Pregenerated sensors for MRPL55 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036860Ensembl transcript IDs: ENSMUST00000045697.12, ENSMUST00000108784.4, ENSMUST00000108785.2, ENSMUST00000108786.8, ENSMUST00000108787.9
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGGGCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTACTTACAAAATGTCCCTaGTGGAACTCCCTGACAGAC | + |
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Preference number: 2 (lower is better) Translates to: WASTQKKTMTGGYGFKNVLTKCP*WNSLTD Trigger: GTCTGTCAGGGAGTTCCACCAGGGACATTTTGTAAG...TACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGTACTTACAAAATGTCCCTaGTGGAACTCCCTGACAGAC | + |
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Preference number: 2 (lower is better) Translates to: FHAKEDNDRWLWFQERMVLTKCP*WNSLTD Trigger: GTCTGTCAGGGAGTTCCACCAGGGACATTTTGTAAG...TACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| 3UTR-3UTR CCA 90 bp | ACATACTTCTCAGAAATGATGAGTTCCAGGACTGGGCTTCCACGCAAAAGAAGAAATGACAGGTGGTTATaGTTTCAAGAACGTATGGTA | + |
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Preference number: 2 (lower is better) Translates to: TYFSEMMSSRTGLPRKRRNDRWL*FQERMV Trigger: TACCATACGTTCTTGAAACCATAACCACCTGTCATT...TCTTCTTTTGCGTGGAAGCCCAGTCCTGGAACTCATCATTTCTGAGAAGTATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| 3UTR CCA 72 bp | TGGCACATACTTCTCAGAAATGATGAGTTCCAGGACTaGGCTTCCACGCAAAAGAAGACAATGACAGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: WHILLRNDEFQD*ASTQKKTMTGG Trigger: ACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCCCAGTCCTGGAACTCATCATTTCTGAGAAGTATGTGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| 3UTR TCA 72 bp | AGTTCCAGGACTGGGCTTCCACGCAAAAGAAGACAATaGCAGGTGGTTATGGTTTCAAGAACGTATGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: SSRTGLPRKRRQ*QVVMVSRTYGK Trigger: TTTACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCCCAGTCCTGGAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| CDS-3UTR TCA 90 bp | CTGGCTTTGACTTGGCACATACTTCTCAGAAATGATGAGTTCCAGGACTGGGCTGCGCAGTCGAGTGAGTaGAGCCCTGCTGCAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LALTWHILLRNDEFQDWAAQSSE*SPAAVS Trigger: GCTGACTGCAGCAGGGCTTCACTCACTCGACTGCGC...AGCCCAGTCCTGGAACTCATCATTTCTGAGAAGTATGTGCCAAGTCAAAGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| CDS-3UTR GCA 90 bp | CTGGCTTTGACTTGGCACATACTTCTCAGAAATGATGAGTTCCAGGACTGGGCTTTCGGAACCGGGCCCTaGGCTCTTCTGGAGACAGGG | + |
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Preference number: 4 (lower is better) Translates to: LALTWHILLRNDEFQDWAFGTGP*ALLETG Trigger: CCCTGTCTCCAGAAGAGCGCAGGGCCCGGTTCCGAA...AGCCCAGTCCTGGAACTCATCATTTCTGAGAAGTATGTGCCAAGTCAAAGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| CDS-3UTR CCA 90 bp | GAGTTCCAGGACTGGGCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTCGCCAGCATGCGTCGTaGCTCCCGGTATCGGATATG | + |
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Preference number: 4 (lower is better) Translates to: EFQDWASTQKKTMTGGYGRQHAS*LPVSDM Trigger: CATATCCGATACCGGGAGCCACGACGCATGCTGGCG...ACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCCCAGTCCTGGAACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| CDS-3UTR TCA 90 bp | GCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGGCGCAGTCGAGTGAGTaGAGCCCTGCTGCAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ASTQKKTMTGGYGFKNVWAQSSE*SPAAVS Trigger: GCTGACTGCAGCAGGGCTTCACTCACTCGACTGCGC...CCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR TCA 90 bp | CTGGCTTTGACTTGGCACATACTTCTCAGAAATGATGAGTTCCAGGACTGGGCTCTCTTCTGCTGGAGCTaGGCCTCCCGTTTTCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LALTWHILLRNDEFQDWALFCWS*ASRFRN Trigger: GTTCCGAAAACGGGAGGCTCAGCTCCAGCAGAAGAG...AGCCCAGTCCTGGAACTCATCATTTCTGAGAAGTATGTGCCAAGTCAAAGCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 |
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| CDS-3UTR GCA 90 bp | GGCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGTTCGGAACCGGGCCCTaGGCTCTTCTGGAGACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GFHAKEDNDRWLWFQERMFGTGP*ALLETG Trigger: CCCTGTCTCCAGAAGAGCGCAGGGCCCGGTTCCGAA...CATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR CCA 90 bp | TGGGCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTACGCCAGCATGCGTCGTaGCTCCCGGTATCGGATATG | + |
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Preference number: 4 (lower is better) Translates to: WASTQKKTMTGGYGFKNVRQHAS*LPVSDM Trigger: CATATCCGATACCGGGAGCCACGACGCATGCTGGCG...TACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| 3UTR CAA 72 bp | ATCCCAGCTCTCAGGAGGTCAGGCCTGGTTTACATATaGAGTTCTAGACTGACCAGGGTGAGACCATGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IPALRRSGLVYI*SSRLTRVRPCL Trigger: GAGACATGGTCTCACCCTGGTCAGTCTAGAACTCAATATGTAAACCAGGCCTGACCTCCTGAGAGCTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045697.12 |
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| CDS-3UTR TCA 90 bp | TTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGTAGCGCAGTCGAGTGAGTaGAGCCCTGCTGCAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FHAKEDNDRWLWFQERMVAQSSE*SPAAVS Trigger: GCTGACTGCAGCAGGGCTTCACTCACTCGACTGCGC...TACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR TCA 90 bp | GCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGCTCTTCTGCTGGAGCTaGGCCTCCCGTTTTCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: ASTQKKTMTGGYGFKNVWLFCWS*ASRFRN Trigger: GTTCCGAAAACGGGAGGCTCAGCTCCAGCAGAAGAG...CCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR GCA 90 bp | GGCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGATAGTGGAGCCGTCCTaGTTGACCAAGAGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: GFHAKEDNDRWLWFQERMIVEPS*LTKSTG Trigger: CCCTGTGCTCTTGGTCAAGCAGGACGGCTCCACTAT...CATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR GCA 90 bp | GCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGATAGTGGAGCCGTCCTaGTTGACCAAGAGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: ASTQKKTMTGGYGFKNVWIVEPS*LTKSTG Trigger: CCCTGTGCTCTTGGTCAAGCAGGACGGCTCCACTAT...CCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR CCA 90 bp | TTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGTACGCCAGCATGCGTCGTaGCTCCCGGTATCGGATATG | + |
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Preference number: 4 (lower is better) Translates to: FHAKEDNDRWLWFQERMVRQHAS*LPVSDM Trigger: CATATCCGATACCGGGAGCCACGACGCATGCTGGCG...TACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR CCA 90 bp | GCTTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGACTGTCCACTACCTCTaGCTCTTCTTCCCTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: ASTQKKTMTGGYGFKNVWTVHYL*LFFPLL Trigger: CAGAAGAGGGAAGAAGAGCCAGAGGTAGTGGACAGT...CCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR GCA 90 bp | GCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGTAAATAGAATAGTGGAGCCGTCCTaGTTGACCAAGAGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: AKEDNDRWLWFQERMVNRIVEPS*LTKSTG Trigger: CCCTGTGCTCTTGGTCAAGCAGGACGGCTCCACTAT...TCTATTTACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS-3UTR CCA 90 bp | TTCCACGCAAAAGAAGACAATGACAGGTGGTTATGGTTTCAAGAACGTATGGTAACTGTCCACTACCTCTaGCTCTTCTTCCCTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: FHAKEDNDRWLWFQERMVTVHYL*LFFPLL Trigger: CAGAAGAGGGAAGAAGAGCCAGAGGTAGTGGACAGT...TACCATACGTTCTTGAAACCATAACCACCTGTCATTGTCTTCTTTTGCGTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045697.12 ENSMUST00000108785.2 ENSMUST00000108786.8 |
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| CDS TCA 90 bp | AAACTGTCCACTACCTCTGGCTCTTCTTCCCTCTTCTGCTGGAGCTaGGCCTCCCGTTTTCGGAACCGGGCCCTGCGCTCTTCTGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: KLSTTSGSSSLFCWS*ASRFRNRALRSSGD Trigger: GTCTCCAGAAGAGCGCAGGGCCCGGTTCCGAAAACGGGAGGCTCAGCTCCAGCAGAAGAGGGAAGAAGAGCCAGAGGTAGTGGACAGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000045697.12 ENSMUST00000108784.4 ENSMUST00000108785.2 ENSMUST00000108786.8 ENSMUST00000108787.9 |
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| CDS CCA 72 bp | ATCGCCAGCATGCGTCGTGGCTCCCGGTATCGGATATaGATAGTGGAGCCGTCCTGCTTGACCAAGAGCACA | + |
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Preference number: 6 (lower is better) Translates to: IASMRRGSRYRI*IVEPSCLTKST Trigger: TGTGCTCTTGGTCAAGCAGGACGGCTCCACTATCCATATCCGATACCGGGAGCCACGACGCATGCTGGCGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000045697.12 ENSMUST00000108784.4 ENSMUST00000108785.2 ENSMUST00000108786.8 ENSMUST00000108787.9 |
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