Pregenerated sensors for MRPL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028140Ensembl transcript IDs: ENSMUST00000029786.14, ENSMUST00000196143.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCCCGTATGTGCAGCTCAGTCTGCTGAGTCCACATGTTCTCAATaGTCCACATCTGCTCAGAGCTGGGGTAGCTCCAAGTGCTGGCCA | + |
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Preference number: 1 (lower is better) Translates to: CPVCAAQSAESTCSQ*STSAQSWGSSKCWP Trigger: TGGCCAGCACTTGGAGCTACCCCAGCTCTGAGCAGATGTGGATCATTGAGAACATGTGGACTCAGCAGACTGAGCTGCACATACGGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 90 bp | CTCCATGGCTCAAGACACCTTACTTGGATATCCTGCCCCGTCAACTaGAGCCCAGTTAAGCAGCTCTTCATTTCTGCACAAGACACAGTC | + |
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Preference number: 1 (lower is better) Translates to: LHGSRHLTWISCPVN*SPVKQLFISAQDTV Trigger: GACTGTGTCTTGTGCAGAAATGAAGAGCTGCTTAACTGGGCTTCAGTTGACGGGGCAGGATATCCAAGTAAGGTGTCTTGAGCCATGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR GCA 90 bp | AGGGCACCAGATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCAGTACCTTTGGAAGAGCAGTCAGAGCTC | + |
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Preference number: 1 (lower is better) Translates to: RAPDLVKDGCEPPCG*WELNSVPLEEQSEL Trigger: GAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAGATCTGGTGCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 90 bp | ATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGACTCAGTACCTTTGGAAGAGCAGTCAGAGCTCTTACCTGCTG | + |
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Preference number: 1 (lower is better) Translates to: ILLRMVVSHHVVAGN*TQYLWKSSQSSYLL Trigger: CAGCAGGTAAGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CCA 90 bp | GCACCAGATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGTACCTTTGGAAGAGCAGTCAGAGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: APDLVKDGCEPPCGC*ELNSVPLEEQSELL Trigger: TAAGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAGATCTGGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR CCA 90 bp | CTGAAGGAGATGACAACCACAGCGAACCTGCCCCGTATGTGCAGCTCAGTCTGCGGTAGCTCCAAGTGCTaGCCAGGCTGCTCCACGGCT | + |
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Preference number: 2 (lower is better) Translates to: LKEMTTTANLPRMCSSVCGSSKC*PGCSTA Trigger: AGCCGTGGAGCAGCCTGGCCAGCACTTGGAGCTACC...GCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGTGGTTGTCATCTCCTTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR TCA 90 bp | CTGAAGGAGATGACAACCACAGCGAACCTGCCCCGTATGTGCAGCTCAGTCTGCTCCACATGTTCTCAATaGTCCACATCTGCTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: LKEMTTTANLPRMCSSVCSTCSQ*STSAQS Trigger: GCTCTGAGCAGATGTGGATCATTGAGAACATGTGGA...GCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGTGGTTGTCATCTCCTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR GCA 90 bp | TGTAGGACACAGAGAATGGCTATATTTTCCTCCTTTGTACAGCCCTCCATGGCTTGGGGTAGCTCCAAGTaGTGGCCAGGCTGCTCCACG | + |
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Preference number: 2 (lower is better) Translates to: CRTQRMAIFSSFVQPSMAWGSSK*WPGCST Trigger: CGTGGAGCAGCCTGGCCAGCACTTGGAGCTACCCCA...AGCCATGGAGGGCTGTACAAAGGAGGAAAATATAGCCATTCTCTGTGTCCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CAA 90 bp | GGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGTACCTTaGGAAGAGCAGTCAGAGCTCTTACCTGCTGAGCCATCTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: GCEPPCGCWELNSVP*EEQSELLPAEPSCQ Trigger: CTGGCAAGATGGCTCAGCAGGTAAGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGAAGAGGGCACCAGATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTCCTGCTGAGCCATCTTaGCAGCCCAGTTCTTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: LQKRAPDLVKDGCEPPCGPAEPS*QPSSFS Trigger: AGAAAAAGAACTGGGCTGGCAAGATGGCTCAGCAGG...ACCACATGGTGGCTCACAACCATCCTTAACAAGATCTGGTGCCCTCTTCTGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CAA 90 bp | CTCATGGCAGCTGTAGGACACAGAGAATGGCTATATTTTCCTCCTTaGTACAGCCCTCCATGGCTCAAGACACCTTACTTGGATATCCTG | + |
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Preference number: 2 (lower is better) Translates to: LMAAVGHREWLYFPP*YSPPWLKTPYLDIL Trigger: CAGGATATCCAAGTAAGGTGTCTTGAGCCATGGAGGGCTGTACAAAGGAGGAAAATATAGCCATTCTCTGTGTCCTACAGCTGCCATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CAA 90 bp | GATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGTACCTTTGGAAGAGCAGTCAGAGCTCTTACCTGCT | + |
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Preference number: 2 (lower is better) Translates to: DLVKDGCEPPCGCWE*NSVPLEEQSELLPA Trigger: AGCAGGTAAGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR GCA 90 bp | CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCACCAGATCTTGTTAAGGATGAGCCACCATGTGGTTaGTGGGAATTGAACTCAGTA | + |
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Preference number: 2 (lower is better) Translates to: HCSCLQTLQKRAPDLVKDEPPCG*WELNSV Trigger: TACTGAGTTCAATTCCCAGCAACCACATGGTGGCTC...ATCCTTAACAAGATCTGGTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR CCA 90 bp | GAAGAGCAGTCAGAGCTCTTACCTGCTGAGCCATCTTGCCAGCCCAGTTCTTTTGTAGGACACAGAGAATaGCTATATTTTCCTCCTTTG | + |
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Preference number: 2 (lower is better) Translates to: EEQSELLPAEPSCQPSSFVGHRE*LYFPPL Trigger: CAAAGGAGGAAAATATAGCCATTCTCTGTGTCCTAC...AAAAGAACTGGGCTGGCAAGATGGCTCAGCAGGTAAGAGCTCTGACTGCTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR GCA 90 bp | TTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCACATTACATCTACTGCCTaGAGAGCGAGGCAACACAGC | + |
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Preference number: 2 (lower is better) Translates to: FIICKYTVAVFRHSRRGHITSTA*RARQHS Trigger: GCTGTGTTGCCTCGCTCTGCAGGCAGTAGATGTAAT...GTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR CCA 90 bp | GTGGAATCCACTCTATCAACCACATGGAGAGAGAAAGCTCTAAGAGCAGATGTACTAAGAAGACTGTTTTaGCCACTGATATTCAGCTTA | + |
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Preference number: 2 (lower is better) Translates to: VESTLSTTWREKALRADVLRRLF*PLIFSL Trigger: TAAGCTGAATATCAGTGGCCAAAACAGTCTTCTTAG...TACATCTGCTCTTAGAGCTTTCTCTCTCCATGTGGTTGATAGAGTGGATTCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR-3UTR GCA 90 bp | AAACCCATGTACCATCATACCCAACTGTCCTTTTCTGTGTGTAGGTTTTGTGTAATGCTATGTCTAGGATaGATTGTTTCTAGCTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: KPMYHHTQLSFSVCRFCVMLCLG*IVSSSL Trigger: AAGAGAGCTAGAAACAATGCATCCTAGACATAGCAT...TACACAAAACCTACACACAGAAAAGGACAGTTGGGTATGATGGTACATGGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR GCA 72 bp | GGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTaGCTCTCAAGTGCTGGGGTTAAACCCATGTACCAT | + |
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Preference number: 3 (lower is better) Translates to: GRPQTWKEITCL*LSSAGVKPMYH Trigger: ATGGTACATGGGTTTAACCCCAGCACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR TCA 72 bp | TGTGCAGCTCAGTCTGCTGAGTCCACATGTTCTCAATaGTCCACATCTGCTCAGAGCTGGGGTAGCTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: CAAQSAESTCSQ*STSAQSWGSSK Trigger: CTTGGAGCTACCCCAGCTCTGAGCAGATGTGGATCATTGAGAACATGTGGACTCAGCAGACTGAGCTGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 72 bp | ACAGCGAACCTGCCCCGTATGTGCAGCTCAGTCTGCTaGGTCCACATGTTCTCAATGATCCACATCTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: TANLPRMCSSVC*VHMFSMIHICS Trigger: TGAGCAGATGTGGATCATTGAGAACATGTGGACTCAGCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 72 bp | AGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGACTCAGTACCTTTGGAAGAGCAGTCAGAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RMVVSHHVVAGN*TQYLWKSSQSS Trigger: AGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 72 bp | GTGTCACTCTTCTGTAAGAGCAGTATTCTTAACTGCTaGGCCATCCATCTCTCCAGCCCCGTGTGTTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: VSLFCKSSILNC*AIHLSSPVCFL Trigger: GAGAAAACACACGGGGCTGGAGAGATGGATGGCTCAGCAGTTAAGAATACTGCTCTTACAGAAGAGTGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR TCA 72 bp | TCAAGACACCTTACTTGGATATCCTGCCCCGTCAACTaGAGCCCAGTTAAGCAGCTCTTCATTTCTGCACAA | + |
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Preference number: 3 (lower is better) Translates to: SRHLTWISCPVN*SPVKQLFISAQ Trigger: TTGTGCAGAAATGAAGAGCTGCTTAACTGGGCTTCAGTTGACGGGGCAGGATATCCAAGTAAGGTGTCTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR GCA 72 bp | GATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCAGTACCTTTGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLVKDGCEPPCG*WELNSVPLEEQ Trigger: CTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAGATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CCA 72 bp | CTTGTTAAGGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGTACCTTTGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LVKDGCEPPCGC*ELNSVPLEEQS Trigger: TGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR TCA 72 bp | AGTACCTTTGGAAGAGCAGTCAGAGCTCTTACCTGCTaGGCCATCTTGCCAGCCCAGTTCTTTTTCTTTTTA | + |
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Preference number: 3 (lower is better) Translates to: STFGRAVRALTC*AILPAQFFFFL Trigger: TAAAAAGAAAAAGAACTGGGCTGGCAAGATGGCTCAGCAGGTAAGAGCTCTGACTGCTCTTCCAAAGGTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CCA 72 bp | ACTCTCCCAAAGATGGAACGGCTAAGAAGACTGTTTTaGCCACTGATATTCAGCTTATTACATCTACTGCCT | + |
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Preference number: 3 (lower is better) Translates to: TLPKMERLRRLF*PLIFSLLHLLP Trigger: AGGCAGTAGATGTAATAAGCTGAATATCAGTGGCCAAAACAGTCTTCTTAGCCGTTCCATCTTTGGGAGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CCA 90 bp | GACCAGGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTGAGTGATAGGCTCCTCTaGCAGCCTCAGAGCATGTGG | + |
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Preference number: 4 (lower is better) Translates to: DQAGPKLGKRSPVSASQVSDRLL*QPQSMW Trigger: CCACATGCTCTGAGGCTGCCAGAGGAGCCTATCACT...CACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCCTGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | CGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTGCTGGGGTTACCAGCGCTCCACGATaGCCGTGCTCTGATAATGAG | + |
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Preference number: 4 (lower is better) Translates to: RPQTWKEITCLCLSSAGVTSAPR*PCSDNE Trigger: CTCATTATCAGAGCACGGTCATCGTGGAGCGCTGGT...AACCCCAGCACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | TGTAGCTGTCTTCAGACACTCCAGAAGAGGGCACCAGATCTTGTTAAGGATGGTTCCCGGATGCCTCCTTaGCGCAGCCAAGCAGCACCT | + |
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Preference number: 4 (lower is better) Translates to: CSCLQTLQKRAPDLVKDGSRMPP*RSQAAP Trigger: AGGTGCTGCTTGGCTGCGTCAAGGAGGCATCCGGGA...ACCATCCTTAACAAGATCTGGTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | CTCCAGAAGAGGGCACCAGATCTTGTTAAGGATGGTTGTGAGCCACCATGTGGTACCAGCGCTCCACGATaGCCGTGCTCTGATAATGAG | + |
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Preference number: 4 (lower is better) Translates to: LQKRAPDLVKDGCEPPCGTSAPR*PCSDNE Trigger: CTCATTATCAGAGCACGGTCATCGTGGAGCGCTGGT...ACCACATGGTGGCTCACAACCATCCTTAACAAGATCTGGTGCCCTCTTCTGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | GACCAGGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTGGCTACTTGTGGCTGTTaGAAACCACACAGGATCAAG | + |
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Preference number: 4 (lower is better) Translates to: DQAGPKLGKRSPVSASQVATCGC*KPHRIK Trigger: CTTGATCCTGTGTGGTTTTCAACAGCCACAAGTAGC...CACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCCTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR GCA 90 bp | CGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTGCTGGGGTTATTTCGTCCACAGACTaGGTGAGGATGAGCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: RPQTWKEITCLCLSSAGVISSTD*VRMSSK Trigger: CTTGGAGCTCATCCTCACGCAGTCTGTGGACGAAAT...AACCCCAGCACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | GTGGAATCCACTCTATCAACCACATGGAGAGAGAAAGCTCTAAGAGCAGATGTAAACTTATACACGCGGTaGCGCCGGTGCAGGTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: VESTLSTTWREKALRADVNLYTR*RRCRCG Trigger: GCCGCACCTGCACCGGCGTCACCGCGTGTATAAGTT...TACATCTGCTCTTAGAGCTTTCTCTCTCCATGTGGTTGATAGAGTGGATTCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | CCTTTATTCCCAGCACTCGGGAGGCAGAGGAAGGCAGATCTCTTGAGTTCCAGGCCACACCAAGATTCTTaGAGAAATGGCGGGCAACTA | + |
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Preference number: 4 (lower is better) Translates to: PLFPALGRQRKADLLSSRPHQDS*RNGGQL Trigger: TAGTTGCCCGCCATTTCTTCAAGAATCTTGGTGTGG...CCTGGAACTCAAGAGATCTGCCTTCCTCTGCCTCCCGAGTGCTGGGAATAAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | AGACCAGGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTATTCCCACCTCTAGATaGCAGCTTCTCAGAAACTTC | + |
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Preference number: 4 (lower is better) Translates to: RPGRPQTWKEITCLCLSSIPTSR*QLLRNF Trigger: GAAGTTTCTGAGAAGCTGTCATCTAGAGGTGGGAAT...ACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCCTGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR GCA 90 bp | GAAGAGCAGTCAGAGCTCTTACCTGCTGAGCCATCTTGCCAGCCCAGTTCTTTTATTTCGTCCACAGACTaGGTGAGGATGAGCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: EEQSELLPAEPSCQPSSFISSTD*VRMSSK Trigger: CTTGGAGCTCATCCTCACGCAGTCTGTGGACGAAAT...AAAAGAACTGGGCTGGCAAGATGGCTCAGCAGGTAAGAGCTCTGACTGCTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CCA 90 bp | AGACCAGGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTTGTCTGCCTCCATGTTaGCTTCCATCTTCAATCTTG | + |
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Preference number: 4 (lower is better) Translates to: RPGRPQTWKEITCLCLSSCLPPC*LPSSIL Trigger: CAAGATTGAAGATGGAAGCCAACATGGAGGCAGACA...ACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCCTGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR CAA 72 bp | CCACCATGTGGTTGCTGGGAATTGAACTCAGTACCTTaGGAAGAGCAGTCAGAGCTCTTACCTGCTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PPCGCWELNSVP*EEQSELLPAEP Trigger: TGGCTCAGCAGGTAAGAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CCA 90 bp | TGTAGGACACAGAGAATGGCTATATTTTCCTCCTTTGTACAGCCCTCCATGGCTAGTGATAGGCTCCTCTaGCAGCCTCAGAGCATGTGG | + |
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Preference number: 4 (lower is better) Translates to: CRTQRMAIFSSFVQPSMASDRLL*QPQSMW Trigger: CCACATGCTCTGAGGCTGCCAGAGGAGCCTATCACT...AGCCATGGAGGGCTGTACAAAGGAGGAAAATATAGCCATTCTCTGTGTCCTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CCA 90 bp | AGACCAGGCCGGCCCCAAACTTGGAAAGAGATCACCTGTCTCTGCCTCTCAAGTAGTCTTAGCTACTTGTaGCTGTTGAAAACCACACAG | + |
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Preference number: 4 (lower is better) Translates to: RPGRPQTWKEITCLCLSSSLSYL*LLKTTQ Trigger: CTGTGTGGTTTTCAACAGCCACAAGTAGCTAAGACT...ACTTGAGAGGCAGAGACAGGTGATCTCTTTCCAAGTTTGGGGCCGGCCTGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR CAA 72 bp | AAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGTACCTTTGGAAGAGCAGTCAGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KDGCEPPCGCWE*NSVPLEEQSEL Trigger: GAGCTCTGACTGCTCTTCCAAAGGTACTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | CTATGTATCATGTGTGTTCAGTACCTGAAAAGACAGAAAAGGTGTCACTCTTCTTCCCGGATGCCTCCTTaGCGCAGCCAAGCAGCACCT | + |
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Preference number: 4 (lower is better) Translates to: LCIMCVQYLKRQKRCHSSSRMPP*RSQAAP Trigger: AGGTGCTGCTTGGCTGCGTCAAGGAGGCATCCGGGA...AGAAGAGTGACACCTTTTCTGTCTTTTCAGGTACTGAACACACATGATACATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | TTTATTCCCAGCACTCGGGAGGCAGAGGAAGGCAGATCTCTTGAGTTCCAGGCCGGTTTAGTTCCCATTTaGCATTGTTCTTCATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: FIPSTREAEEGRSLEFQAGLVPI*HCSSFP Trigger: TGGGAATGAAGAACAATGTCAAATGGGAACTAAACC...GGCCTGGAACTCAAGAGATCTGCCTTCCTCTGCCTCCCGAGTGCTGGGAATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR TCA 90 bp | AAGAGCAGATGTAATTGGCTATGTTCAGAGCAGTCTGCTCATGGCAGCTGTAGGCCACACCAAGATTCTTaGAGAAATGGCGGGCAACTA | + |
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Preference number: 4 (lower is better) Translates to: KSRCNWLCSEQSAHGSCRPHQDS*RNGGQL Trigger: TAGTTGCCCGCCATTTCTTCAAGAATCTTGGTGTGG...CCTACAGCTGCCATGAGCAGACTGCTCTGAACATAGCCAATTACATCTGCTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCACCAGATCTTGTTAAGGATATTCCCACCTCTAGATaGCAGCTTCTCAGAAACTTC | + |
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Preference number: 4 (lower is better) Translates to: HCSCLQTLQKRAPDLVKDIPTSR*QLLRNF Trigger: GAAGTTTCTGAGAAGCTGTCATCTAGAGGTGGGAAT...ATCCTTAACAAGATCTGGTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR GCA 90 bp | TGCACAAGACACAGTCTGGCTGAGAATAAAACAACTGTCAGAATAGTGGCTAGGAGGAGAAGCATACACTaGCAGTCCCTGAGAAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: CTRHSLAENKTTVRIVARRRSIH*QSLRKE Trigger: CTCCTTTCTCAGGGACTGGCAGTGTATGCTTCTCCT...CCTAGCCACTATTCTGACAGTTGTTTTATTCTCAGCCAGACTGTGTCTTGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| 3UTR CAA 72 bp | GCTGTAGGACACAGAGAATGGCTATATTTTCCTCCTTaGTACAGCCCTCCATGGCTCAAGACACCTTACTTG | + |
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Preference number: 4 (lower is better) Translates to: AVGHREWLYFPP*YSPPWLKTPYL Trigger: CAAGTAAGGTGTCTTGAGCCATGGAGGGCTGTACAAAGGAGGAAAATATAGCCATTCTCTGTGTCCTACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR GCA 90 bp | AAACCCATGTACCATCATACCCAACTGTCCTTTTCTGTGTGTAGGTTTTGTGTAAGGAGAAGCATACACTaGCAGTCCCTGAGAAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KPMYHHTQLSFSVCRFCVRRSIH*QSLRKE Trigger: CTCCTTTCTCAGGGACTGGCAGTGTATGCTTCTCCT...TACACAAAACCTACACACAGAAAAGGACAGTTGGGTATGATGGTACATGGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| 3UTR CAA 72 bp | AACTCTCCCAAAGATGGAACGGCTAAGAAGACTGTTTaGGCCACTGATATTCAGCTTATTACATCTACTGCC | + |
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Preference number: 4 (lower is better) Translates to: NSPKDGTAKKTV*ATDIQLITSTA Trigger: GGCAGTAGATGTAATAAGCTGAATATCAGTGGCCAAAACAGTCTTCTTAGCCGTTCCATCTTTGGGAGAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR TCA 90 bp | CTCCCAAAGATGGAACGGCTAAGAAGACTGTTTTGGCCACTGATATTCAGCTTAGGTTTAGTTCCCATTTaGCATTGTTCTTCATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LPKMERLRRLFWPLIFSLGLVPI*HCSSFP Trigger: TGGGAATGAAGAACAATGTCAAATGGGAACTAAACC...TAAGCTGAATATCAGTGGCCAAAACAGTCTTCTTAGCCGTTCCATCTTTGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CCA 90 bp | GTGGAATCCACTCTATCAACCACATGGAGAGAGAAAGCTCTAAGAGCAGATGTATGTATCTTTTCGTCTTaGGCTTCTGAAAGAGCACTA | + |
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Preference number: 4 (lower is better) Translates to: VESTLSTTWREKALRADVCIFSS*ASERAL Trigger: TAGTGCTCTTTCAGAAGCCCAAGACGAAAAGATACA...TACATCTGCTCTTAGAGCTTTCTCTCTCCATGTGGTTGATAGAGTGGATTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CAA 90 bp | CTGAGTCCACATGTTCTCAATGATCCACATCTGCTCAGAGCTGGGGTAGCTCCACAGACAGCCTGGGGGTaGGTGGGGGCCACGCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LSPHVLNDPHLLRAGVAPQTAWG*VGATLL Trigger: CAAGAGCGTGGCCCCCACCAACCCCCAGGCTGTCTG...TGGAGCTACCCCAGCTCTGAGCAGATGTGGATCATTGAGAACATGTGGACTCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CAA 90 bp | CTGAAGGAGATGACAACCACAGCGAACCTGCCCCGTATGTGCAGCTCAGTCTGCAGGATGAGCTCCAAGTaGTCTTTGGGCCGGTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LKEMTTTANLPRMCSSVCRMSSK*SLGRCF Trigger: GAAACACCGGCCCAAAGACAACTTGGAGCTCATCCT...GCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGTGGTTGTCATCTCCTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CAA 90 bp | CTGAAGGAGATGACAACCACAGCGAACCTGCCCCGTATGTGCAGCTCAGTCTGCACCACACCAAGATTCTaGAAGAAATGGCGGGCAACT | + |
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Preference number: 5 (lower is better) Translates to: LKEMTTTANLPRMCSSVCTTPRF*KKWRAT Trigger: AGTTGCCCGCCATTTCTTCAAGAATCTTGGTGTGGT...GCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGTGGTTGTCATCTCCTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CAA 90 bp | CCTTTATTCCCAGCACTCGGGAGGCAGAGGAAGGCAGATCTCTTGAGTTCCAGGAGTTCCCATTTGACATaGTTCTTCATTCCCACCTCT | + |
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Preference number: 5 (lower is better) Translates to: PLFPALGRQRKADLLSSRSSHLT*FFIPTS Trigger: AGAGGTGGGAATGAAGAACAATGTCAAATGGGAACT...CCTGGAACTCAAGAGATCTGCCTTCCTCTGCCTCCCGAGTGCTGGGAATAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR CAA 90 bp | TGTAGCTGTCTTCAGACACTCCAGAAGAGGGCACCAGATCTTGTTAAGGATGGTAGTTCCCATTTGACATaGTTCTTCATTCCCACCTCT | + |
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Preference number: 5 (lower is better) Translates to: CSCLQTLQKRAPDLVKDGSSHLT*FFIPTS Trigger: AGAGGTGGGAATGAAGAACAATGTCAAATGGGAACT...ACCATCCTTAACAAGATCTGGTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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| CDS-3UTR CAA 90 bp | CTATGTATCATGTGTGTTCAGTACCTGAAAAGACAGAAAAGGTGTCACTCTTCTAGGATGAGCTCCAAGTaGTCTTTGGGCCGGTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LCIMCVQYLKRQKRCHSSRMSSK*SLGRCF Trigger: GAAACACCGGCCCAAAGACAACTTGGAGCTCATCCT...AGAAGAGTGACACCTTTTCTGTCTTTTCAGGTACTGAACACACATGATACATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR CAA 90 bp | TTTTCTCACTGTGTAGCTCTGACTAGCTTACAACTGTCTATAAAGACCAGGCCGAGCTACTTGTGGCTGTaGAAAACCACACAGGATCAA | + |
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Preference number: 5 (lower is better) Translates to: FSHCVALTSLQLSIKTRPSYLWL*KTTQDQ Trigger: TTGATCCTGTGTGGTTTTCAACAGCCACAAGTAGCT...CGGCCTGGTCTTTATAGACAGTTGTAAGCTAGTCAGAGCTACACAGTGAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS GCA 90 bp | TTGTGGCTGTTGAAAACCACACAGGATCAAGATCTTCTTCCTGTCTaGCTCCATGTTGGCTTCCATCTTCAATCTTGTAATTGTTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LWLLKTTQDQDLLPV*LHVGFHLQSCNCSV Trigger: AACAGAACAATTACAAGATTGAAGATGGAAGCCAACATGGAGGCAGACAGGAAGAAGATCTTGATCCTGTGTGGTTTTCAACAGCCACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR CAA 90 bp | AAACCCATGTACCATCATACCCAACTGTCCTTTTCTGTGTGTAGGTTTTGTGTATCTGTTTCTTATTCCTaGGTGTCCCCTAGTAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: KPMYHHTQLSFSVCRFCVSVSYS*VSPSSH Trigger: GTGACTACTAGGGGACACCAAGGAATAAGAAACAGA...TACACAAAACCTACACACAGAAAAGGACAGTTGGGTATGATGGTACATGGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS-3UTR CAA 90 bp | GAACCTGTGTCTTCTGCAGGAGCAACAAGTACATTAACCGCTTTTAAATGTTATCTGTCTGCCTCCATGTaGGCTTCCATCTTCAATCTT | + |
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Preference number: 5 (lower is better) Translates to: EPVSSAGATSTLTAFKCYLSASM*ASIFNL Trigger: AAGATTGAAGATGGAAGCCAACATGGAGGCAGACAG...ATAACATTTAAAAGCGGTTAATGTACTTGTTGCTCCTGCAGAAGACACAGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196143.2 |
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| CDS GCA 72 bp | ACCAGATCACCCCGGACTCCAATTTCGTCCACAGACTaGGTGAGGATGAGCTCCAAGTTGTCTTTGGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: TRSPRTPISSTD*VRMSSKLSLGR Trigger: CCGGCCCAAAGACAACTTGGAGCTCATCCTCACGCAGTCTGTGGACGAAATTGGAGTCCGGGGTGATCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029786.14 ENSMUST00000196143.2 |
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| CDS CCA 72 bp | CTCAGAAACTTCACTGTCGCCTCTCCTGCCTTTGTCTaGATCTTCTCCAGTTTTCCTTCGCGTCTCAGCGAT | + |
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Preference number: 6 (lower is better) Translates to: LRNFTVASPAFV*IFSSFPSRLSD Trigger: ATCGCTGAGACGCGAAGGAAAACTGGAGAAGATCCAGACAAAGGCAGGAGAGGCGACAGTGAAGTTTCTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029786.14 ENSMUST00000196143.2 |
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| CDS TCA 72 bp | GCTAACCAGTGCTTGTATCTTTTCGTCTTGGGCTTCTaGAAGAGCACTACGGACATAGGAACTCTCACAGTG | + |
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Preference number: 6 (lower is better) Translates to: ANQCLYLFVLGF*KSTTDIGTLTV Trigger: CACTGTGAGAGTTCCTATGTCCGTAGTGCTCTTTCAGAAGCCCAAGACGAAAAGATACAAGCACTGGTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029786.14 |
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