Pregenerated sensors for MRPS12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045948Ensembl transcript IDs: ENSMUST00000056078.9, ENSMUST00000165004.2, ENSMUST00000171183.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTaGACATGGACGCACAGGGGTACTGCCTTCCAATTCACCTTCAGT | + |
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Preference number: 1 (lower is better) Translates to: LLQTPSQHMRSTCKH*TWTHRGTAFQFTFS Trigger: ACTGAAGGTGAATTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR GCA 90 bp | CATGAGGTCAACCTGCAAACACTGAACATGGACGCACAGGGGTACTaGCTTCCAATTCACCTTCAGTACTCTTGCAGGTTAACAACAGTC | + |
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Preference number: 1 (lower is better) Translates to: HEVNLQTLNMDAQGY*LPIHLQYSCRLTTV Trigger: GACTGTTGTTAACCTGCAAGAGTACTGAAGGTGAATTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAGACGCACAGGGGTACTaGCTTCCAATTCACCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: PEDIFITNPIPAHEVNLQDAQGY*LPIHLQ Trigger: CTGAAGGTGAATTGGAAGGCAGTACCCCTGTGCGTC...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACAGACGCACAGGGGTACTaGCTTCCAATTCACCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: EDIFITNPIPAHEVNLQTDAQGY*LPIHLQ Trigger: CTGAAGGTGAATTGGAAGGCAGTACCCCTGTGCGTC...TGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR GCA 90 bp | TTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGCACCTTCAGTACTCTTaGAGGTTAACAACAGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: FITNPIPAHEVNLQTLNMHLQYS*RLTTVL Trigger: CAAGACTGTTGTTAACCTGCAAGAGTACTGAAGGTG...CATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAACACCTTCAGTACTCTTaGAGGTTAACAACAGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: PEDIFITNPIPAHEVNLQHLQYS*RLTTVL Trigger: CAAGACTGTTGTTAACCTGCAAGAGTACTGAAGGTG...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR TCA 72 bp | ACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTaGACATGGACGCACAGGGGTACTGCCTTCCAATTC | + |
|
Preference number: 3 (lower is better) Translates to: TPSQHMRSTCKH*TWTHRGTAFQF Trigger: GAATTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR TCA 72 bp | AGGTTAACAACAGTCTTGCTGAATCACAGTAAGATTTaGGCCCAAGACCCGGGAGTAGGAAGAACCCGTTTC | + |
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Preference number: 3 (lower is better) Translates to: RLTTVLLNHSKI*AQDPGVGRTRF Trigger: GAAACGGGTTCTTCCTACTCCCGGGTCTTGGGCTCAAATCTTACTGTGATTCAGCAAGACTGTTGTTAACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAAGGTTAACAACAGTCTaGCTGAATCACAGTAAGATT | + |
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Preference number: 3 (lower is better) Translates to: PEDIFITNPIPAHEVNLQRLTTV*LNHSKI Trigger: AATCTTACTGTGATTCAGCAAGACTGTTGTTAACCT...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| 3UTR-3UTR CAA 90 bp | TCACAACCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACAGGTTAACAACAGTCTaGCTGAATCACAGTAAGATT | + |
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Preference number: 3 (lower is better) Translates to: SQPEDIFITNPIPAHEVNRLTTV*LNHSKI Trigger: AATCTTACTGTGATTCAGCAAGACTGTTGTTAACCT...GTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR GCA 90 bp | CCAGCACATGAGGTCAACCTGCAAACACTGAACATGGACGCACAGGGGTACTGCCAGGCAGGTCCTGGGTaGGACCACCCTCCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PAHEVNLQTLNMDAQGYCQAGPG*DHPPRG Trigger: TCCTCGTGGAGGGTGGTCGCACCCAGGACCTGCCTG...GCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | GCACATGAGGTCAACCTGCAAACACTGAACATGGACGCACAGGGGTACTGCCTTACCCCAGGCAGGTCCTaGGTGCGACCACCCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: AHEVNLQTLNMDAQGYCLTPGRS*VRPPST Trigger: CGTGGAGGGTGGTCGCACCCAGGACCTGCCTGGGGT...AAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR TCA 90 bp | ACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGGACGCATCCACGAGGACCACGTaGTGCTCCTGCAGGGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: TNPIPAHEVNLQTLNMDASTRTT*CSCRVW Trigger: CCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGA...TGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | ACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGGACGCAGGCAGCACTTGCGGTTaGCGGAGTTGGGCTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: TNPIPAHEVNLQTLNMDAGSTCG*RSWASS Trigger: CGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCC...TGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACCCCAGGCAGGTCCTaGGTGCGACCACCCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: PEDIFITNPIPAHEVNLQTPGRS*VRPPST Trigger: CGTGGAGGGTGGTCGCACCCAGGACCTGCCTGGGGT...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR GCA 90 bp | GATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGCAGGCAGGTCCTGGGTaGGACCACCCTCCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: DIFITNPIPAHEVNLQTLQAGPG*DHPPRG Trigger: TCCTCGTGGAGGGTGGTCGCACCCAGGACCTGCCTG...CAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR TCA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAATCCACGAGGACCACGTaGTGCTCCTGCAGGGTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: PEDIFITNPIPAHEVNLQSTRTT*CSCRVW Trigger: CCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGA...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | TTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGGGCAGCACTTGCGGTTaGCGGAGTTGGGCTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: FITNPIPAHEVNLQTLNMGSTCG*RSWASS Trigger: CGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCC...CATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | CATCACAACCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCATGCTCCTGCAGGGTGTaGCCCTCCCCGGGGATGAAG | + |
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Preference number: 4 (lower is better) Translates to: HHNLKIYLLQTPSQHMRSCSCRV*PSPGMK Trigger: CTTCATCCCCGGGGAGGGCCACACCCTGCAGGAGCA...TGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | GAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACATGCGGTTGGCGGAGTTaGGCTTCTTCGGCTTTCGGA | + |
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Preference number: 4 (lower is better) Translates to: EDIFITNPIPAHEVNLQTCGWRS*ASSAFG Trigger: TCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCA...TGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CCA 90 bp | TCACAACCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACTGCGGTTGGCGGAGTTaGGCTTCTTCGGCTTTCGGA | + |
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Preference number: 4 (lower is better) Translates to: SQPEDIFITNPIPAHEVNCGWRS*ASSAFG Trigger: TCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCA...GTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS CCA 90 bp | CGGTGCATCTGGTTCAGGGTGGCCATGGAACGGGCGGCCCAGAGCTaGGGAGCGAGGGCTAGGCCTGATGTCTGGGCAATGTCTAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: RCIWFRVAMERAAQS*GARARPDVWAMSRN Trigger: GTTCCTAGACATTGCCCAGACATCAGGCCTAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165004.2 |
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| CDS TCA 90 bp | GGCAGCACTTGCGGTTGGCGGAGTTGGGCTTCTTCGGCTTTCGGATaGATGTGCGCAACACCACACCCTTCAGCTGGGGCCGGCCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GSTCGWRSWASSAFG*MCATPHPSAGAGPL Trigger: CAGAGGGCCGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CCA 90 bp | TTCTTCGGCTTTCGGATGAATGTGCGCAACACCACACCCTTCAGCTaGGGCCGGCCCTCTGTGGGGCCCAGACGCTTAGGGGGTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: FFGFRMNVRNTTPFS*GRPSVGPRRLGGSF Trigger: GAAGGAACCCCCTAAGCGTCTGGGCCCCACAGAGGGCCGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | CCAGCACATGAGGTCAACCTGCAAACACTGAACATGGACGCACAGGGGTACTGCTTGCGGTTGGCGGAGTaGGGCTTCTTCGGCTTTCGG | + |
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Preference number: 5 (lower is better) Translates to: PAHEVNLQTLNMDAQGYCLRLAE*GFFGFR Trigger: CCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAA...GCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | CCAGCACATGAGGTCAACCTGCAAACACTGAACATGGACGCACAGGGGTACTGCTTGCCCCTCACAACTTaGAGTTTGACCCCAGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PAHEVNLQTLNMDAQGYCLPLTT*SLTPGR Trigger: CCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAA...GCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | CAACCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCGGCAGCACTTGCGGTaGGCGGAGTTGGGCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: QPEDIFITNPIPAHEVNLRQHLR*AELGFF Trigger: GAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCG...CAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | GATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGTTGCGGTTGGCGGAGTaGGGCTTCTTCGGCTTTCGG | + |
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Preference number: 5 (lower is better) Translates to: DIFITNPIPAHEVNLQTLLRLAE*GFFGFR Trigger: CCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAA...CAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | CATCACAACCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCACGGCAGCACTTGCGGTaGGCGGAGTTGGGCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: HHNLKIYLLQTPSQHMRSRQHLR*AELGFF Trigger: GAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCG...TGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | TTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGAAGCAGACAGCCTCTTaGCCTGTGCTGAGGCGGACT | + |
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Preference number: 5 (lower is better) Translates to: FITNPIPAHEVNLQTLNMKQTAS*PVLRRT Trigger: AGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTT...CATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | TTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACACTGAACATGCTCACAACTTTGAGTTaGACCCCAGGCAGGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: FITNPIPAHEVNLQTLNMLTTLS*TPGRSW Trigger: CCAGGACCTGCCTGGGGTCAAACTCAAAGTTGTGAG...CATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | CCTGAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAACTCACAACTTTGAGTTaGACCCCAGGCAGGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: PEDIFITNPIPAHEVNLQLTTLS*TPGRSW Trigger: CCAGGACCTGCCTGGGGTCAAACTCAAAGTTGTGAG...TTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS-3UTR CAA 90 bp | GAAGATATATTTATTACAAACCCCATCCCAGCACATGAGGTCAACCTGCAAACATTGCCCCTCACAACTTaGAGTTTGACCCCAGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: EDIFITNPIPAHEVNLQTLPLTT*SLTPGR Trigger: CCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAA...TGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS TCA 72 bp | AGGTCCTGGGTGCGACCACCCTCCACGAGGACCACGTaGTGCTCCTGCAGGGTGTGGCCCTCCCCGGGGATG | + |
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Preference number: 6 (lower is better) Translates to: RSWVRPPSTRTT*CSCRVWPSPGM Trigger: CATCCCCGGGGAGGGCCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGAGGGTGGTCGCACCCAGGACCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CCA 72 bp | GGGGGCCTAAGCGGTGCATCTGGTTCAGGGTGGCCATaGAACGGGCGGCCCAGAGCTGGGGAGCGAGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: GGLSGASGSGWP*NGRPRAGERGL Trigger: TAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCGCTTAGGCCCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CCA 72 bp | CCTTCCGGGGGCCTAAGCGGTGCATCTGGTTCAGGGTaGCCATGGAACGGGCGGCCCAGAGCTGGGGAGCGA | + |
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Preference number: 6 (lower is better) Translates to: PSGGLSGASGSG*PWNGRPRAGER Trigger: TCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCGCTTAGGCCCCCGGAAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 90 bp | TCCTGCAGGGTGTGGCCCTCCCCGGGGATGAAGCAGACAGCCTCTTaGCCTGTGCTGAGGCGGACTCGGCAGCACTTGCGGTTGGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SCRVWPSPGMKQTAS*PVLRRTRQHLRLAE Trigger: CTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTTCATCCCCGGGGAGGGCCACACCCTGCAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CCA 72 bp | TGGTTCAGGGTGGCCATGGAACGGGCGGCCCAGAGCTaGGGAGCGAGGGCTAGGCCTGATGTCTGGGCAATG | + |
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Preference number: 6 (lower is better) Translates to: WFRVAMERAAQS*GARARPDVWAM Trigger: CATTGCCCAGACATCAGGCCTAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCTGAACCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165004.2 |
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| CDS CAA 72 bp | GCCTCTTTGCCTGTGCTGAGGCGGACTCGGCAGCACTaGCGGTTGGCGGAGTTGGGCTTCTTCGGCTTTCGG | + |
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Preference number: 6 (lower is better) Translates to: ASLPVLRRTRQH*RLAELGFFGFR Trigger: CCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 90 bp | TTGCCTGTGCTGAGGCGGACTCGGCAGCACTTGCGGTTGGCGGAGTaGGGCTTCTTCGGCTTTCGGATGAATGTGCGCAACACCACACCC | + |
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Preference number: 6 (lower is better) Translates to: LPVLRRTRQHLRLAE*GFFGFRMNVRNTTP Trigger: GGGTGTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 72 bp | CTGAGGCGGACTCGGCAGCACTTGCGGTTGGCGGAGTaGGGCTTCTTCGGCTTTCGGATGAATGTGCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LRRTRQHLRLAE*GFFGFRMNVRN Trigger: GTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 72 bp | TGGCCGCAGTCATACTTGCCCCTCACAACTTTGAGTTaGACCCCAGGCAGGTCCTGGGTGCGACCACCCTCC | + |
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Preference number: 6 (lower is better) Translates to: WPQSYLPLTTLS*TPGRSWVRPPS Trigger: GGAGGGTGGTCGCACCCAGGACCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTATGACTGCGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS CAA 90 bp | ACAGCCTCTTTGCCTGTGCTGAGGCGGACTCGGCAGCACTTGCGGTaGGCGGAGTTGGGCTTCTTCGGCTTTCGGATGAATGTGCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: TASLPVLRRTRQHLR*AELGFFGFRMNVRN Trigger: GTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 72 bp | TTGCCTGTGCTGAGGCGGACTCGGCAGCACTTGCGGTaGGCGGAGTTGGGCTTCTTCGGCTTTCGGATGAAT | + |
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Preference number: 6 (lower is better) Translates to: LPVLRRTRQHLR*AELGFFGFRMN Trigger: ATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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| CDS CAA 72 bp | TGCACGTGGCCGCAGTCATACTTGCCCCTCACAACTTaGAGTTTGACCCCAGGCAGGTCCTGGGTGCGACCA | + |
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Preference number: 6 (lower is better) Translates to: CTWPQSYLPLTT*SLTPGRSWVRP Trigger: TGGTCGCACCCAGGACCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTATGACTGCGGCCACGTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056078.9 ENSMUST00000171183.2 |
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| CDS CAA 90 bp | AAGCAGACAGCCTCTTTGCCTGTGCTGAGGCGGACTCGGCAGCACTaGCGGTTGGCGGAGTTGGGCTTCTTCGGCTTTCGGATGAATGTG | + |
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Preference number: 6 (lower is better) Translates to: KQTASLPVLRRTRQH*RLAELGFFGFRMNV Trigger: CACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056078.9 ENSMUST00000165004.2 ENSMUST00000171183.2 |
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