Pregenerated sensors for MRPL54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034932Ensembl transcript IDs: ENSMUST00000046114.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGAGCAGGTGAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGCTaGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCCCATCATCACA | + |
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Preference number: 1 (lower is better) Translates to: RAGEGQRTQFSPCSG*PGFQAVSRQVPIIT Trigger: TGTGATGATGGGCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTCACCTGCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| 3UTR TCA 90 bp | GTATTTATTTCGAGTGTGCATGACCTGCACGGCATGGCGAGCAGGTaGAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGCTGGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: VFISSVHDLHGMASR*RSEDSVLSLLWLAR Trigger: CCTGGCCAGCCAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTCACCTGCTCGCCATGCCGTGCAGGTCATGCACACTCGAAATAAATAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| 3UTR CCA 72 bp | GAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGCTaGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: EGQRTQFSPCSG*PGFQAVSRQVP Trigger: GGGCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| 3UTR GCA 72 bp | AGGTCCCTTTGGTATTTATTTCGAGTGTGCATGACCTaGACGGCATGGCGAGCAGGTGAAGGTCAGAGGACT | + |
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Preference number: 3 (lower is better) Translates to: RSLWYLFRVCMT*TAWRAGEGQRT Trigger: AGTCCTCTGACCTTCACCTGCTCGCCATGCCGTGCAGGTCATGCACACTCGAAATAAATACCAAAGGGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR TCA 90 bp | AGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCATCCTCCAGGTCTTCTaGGGACCGGGAGCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SSLPALAGQGSRQSPVRCILQVF*GPGAPG Trigger: CCCGGGCGCTCCCGGTCCTCAGAAGACCTGGAGGAT...GCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR GCA 90 bp | GAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCACGGCCACGCCGCCCTTaGCGCCCTTGCCAACTGGCT | + |
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Preference number: 4 (lower is better) Translates to: EGQRTQFSPCSGWPGFQARPRRP*RPCQLA Trigger: AGCCAGTTGGCAAGGGCGGCAAGGGCGGCGTGGCCG...TGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR GCA 90 bp | TCAGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGGGGTACTCGGAGTCTaGCTTCAGGGCCACATCCTG | + |
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Preference number: 4 (lower is better) Translates to: SVLSLLWLARVPGSLPSGGVLGV*LQGHIL Trigger: CAGGATGTGGCCCTGAAGGCAGACTCCGAGTACCCC...ACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR TCA 90 bp | GAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCACCATGGCATGTGTGGTaGGCTGAGTGGGGTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: EGQRTQFSPCSGWPGFQAPWHVW*AEWGLC Trigger: GCACAGACCCCACTCAGCTCACCACACATGCCATGG...TGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR TCA 90 bp | CTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCCCATCTTCCTTGTAGATGTTaGCCCCCATGGCATGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LSLLWLARVPGSLPSGAHLPCRC*PPWHVW Trigger: CCACACATGCCATGGGGGTCAACATCTACAAGGAAG...ATGGGCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR GCA 90 bp | TCAGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTACAGCTTCTTGTTCTTaGTCAGCCGGTTGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: SVLSLLWLARVPGSLPSGTASCS*SAGCGA Trigger: GGCGCCACAACCGGCTGAGCAAGAACAAGAAGCTGT...ACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR CCA 90 bp | GCACGGCATGGCGAGCAGGTGAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGGGACCCAAGTTCACCTaGAACAGCCATGTGGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: ARHGEQVKVRGLSSLPALGPKFT*NSHVGY Trigger: GTACCCCACATGGCTGTTCCAGGTGAACTTGGGTCC...CAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTCACCTGCTCGCCATGCCGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR CCA 90 bp | AGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCTTGCTCAGCCGGTTGTaGCGCCAGATATTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: SSLPALAGQGSRQSPVRCLLSRL*RQIFCL Trigger: CAAACAGAATATCTGGCGCCACAACCGGCTGAGCAA...GCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR CCA 90 bp | TCAGTTCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGTTCCTCTAGCTTTTTaGGGGGACCCAAGTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: SVLSLLWLARVPGSLPSGVPLAF*GDPSSP Trigger: AGGTGAACTTGGGTCCCCCCAAAAAGCTAGAGGAAC...ACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGAACTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS GCA 90 bp | ATAGAGAATCCTCCAGGTCTTCTGAGGACCGGGAGCGCCCGGGGATaGCAGCGGGCCCACACCCGGGAAGCCCGGAGGAGATGGGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: IENPPGLLRTGSARG*QRAHTREARRRWAA Trigger: GGCCGCCCATCTCCTCCGGGCTTCCCGGGTGTGGGCCCGCTGGCATCCCCGGGCGCTCCCGGTCCTCAGAAGACCTGGAGGATTCTCTAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR CAA 90 bp | TCTCTCCCTGCTCTGGCTGGCCAGGGTTCCAGGCAGTCTCCCGTCAGGTGCCCATTCTTGCTCAGCCGGTaGTGGCGCCAGATATTCTGT | + |
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Preference number: 5 (lower is better) Translates to: SLPALAGQGSRQSPVRCPFLLSR*WRQIFC Trigger: ACAGAATATCTGGCGCCACAACCGGCTGAGCAAGAA...TGGGCACCTGACGGGAGACTGCCTGGAACCCTGGCCAGCCAGAGCAGGGAGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS GCA 90 bp | GGGACCCAAGTTCACCTGGAACAGCCATGTGGGGTACTCGGAGTCTaGCTTCAGGGCCACATCCTGGCCTTCCTTGTAGATGTTGACCCC | + |
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Preference number: 5 (lower is better) Translates to: GTQVHLEQPCGVLGV*LQGHILAFLVDVDP Trigger: GGGGTCAACATCTACAAGGAAGGCCAGGATGTGGCCCTGAAGGCAGACTCCGAGTACCCCACATGGCTGTTCCAGGTGAACTTGGGTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS-3UTR CAA 90 bp | GCACGGCATGGCGAGCAGGTGAAGGTCAGAGGACTCAGTTCTCTCCCTGCTCTGTACAGCTTCTTGTTCTaGCTCAGCCGGTTGTGGCGC | + |
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Preference number: 5 (lower is better) Translates to: ARHGEQVKVRGLSSLPALYSFLF*LSRLWR Trigger: GCGCCACAACCGGCTGAGCAAGAACAAGAAGCTGTA...CAGAGCAGGGAGAGAACTGAGTCCTCTGACCTTCACCTGCTCGCCATGCCGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS GCA 72 bp | CCTCCAGGTCTTCTGAGGACCGGGAGCGCCCGGGGATaGCAGCGGGCCCACACCCGGGAAGCCCGGAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: PPGLLRTGSARG*QRAHTREARRR Trigger: TCTCCTCCGGGCTTCCCGGGTGTGGGCCCGCTGGCATCCCCGGGCGCTCCCGGTCCTCAGAAGACCTGGAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS CAA 72 bp | TCGGGGTCCTTCAGGGCCTCAGCGGCCACGCCGCCCTaGCCGCCCTTGCCAACTGGCTTTTTAGCATATTCC | + |
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Preference number: 6 (lower is better) Translates to: SGSFRASAATPP*PPLPTGFLAYS Trigger: GGAATATGCTAAAAAGCCAGTTGGCAAGGGCGGCAAGGGCGGCGTGGCCGCTGAGGCCCTGAAGGACCCCGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS CAA 90 bp | GTGCACACCTCGGGGTCCTTCAGGGCCTCAGCGGCCACGCCGCCCTaGCCGCCCTTGCCAACTGGCTTTTTAGCATATTCCCGGATAGAG | + |
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Preference number: 6 (lower is better) Translates to: VHTSGSFRASAATPP*PPLPTGFLAYSRIE Trigger: CTCTATCCGGGAATATGCTAAAAAGCCAGTTGGCAAGGGCGGCAAGGGCGGCGTGGCCGCTGAGGCCCTGAAGGACCCCGAGGTGTGCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS CAA 72 bp | TTCAGGGCCTCAGCGGCCACGCCGCCCTTGCCGCCCTaGCCAACTGGCTTTTTAGCATATTCCCGGATAGAG | + |
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Preference number: 6 (lower is better) Translates to: FRASAATPPLPP*PTGFLAYSRIE Trigger: CTCTATCCGGGAATATGCTAAAAAGCCAGTTGGCAAGGGCGGCAAGGGCGGCGTGGCCGCTGAGGCCCTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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| CDS GCA 72 bp | TCTTGCTCAGCCGGTTGTGGCGCCAGATATTCTGTTTaGGAAGTAGTCGCCAGTACTCTCGGGACTCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: SCSAGCGARYSV*EVVASTLGTLV Trigger: AACCAGAGTCCCGAGAGTACTGGCGACTACTTCGCAAACAGAATATCTGGCGCCACAACCGGCTGAGCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046114.5 |
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