAATTAGTTTCCATTGCTGTGTGAGGTGACTGCAGCAGGTGAGTGGCGCTGATTCTGTGCTGCCAAAGATACACATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 90 bp | TCCTTTGTCTCTCCACCGTCCCATGTCCCTGTAGGATGCTGCTATTaGAGACTCTTTGCTTCCTGTCTAACTAGTACATGGGGTCTAAGG | + |
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Preference number: 1 (lower is better) Translates to: SFVSPPSHVPVGCCY*RLFASCLTSTWGLR Trigger: CCTTAGACCCCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCCTACAGGGACATGGGACGGTGGAGAGACAAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 90 bp | CAAAGGATGTGTATCTTTGGCAGCACAGAATCAGCGCCACTCACCTaGTGCAGTCACCTCACACAGCAATGGAAACTAATTGCACTGACC | + |
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Preference number: 1 (lower is better) Translates to: QRMCIFGSTESAPLT*CSHLTQQWKLIALT Trigger: GGTCAGTGCAATTAGTTTCCATTGCTGTGTGAGGTGACTGCAGCAGGTGAGTGGCGCTGATTCTGTGCTGCCAAAGATACACATCCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 90 bp | ACCAGCCAGGGTTGCAGAGAAAAACCCTGTCTTAAAGAAAACATTTaGATGAGCCAAGAACACTCGGCTGAGGACTCTGAAGCAGGAACG | + |
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Preference number: 1 (lower is better) Translates to: TSQGCREKPCLKENI*MSQEHSAEDSEAGT Trigger: CGTTCCTGCTTCAGAGTCCTCAGCCGAGTGTTCTTGGCTCATTCAAATGTTTTCTTTAAGACAGGGTTTTTCTCTGCAACCCTGGCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 90 bp | AGCAAACCTGTGATTCGTGTTTATAGCTGTAGAATCCCATGGTTCTaGGGCACTGTGAGGCAGACGGTGTGTTTGATTTCATACAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: SKPVIRVYSCRIPWF*GTVRQTVCLISYSL Trigger: CAGGCTGTATGAAATCAAACACACCGTCTGCCTCACAGTGCCCCAGAACCATGGGATTCTACAGCTATAAACACGAATCACAGGTTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 90 bp | CAACTAAACTTAGTTCCTCTCTTACCTACTTTCAAAGTTCCTTCATaGCCAGTGAAGGAAAACCAGCAGCCACACTGGATGGAGAGCAAC | + |
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Preference number: 1 (lower is better) Translates to: QLNLVPLLPTFKVPS*PVKENQQPHWMESN Trigger: GTTGCTCTCCATCCAGTGTGGCTGCTGGTTTTCCTTCACTGGGCATGAAGGAACTTTGAAAGTAGGTAAGAGAGGAACTAAGTTTAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 90 bp | AAGGCTATTAAAGCCCCAACTTTTCCATCAGAGTCTTTGTATACATaGGCTCATGTGTCAAGGAAACAGACAATACACAAGGCGATTGTC | + |
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Preference number: 1 (lower is better) Translates to: KAIKAPTFPSESLYT*AHVSRKQTIHKAIV Trigger: GACAATCGCCTTGTGTATTGTCTGTTTCCTTGACACATGAGCTCATGTATACAAAGACTCTGATGGAAAAGTTGGGGCTTTAATAGCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CAA 90 bp | TTTGACACAAGATGTCTGTGTTGTTTCTCCACTGTGCATGCCAGCTaGCCCGTGTCTGAGGATTCCTTTGTCTCTCCACCGTCCCATGTC | + |
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Preference number: 2 (lower is better) Translates to: FDTRCLCCFSTVHAS*PVSEDSFVSPPSHV Trigger: GACATGGGACGGTGGAGAGACAAAGGAATCCTCAGACACGGGCAAGCTGGCATGCACAGTGGAGAAACAACACAGACATCTTGTGTCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTGTAGGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACAAGTTTCACAGGCCCTTaGCTTTGCGGCCACGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: VPVGCCYCRLFASCLTSTSFTGP*LCGHGS Trigger: ACTGCCGTGGCCGCAAAGTCAAGGGCCTGTGAAACT...TGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCCTACAGGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR CCA 90 bp | CACTGTGAGGCAGACGGTGTGTTTGATTTCATACAGCCTGTCATTTACATACTGGCAGACAGAGGCAGGTaGCCAGCCTGGCACACAAAG | + |
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Preference number: 2 (lower is better) Translates to: HCEADGVFDFIQPVIYILADRGR*PAWHTK Trigger: CTTTGTGTGCCAGGCTGGCCACCTGCCTCTGTCTGC...CAGTATGTAAATGACAGGCTGTATGAAATCAAACACACCGTCTGCCTCACAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | GGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACATGGGGTCTAAAAGAAACCTCTGTCTaGCTCCTGCTCAGGCTATGC | + |
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Preference number: 2 (lower is better) Translates to: GCCYCRLFASCLTSTWGLKETSV*LLLRLC Trigger: GCATAGCCTGAGCAGGAGTCAGACAGAGGTTTCTTT...TAGACCCCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CAA 90 bp | AGGTCAGATACCACCTTAGGTGTCAGTCTTCACTTCCTACCTCATTaGACACAAGATGTCTGTGTTGTTTCTCCACTGTGCATGCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: RSDTTLGVSLHFLPH*TQDVCVVSPLCMPA Trigger: AGCTGGCATGCACAGTGGAGAAACAACACAGACATCTTGTGTCAAATGAGGTAGGAAGTGAAGACTGACACCTAAGGTGGTATCTGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | GGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACATGGGGTCTATCTTCACCTTTGGGATaGTCCAAGTGGTTAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GCCYCRLFASCLTSTWGLSSPLG*SKWLRK Trigger: CTTCCTTAACCACTTGGATCATCCCAAAGGTGAAGA...TAGACCCCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | CACTGTGAGGCAGACGGTGTGTTTGATTTCATACAGCCTGTCATTTACATACTGCACTGGCATTTAAAGTaGGCTTTGGAATGGCTGTCT | + |
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Preference number: 2 (lower is better) Translates to: HCEADGVFDFIQPVIYILHWHLK*ALEWLS Trigger: AGACAGCCATTCCAAAGCTCACTTTAAATGCCAGTG...CAGTATGTAAATGACAGGCTGTATGAAATCAAACACACCGTCTGCCTCACAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR CCA 90 bp | TTTGATTTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGGGCAGGTGGCCAGCCTaGCACACAAAGTCAGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: FDFIQPVIYILNSQYLNTGRWPA*HTKSVL Trigger: CAGAACTGACTTTGTGTGCCAGGCTGGCCACCTGCC...CGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAAATCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTGTAGGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACAGAGTCTTTGTATACATaGGCTCATGTGTCAAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: VPVGCCYCRLFASCLTSTESLYT*AHVSRK Trigger: TTTCCTTGACACATGAGCTCATGTATACAAAGACTC...TGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCCTACAGGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR GCA 90 bp | CACTGTGAGGCAGACGGTGTGTTTGATTTCATACAGCCTGTCATTTACATACTGCAACACAAAACTTTATaGACAAGTTTCACAGGCCCT | + |
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Preference number: 2 (lower is better) Translates to: HCEADGVFDFIQPVIYILQHKTL*TSFTGP Trigger: AGGGCCTGTGAAACTTGTGCATAAAGTTTTGTGTTG...CAGTATGTAAATGACAGGCTGTATGAAATCAAACACACCGTCTGCCTCACAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR GCA 90 bp | TTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGACTCTAGAAGCATTTGGGCCATaGATAGAAGCCCTCCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: FIQPVIYILNSQYLNTTLEAFGP*IEALPV Trigger: TACAGGGAGGGCTTCTATGCATGGCCCAAATGCTTC...TAGAGTCGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | TTTGATTTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGTGGGGTCTAAGGATGTaGACTCAGTACCTCAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: FDFIQPVIYILNSQYLNTWGLRM*TQYLRA Trigger: AGCTCTGAGGTACTGAGTTCACATCCTTAGACCCCA...CGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAAATCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | GCTCATGTGTCAAGGAAACAGACAATACACAAGGCGATTGTCTTCTTCACCTTTCTTAAAGAAAACATTTaGATGAGCCAAGAACACTCG | + |
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Preference number: 2 (lower is better) Translates to: AHVSRKQTIHKAIVFFTFLKENI*MSQEHS Trigger: CGAGTGTTCTTGGCTCATTCAAATGTTTTCTTTAAG...AAAGGTGAAGAAGACAATCGCCTTGTGTATTGTCTGTTTCCTTGACACATGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | TTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGACTCTAACTTCCTACCTCATTTaGCACAAGATGTCTGTGTTG | + |
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Preference number: 2 (lower is better) Translates to: FIQPVIYILNSQYLNTTLTSYLI*HKMSVL Trigger: CAACACAGACATCTTGTGTCAAATGAGGTAGGAAGT...TAGAGTCGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR CCA 90 bp | GCTCATGTGTCAAGGAAACAGACAATACACAAGGCGATTGTCTTCTTCACCTTTAGTTCAAGGTCAGGCTaGTGTATAGATTACATAAAA | + |
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Preference number: 2 (lower is better) Translates to: AHVSRKQTIHKAIVFFTFSSRSG*CIDYIK Trigger: TTTTATGTAATCTATACACCAGCCTGACCTTGAACT...AAAGGTGAAGAAGACAATCGCCTTGTGTATTGTCTGTTTCCTTGACACATGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR TCA 90 bp | TTTGATTTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGAAGAAAACATTTGAATaGGCCAAGAACACTCGGCTG | + |
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Preference number: 2 (lower is better) Translates to: FDFIQPVIYILNSQYLNTKKTFE*AKNTRL Trigger: CAGCCGAGTGTTCTTGGCTCATTCAAATGTTTTCTT...CGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAAATCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCACAACTTTTAAGAATGCCTTTTATCTCAAAGGATGTGTATCTTTGGCATTCAAAGTTCCTTCATaGCCAGTGAAGGAAAACCAG | + |
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Preference number: 2 (lower is better) Translates to: QSTTFKNAFYLKGCVSLAFKVPS*PVKENQ Trigger: CTGGTTTTCCTTCACTGGGCATGAAGGAACTTTGAA...TGCCAAAGATACACATCCTTTGAGATAAAAGGCATTCTTAAAAGTTGTGCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | CGCCTTCATTCCCGCCACGCAGCAGACAGAGGCAGGTaGCCAGCCTGGCACACAAAGTCAGTTCTGTTCCGG | + |
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Preference number: 3 (lower is better) Translates to: RLHSRHAADRGR*PAWHTKSVLFR Trigger: CCGGAACAGAACTGACTTTGTGTGCCAGGCTGGCCACCTGCCTCTGTCTGCTGCGTGGCGGGAATGAAGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | GGGCCTAACCCAAAGCCCAAACCTCCCTGTACCCCCTaGATGCCACAAGGTAAGGTAGGAAAGCCAAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: GPNPKPKPPCTP*MPQGKVGKPSR Trigger: CCTGCTTGGCTTTCCTACCTTACCTTGTGGCATGCAGGGGGTACAGGGAGGTTTGGGCTTTGGGTTAGGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | CGTACTGGATACCAGCAAACTGTAAAGCTGCCCGTGTaGCCAGGGCCTAACCCAAAGCCCAAACCTCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: RTGYQQTVKLPV*PGPNPKPKPPC Trigger: ACAGGGAGGTTTGGGCTTTGGGTTAGGCCCTGGTCACACGGGCAGCTTTACAGTTTGCTGGTATCCAGTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | TTGTTTCTCCACTGTGCATGCCAGCTTGCCCGTGTCTaGGGATTCCTTTGTCTCTCCACCGTCCCATGTCCC | + |
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Preference number: 3 (lower is better) Translates to: LFLHCACQLARV*GFLCLSTVPCP Trigger: GGGACATGGGACGGTGGAGAGACAAAGGAATCCTCAGACACGGGCAAGCTGGCATGCACAGTGGAGAAACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | AGCATAGCCTCCCTCATCTGTAACCGTGGATCTGACTaGCCCACAGCTGTGATACAGAACACACAGCGACAG | + |
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Preference number: 3 (lower is better) Translates to: SIASLICNRGSD*PTAVIQNTQRQ Trigger: CTGTCGCTGTGTGTTCTGTATCACAGCTGTGGGTCAGTCAGATCCACGGTTACAGATGAGGGAGGCTATGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | GCGCCACTCACCTGCTGCAGTCACCTCACACAGCAATaGAAACTAATTGCACTGACCCACCCATCCTATCAT | + |
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Preference number: 3 (lower is better) Translates to: APLTCCSHLTQQ*KLIALTHPSYH Trigger: ATGATAGGATGGGTGGGTCAGTGCAATTAGTTTCCATTGCTGTGTGAGGTGACTGCAGCAGGTGAGTGGCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR CAA 90 bp | GGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACATGGGGTCTACCACACCAGCCAGGGTaGCAGAGAAAAACCCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: GCCYCRLFASCLTSTWGLPHQPG*QRKTLS Trigger: AGACAGGGTTTTTCTCTGCAACCCTGGCTGGTGTGG...TAGACCCCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | GGGATGATCCAAGTGGTTAAGGAAGCATTTGGGCCATaGATAGAAGCCCTCCCTGTAATCCTAGCACTCAGA | + |
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Preference number: 3 (lower is better) Translates to: GMIQVVKEAFGP*IEALPVILALR Trigger: TCTGAGTGCTAGGATTACAGGGAGGGCTTCTATGCATGGCCCAAATGCTTCCTTAACCACTTGGATCATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | TCTCCACCGTCCCATGTCCCTGTAGGATGCTGCTATTaGAGACTCTTTGCTTCCTGTCTAACTAGTACATGG | + |
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Preference number: 3 (lower is better) Translates to: SPPSHVPVGCCY*RLFASCLTSTW Trigger: CCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCCTACAGGGACATGGGACGGTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | ATCTTTGGCAGCACAGAATCAGCGCCACTCACCTGCTaGAGTCACCTCACACAGCAATGGAAACTAATTGCA | + |
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Preference number: 3 (lower is better) Translates to: IFGSTESAPLTC*SHLTQQWKLIA Trigger: TGCAATTAGTTTCCATTGCTGTGTGAGGTGACTGCAGCAGGTGAGTGGCGCTGATTCTGTGCTGCCAAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | CATTTGACACAAGATGTCTGTGTTGTTTCTCCACTGTaGATGCCAGCTTGCCCGTGTCTGAGGATTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: HLTQDVCVVSPL*MPACPCLRIPL Trigger: CAAAGGAATCCTCAGACACGGGCAAGCTGGCATGCACAGTGGAGAAACAACACAGACATCTTGTGTCAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | AAACCTGTGATTCGTGTTTATAGCTGTAGAATCCCATaGTTCTGGGGCACTGTGAGGCAGACGGTGTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: KPVIRVYSCRIP*FWGTVRQTVCL Trigger: CAAACACACCGTCTGCCTCACAGTGCCCCAGAACCATGGGATTCTACAGCTATAAACACGAATCACAGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | GTGATTCGTGTTTATAGCTGTAGAATCCCATGGTTCTaGGGCACTGTGAGGCAGACGGTGTGTTTGATTTCA | + |
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Preference number: 3 (lower is better) Translates to: VIRVYSCRIPWF*GTVRQTVCLIS Trigger: TGAAATCAAACACACCGTCTGCCTCACAGTGCCCCAGAACCATGGGATTCTACAGCTATAAACACGAATCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | CAATACACAAGGCGATTGTCTTCTTCACCTTTGGGATaGTCCAAGTGGTTAAGGAAGCATTTGGGCCATGCA | + |
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Preference number: 3 (lower is better) Translates to: QYTRRLSSSPLG*SKWLRKHLGHA Trigger: TGCATGGCCCAAATGCTTCCTTAACCACTTGGATCATCCCAAAGGTGAAGAAGACAATCGCCTTGTGTATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | TGCACATTCATGTGTTGGTTAGAGTGGGCATGTGCATaGTTTAACACATGGAGGTCAGATACCACCTTAGGT | + |
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Preference number: 3 (lower is better) Translates to: CTFMCWLEWACA*FNTWRSDTTLG Trigger: ACCTAAGGTGGTATCTGACCTCCATGTGTTAAAGCATGCACATGCCCACTCTAACCAACACATGAATGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | TTAGTTCCTCTCTTACCTACTTTCAAAGTTCCTTCATaGCCAGTGAAGGAAAACCAGCAGCCACACTGGATG | + |
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Preference number: 3 (lower is better) Translates to: LVPLLPTFKVPS*PVKENQQPHWM Trigger: CATCCAGTGTGGCTGCTGGTTTTCCTTCACTGGGCATGAAGGAACTTTGAAAGTAGGTAAGAGAGGAACTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | TCTGTGTATGCGTGCACATTCATGTGTTGGTTAGAGTaGGCATGTGCATGCTTTAACACATGGAGGTCAGAT | + |
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Preference number: 3 (lower is better) Translates to: SVYACTFMCWLE*ACACFNTWRSD Trigger: ATCTGACCTCCATGTGTTAAAGCATGCACATGCCCACTCTAACCAACACATGAATGTGCACGCATACACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CCA 72 bp | ATAGACTGTTCTGTGTATGCGTGCACATTCATGTGTTaGTTAGAGTGGGCATGTGCATGCTTTAACACATGG | + |
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Preference number: 3 (lower is better) Translates to: IDCSVYACTFMC*LEWACACFNTW Trigger: CCATGTGTTAAAGCATGCACATGCCCACTCTAACCAACACATGAATGTGCACGCATACACAGAACAGTCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | GCTTCCTGTCTAACTAGTACATGGGGTCTAAGGATGTaGACTCAGTACCTCAGAGCTAAGGTAAAAATAAAG | + |
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Preference number: 3 (lower is better) Translates to: ASCLTSTWGLRM*TQYLRAKVKIK Trigger: CTTTATTTTTACCTTAGCTCTGAGGTACTGAGTTCACATCCTTAGACCCCATGTACTAGTTAGACAGGAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR TCA 72 bp | AAAGCCCCAACTTTTCCATCAGAGTCTTTGTATACATaGGCTCATGTGTCAAGGAAACAGACAATACACAAG | + |
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Preference number: 3 (lower is better) Translates to: KAPTFPSESLYT*AHVSRKQTIHK Trigger: CTTGTGTATTGTCTGTTTCCTTGACACATGAGCTCATGTATACAAAGACTCTGATGGAAAAGTTGGGGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR GCA 72 bp | TTAGATGACTTCATCTGGGATGAATCCCTCAGTCCATaGAGGAATAGCCTGTATCAATCAAAATACACAAAG | + |
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Preference number: 3 (lower is better) Translates to: LDDFIWDESLSP*RNSLYQSKYTK Trigger: CTTTGTGTATTTTGATTGATACAGGCTATTCCTGCATGGACTGAGGGATTCATCCCAGATGAAGTCATCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR-3UTR CAA 90 bp | TTTGATTTCATACAGCCTGTCATTTACATACTGAACTCACAATACCTAAACACGAGTTTGAATCCCAAGTaGTTCTCAAGTTATGTTTCC | + |
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Preference number: 3 (lower is better) Translates to: FDFIQPVIYILNSQYLNTSLNPK*FSSYVS Trigger: GGAAACATAACTTGAGAACAACTTGGGATTCAAACT...CGTGTTTAGGTATTGTGAGTTCAGTATGTAAATGACAGGCTGTATGAAATCAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CAA 72 bp | AGATGTCTGTGTTGTTTCTCCACTGTGCATGCCAGCTaGCCCGTGTCTGAGGATTCCTTTGTCTCTCCACCG | + |
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Preference number: 4 (lower is better) Translates to: RCLCCFSTVHAS*PVSEDSFVSPP Trigger: CGGTGGAGAGACAAAGGAATCCTCAGACACGGGCAAGCTGGCATGCACAGTGGAGAAACAACACAGACATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR TCA 90 bp | AACACAAAACTTTATGCACAAGTTTCACAGGCCCTTGACTTTGCGGCCACGGCATGTCTCTTTGGCCTCTaGCTCTGCTTTCTGAGACGC | + |
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Preference number: 4 (lower is better) Translates to: NTKLYAQVSQALDFAATACLFGL*LCFLRR Trigger: GCGTCTCAGAAAGCAGAGTCAGAGGCCAAAGAGACA...TGCCGTGGCCGCAAAGTCAAGGGCCTGTGAAACTTGTGCATAAAGTTTTGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR CCA 90 bp | GAGCTCATGTGTCAAGGAAACAGACAATACACAAGGCGATTGTCTTCTTCACCTCAAATCGGCCATCCCTaGGGCACTTGTTGTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: ELMCQGNRQYTRRLSSSPQIGHP*GTCCEQ Trigger: CTGCTCACAACAAGTGCCCCAGGGATGGCCGATTTG...AGGTGAAGAAGACAATCGCCTTGTGTATTGTCTGTTTCCTTGACACATGAGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR TCA 90 bp | AAACCTGTGATTCGTGTTTATAGCTGTAGAATCCCATGGTTCTGGGGCACTGTGTCTGACTCTGCTTTCTaGGACGCTAAGAGGACCTCT | + |
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Preference number: 4 (lower is better) Translates to: KPVIRVYSCRIPWFWGTVSDSAF*DAKRTS Trigger: AGAGGTCCTCTTAGCGTCTCAGAAAGCAGAGTCAGA...CACAGTGCCCCAGAACCATGGGATTCTACAGCTATAAACACGAATCACAGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR TCA 90 bp | GGATGCTGCTATTGCAGACTCTTTGCTTCCTGTCTAACTAGTACATGGGGTCTAACTAGTTTTTCTCCGTaGCTGTTGGGTAGTGGATCA | + |
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Preference number: 4 (lower is better) Translates to: GCCYCRLFASCLTSTWGLTSFSP*LLGSGS Trigger: TGATCCACTACCCAACAGTCACGGAGAAAAACTAGT...TAGACCCCATGTACTAGTTAGACAGGAAGCAAAGAGTCTGCAATAGCAGCATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| 3UTR CAA 72 bp | ACCACCTTAGGTGTCAGTCTTCACTTCCTACCTCATTaGACACAAGATGTCTGTGTTGTTTCTCCACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TTLGVSLHFLPH*TQDVCVVSPLC Trigger: GCACAGTGGAGAAACAACACAGACATCTTGTGTCAAATGAGGTAGGAAGTGAAGACTGACACCTAAGGTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR TCA 90 bp | CAAAGCACAACTTTTAAGAATGCCTTTTATCTCAAAGGATGTGTATCTTTGGCAGGATACGGTCCAGGTTaGGGGCAACTAGTTTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: QSTTFKNAFYLKGCVSLAGYGPG*GQLVFL Trigger: GAGAAAAACTAGTTGCCCTCAACCTGGACCGTATCC...TGCCAAAGATACACATCCTTTGAGATAAAAGGCATTCTTAAAAGTTGTGCTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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| CDS-3UTR TCA 90 bp | CAAAGCACAACTTTTAAGAATGCCTTTTATCTCAAAGGATGTGTATCTTTGGCAGTCTCTCAGCATTGGTaGTCATCATTGGATGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: QSTTFKNAFYLKGCVSLAVSQHW*SSLDEG Trigger: CCCTTCATCCAATGATGATCACCAATGCTGAGAGAC...TGCCAAAGATACACATCCTTTGAGATAAAAGGCATTCTTAAAAGTTGTGCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061444.5 |
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