Pregenerated sensors for MRPS11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030611Ensembl transcript IDs: ENSMUST00000032840.5, ENSMUST00000133553.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCAAGGAGGGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTaGGCCTTCTGTAGGATCCACAGGAGTCAAGACCTGAGGCCAGGT | + |
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Preference number: 1 (lower is better) Translates to: PQGGLENSRLQRLPQ*AFCRIHRSQDLRPG Trigger: ACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCCCTCCTTGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR CCA 90 bp | CAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTaGCACTTCCAGCCTCGGTGCGAGGAGAGGAGTGTTTCCCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: QWAWGSHSLMSKRPA*HFQPRCEERSVSPR Trigger: CCTTGGGGAAACACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR TCA 90 bp | GGCTTCCACAGTGGGCCTTCTGTAGGATCCACAGGAGTCAAGACCTaGGGCCAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCG | + |
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Preference number: 1 (lower is better) Translates to: GFHSGPSVGSTGVKT*GQVQVQAPFPSQPS Trigger: CGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAAGGCCCACTGTGGAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR GCA 90 bp | CACTACGACTCTGATGTGGGTCACTCCCTTTCCTGTGGCTTTTGCTaGGGCAGCTATGCCTGCTGTCTGTGCGGCGATGCCGGTGCCCTT | + |
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Preference number: 1 (lower is better) Translates to: HYDSDVGHSLSCGFC*GSYACCLCGDAGAL Trigger: AAGGGCACCGGCATCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAGGAAAGGGAGTGACCCACATCAGAGTCGTAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR GCA 90 bp | TTTCACTACGACTCTGATGTGGGTCACTCCCTTTCCTGTGGCTTTTaGTGCGGCAGCTATGCCTGCTGTCTGTGCGGCGATGCCGGTGCC | + |
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Preference number: 1 (lower is better) Translates to: FHYDSDVGHSLSCGF*CGSYACCLCGDAGA Trigger: GGCACCGGCATCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAGGAAAGGGAGTGACCCACATCAGAGTCGTAGTGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCGAGCCTTCCGGGGTCCTGTCTGTGCGGCGATaGCGGTGCCCTTCTTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: PGPSAGSLPVTAFEPSGVLSVRR*RCPSWH Trigger: ATGCCAAGAAGGGCACCGGCATCGCCGCACAGACAG...GACCCCGGAAGGCTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGCTCCCTTCCCGTCACAGCCTTCGAGCCTTCCGGGGTCGGCAGCCATTGTGTTGCTGCGGCAGCTATaGCTGCTGTCTGTGCGGCGA | + |
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Preference number: 2 (lower is better) Translates to: QAPFPSQPSSLPGSAAIVLLRQL*LLSVRR Trigger: TCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAA...CACAATGGCTGCCGACCCCGGAAGGCTCGAAGGCTGTGACGGGAAGGGAGCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCGAGCCTTCCGGGGTCGTCCAAGAGGCCAGCTTaGCACTTCCAGCCTCGGTGC | + |
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Preference number: 2 (lower is better) Translates to: QVQVQAPFPSQPSSLPGSSKRPA*HFQPRC Trigger: GCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGA...CGACCCCGGAAGGCTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | AGACCTGAGGCCAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCGAGCCGTGCGGCGATGCCGGTaGCCTTCTTGGCATTGCGAA | + |
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Preference number: 2 (lower is better) Translates to: RPEARSKCRLPSRHSLRAVRRCR*PSWHCE Trigger: TTCGCAATGCCAAGAAGGGCACCGGCATCGCCGCAC...GGCTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR CAA 90 bp | ACAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTaGGCACTTCCAGCCTCGGTGCGAGGAGAGGAGTGTTTCCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: TVGLGFPLPHVQEAS*ALPASVRGEECFPK Trigger: CTTGGGGAAACACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | TCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGCGAGGAGAGGAGTGTGCGAAAGCCTTCTGTaGCACAGGAGGCGCGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SCPRGQLGTSSLGARRGVCESLL*HRRRGP Trigger: TGGCCCGCGCCTCCTGTGGCACAGAAGGCTTTCGCA...CACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR CCA 90 bp | GGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTGGGCCTTCTGTAGGATCCAGAGCTCTCCTGTCCTaGAACCGGAGGGTAAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: GSRTAGSSGFHSGPSVGSRALLS*NRRVKA Trigger: GGCCTTTACCCTCCGGTTCCAGGACAGGAGAGCTCT...GGATCCTACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTGGCTTTTGCTGCGGCAGCTATGCCTGCTGTCTGTGCGGCGATGCCGGTGCCTCAAACTTCATCCCTaGCCACTGCAGAGAGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: LWLLLRQLCLLSVRRCRCLKLHP*PLQRAL Trigger: GAGAGCTCTCTGCAGTGGGCAGGGATGAAGTTTGAG...GCACCGGCATCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR GCA 90 bp | ACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGCGAGGAGAGGTTGCTTTAATGTGTaGAATTGGGACGTCCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: TPSCPRGQLGTSSLGARRGCFNV*NWDVLK Trigger: TTTGAGGACGTCCCAATTGCACACATTAAAGCAACC...TCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGACCTGAGGCCAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCGAGCGGGCCAGGGACGCATaGGTGGCAGAGACTACCTGG | + |
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Preference number: 3 (lower is better) Translates to: QDLRPGPSAGSLPVTAFERARDA*VAETTW Trigger: CCAGGTAGTCTCTGCCACCAATGCGTCCCTGGCCCG...CTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR CCA 72 bp | GGGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTaGGCCTTCTGTAGGATCCACAGGAGTCAAGACCTG | + |
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Preference number: 3 (lower is better) Translates to: GLENSRLQRLPQ*AFCRIHRSQDL Trigger: CAGGTCTTGACTCCTGTGGATCCTACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR GCA 72 bp | ATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTaGGAGGAGAGGAGTGTTTCCCCAAGGAGGGCTCGA | + |
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Preference number: 3 (lower is better) Translates to: MSKRPAWHFQPR*EERSVSPRRAR Trigger: TCGAGCCCTCCTTGGGGAAACACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR GCA 72 bp | TCACTCCCTTTCCTGTGGCTTTTGCTGCGGCAGCTATaGCTGCTGTCTGTGCGGCGATGCCGGTGCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: SLPFLWLLLRQL*LLSVRRCRCPS Trigger: AGAAGGGCACCGGCATCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAGGAAAGGGAGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR GCA 72 bp | GATCCACAGGAGTCAAGACCTGAGGCCAGGTCCAAGTaGAGGCTCCCTTCCCGTCACAGCCTTCGAGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: DPQESRPEARSK*RLPSRHSLRAF Trigger: GAAGGCTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR TCA 72 bp | AGTGGGCCTTCTGTAGGATCCACAGGAGTCAAGACCTaGGGCCAGGTCCAAGTGCAGGCTCCCTTCCCGTCA | + |
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Preference number: 3 (lower is better) Translates to: SGPSVGSTGVKT*GQVQVQAPFPS Trigger: TGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAAGGCCCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| 3UTR GCA 72 bp | GACTCTGATGTGGGTCACTCCCTTTCCTGTGGCTTTTaGTGCGGCAGCTATGCCTGCTGTCTGTGCGGCGAT | + |
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Preference number: 3 (lower is better) Translates to: DSDVGHSLSCGF*CGSYACCLCGD Trigger: ATCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAGGAAAGGGAGTGACCCACATCAGAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| CDS-3UTR GCA 90 bp | TGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGCGAAAGCCTTCTGTaGCACAGGAGGCGCGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: WGSHSLMSKRPAWHFQPRCESLL*HRRRGP Trigger: TGGCCCGCGCCTCCTGTGGCACAGAAGGCTTTCGCA...CCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | AGCTGGCCACAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTGTGCGGCGATGCCGGTaGCCTTCTTGGCATTGCGAA | + |
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Preference number: 4 (lower is better) Translates to: SWPQWAWGSHSLMSKRPAVRRCR*PSWHCE Trigger: TTCGCAATGCCAAGAAGGGCACCGGCATCGCCGCAC...AGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTGTGGCCAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | GAGCTGGCCACAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCCTCGGGGCTCCGGTGTaGATATTCTTAGCTGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ELATVGLGFPLPHVQEASLGAPV*IFLAGA Trigger: TGCCCCAGCTAAGAATATCCACACCGGAGCCCCGAG...GCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTGTGGCCAGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS-3UTR GCA 90 bp | AAGGAGGGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTGGGCCTTCTGTACTGTCTGTGCGGCGATaGCGGTGCCCTTCTTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: KEGSRTAGSSGFHSGPSVLSVRR*RCPSWH Trigger: ATGCCAAGAAGGGCACCGGCATCGCCGCACAGACAG...TACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCCCTCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | AAGGAGGGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTGGGCCTTCTGTATATGCCTGCTGTCTGTaGGGCGATGCCGGTGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: KEGSRTAGSSGFHSGPSVYACCL*GDAGAL Trigger: AAGGGCACCGGCATCGCCGCACAGACAGCAGGCATA...TACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCCCTCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | GGCTCGAGAACAGCCGGCTCCAGCGGCTTCCACAGTGGGCCTTCTGTAGGATCCCTCGGGGCTCCGGTGTaGATATTCTTAGCTGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GSRTAGSSGFHSGPSVGSLGAPV*IFLAGA Trigger: TGCCCCAGCTAAGAATATCCACACCGGAGCCCCGAG...GGATCCTACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCGGCTGTTCTCGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| 3UTR CAA 72 bp | CTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTaGGCACTTCCAGCCTCGGTGCGAGGAGAGGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: LGFPLPHVQEAS*ALPASVRGEEC Trigger: ACACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS-3UTR GCA 90 bp | CGGCTCCAGCGGCTTCCACAGTGGGCCTTCTGTAGGATCCACAGGAGTCAAGACTTGCTGCGGCAGCTATaGCTGCTGTCTGTGCGGCGA | + |
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Preference number: 4 (lower is better) Translates to: RLQRLPQWAFCRIHRSQDLLRQL*LLSVRR Trigger: TCGCCGCACAGACAGCAGGCATAGCTGCCGCAGCAA...GTCTTGACTCCTGTGGATCCTACAGAAGGCCCACTGTGGAAGCCGCTGGAGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | TCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGCGAGGAGAGGAGTGGGCAGACCAGCGTCCTaGCCCCATGCCTTTCACTAC | + |
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Preference number: 4 (lower is better) Translates to: SCPRGQLGTSSLGARRGVGRPAS*PHAFHY Trigger: GTAGTGAAAGGCATGGGGCCAGGACGCTGGTCTGCC...CACTCCTCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | GCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTTCCTGTGGCTTTTGCTaGGGCAGCTATGCCTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: AWGSHSLMSKRPAWHFQPSCGFC*GSYACC Trigger: ACAGCAGGCATAGCTGCCGCAGCAAAAGCCACAGGA...AGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | AGCTGGCCACAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTCAATGCCCACAAACCTaGTCATTCCATGTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SWPQWAWGSHSLMSKRPAQCPQT*SFHVQP Trigger: GGGCTGGACATGGAATGACCAGGTTTGTGGGCATTG...AGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTGTGGCCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS-3UTR CCA 90 bp | CTGAGGCCAGGTCCAAGTGCAGGCTCCCTTCCCGTCACAGCCTTCGAGCCTTCCCAATGCCCACAAACCTaGTCATTCCATGTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LRPGPSAGSLPVTAFEPSQCPQT*SFHVQP Trigger: GGGCTGGACATGGAATGACCAGGTTTGTGGGCATTG...GGAAGGCTCGAAGGCTGTGACGGGAAGGGAGCCTGCACTTGGACCTGGCCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133553.8 |
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| CDS-3UTR CCA 90 bp | GGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTTGCCGGTGCCCTTCTTaGCATTGCGAAAGCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GVPTPSCPRGQLGTSSLGCRCPS*HCESLL Trigger: CAGAAGGCTTTCGCAATGCCAAGAAGGGCACCGGCA...ACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | GAGCTGGCCACAGTGGGCCTGGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCACTACGACTCTGATGTaGGTCACTCCCTTTCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: ELATVGLGFPLPHVQEASTTTLM*VTPFPV Trigger: CACAGGAAAGGGAGTGACCCACATCAGAGTCGTAGT...GCTGGCCTCTTGGACATGAGGGAGTGGGAACCCCAGGCCCACTGTGGCCAGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | GGGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTCTCAAACTTCATCCCTaGCCACTGCAGAGAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: GVPTPSCPRGQLGTSSLGLKLHP*PLQRAL Trigger: GAGAGCTCTCTGCAGTGGGCAGGGATGAAGTTTGAG...ACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CCA 90 bp | AGGATCCACAGGAGTCAAGACCTGAGGCCAGGTCCAAGTGCAGGCTCCCTTCCCAGAGCTCTCCTGTCCTaGAACCGGAGGGTAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: RIHRSQDLRPGPSAGSLPRALLS*NRRVKA Trigger: AGCCTTTACCCTCCGGTTCCAGGACAGGAGAGCTCT...GGGAAGGGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | GGGTTCCCACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGTCCCTTTCAGTGTTCTaGCTGGCAGCTGAGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: GFPLPHVQEASLALPASVSLSVF*LAAESS Trigger: AGAAGACTCAGCTGCCAGGCAGAACACTGAAAGGGA...CACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGTGGGAACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS-3UTR CCA 90 bp | ACTCCCTCATGTCCAAGAGGCCAGCTTGGCACTTCCAGCCTCGGTGCGAGGAGATCACTCCCTTTCCTGTaGCTTTTGCTGCGGCAGCTA | + |
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Preference number: 4 (lower is better) Translates to: TPSCPRGQLGTSSLGARRSLPFL*LLLRQL Trigger: TAGCTGCCGCAGCAAAAGCCACAGGAAAGGGAGTGA...TCTCCTCGCACCGAGGCTGGAAGTGCCAAGCTGGCCTCTTGGACATGAGGGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR GCA 90 bp | TTCTGTAGGATCCACAGGAGTCAAGACCTGAGGCCAGGTCCAAGTGCAGGCTCCTCCCTTTCAGTGTTCTaGCTGGCAGCTGAGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: FCRIHRSQDLRPGPSAGSSLSVF*LAAESS Trigger: AGAAGACTCAGCTGCCAGGCAGAACACTGAAAGGGA...GGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTAGGATCCACAGGAGTCAAGACCTGAGGCCAGGTCCAAGTGCAGGCTCCGGTTGCTTTAATGTGTaGAATTGGGACGTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: FCRIHRSQDLRPGPSAGSGCFNV*NWDVLK Trigger: TTTGAGGACGTCCCAATTGCACACATTAAAGCAACC...GGAGCCTGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS-3UTR CAA 90 bp | TGGGCCTTCTGTAGGATCCACAGGAGTCAAGACCTGAGGCCAGGTCCAAGTGCACGGGCCAGGGACGCATaGGTGGCAGAGACTACCTGG | + |
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Preference number: 5 (lower is better) Translates to: WAFCRIHRSQDLRPGPSARARDA*VAETTW Trigger: CCAGGTAGTCTCTGCCACCAATGCGTCCCTGGCCCG...TGCACTTGGACCTGGCCTCAGGTCTTGACTCCTGTGGATCCTACAGAAGGCCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS CCA 90 bp | GTCCTCAAACTTCATCCCTGCCCACTGCAGAGAGCTCTCCTGTCCTaGAACCGGAGGGTAAAGGCTGAAGCGACTTGGAGCCGCTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: VLKLHPCPLQRALLS*NRRVKAEATWSRFP Trigger: AGGGAAGCGGCTCCAAGTCGCTTCAGCCTTTACCCTCCGGTTCCAGGACAGGAGAGCTCTCTGCAGTGGGCAGGGATGAAGTTTGAGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032840.5 |
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| CDS GCA 72 bp | CTGAAGCGACTTGGAGCCGCTTCCCTTTCAGTGTTCTaGCTGGCAGCTGAGTCTTCTAATCTCGGGGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: LKRLGAASLSVF*LAAESSNLGAP Trigger: CGGAGCCCCGAGATTAGAAGACTCAGCTGCCAGGCAGAACACTGAAAGGGAAGCGGCTCCAAGTCGCTTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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| CDS CCA 72 bp | CTGGCAGCTGAGTCTTCTAATCTCGGGGCTCCGGTGTaGATATTCTTAGCTGGGGCAATGCCCACAAACCTG | + |
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Preference number: 6 (lower is better) Translates to: LAAESSNLGAPV*IFLAGAMPTNL Trigger: CAGGTTTGTGGGCATTGCCCCAGCTAAGAATATCCACACCGGAGCCCCGAGATTAGAAGACTCAGCTGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032840.5 ENSMUST00000133553.8 |
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