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Pregenerated sensors for MRPL53 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030037

Ensembl transcript IDs: ENSMUST00000113938.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTGTTAGTGTTCTTGCTCCGTATCATGAGCTCCATGCAGCATTTTaGGTGATTAAAGCCCAGGTCTTCTCAGACCACTCACTGTCTTTA +
Preference number: 1 (lower is better)
Translates to: VVSVLAPYHELHAAF*VIKAQVFSDHSLSL
Trigger: TAAAGACAGTGAGTGGTCTGAGAAGACCTGGGCTTTAATCACTCAAAATGCTGCATGGAGCTCATGATACGGAGCAAGAACACTAACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
3UTR TCA 72 bp TTGCTCCGTATCATGAGCTCCATGCAGCATTTTGAGTaGTTAAAGCCCAGGTCTTCTCAGACCACTCACTGT +
Preference number: 3 (lower is better)
Translates to: LLRIMSSMQHFE*LKPRSSQTTHC
Trigger: ACAGTGAGTGGTCTGAGAAGACCTGGGCTTTAATCACTCAAAATGCTGCATGGAGCTCATGATACGGAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS-3UTR CCA 90 bp ACTGAGAAAGAAAAATTCCAATTTGTCGGGGCCCTTCACCACCCAAACTTACTTTCGCTGCTCACCGTCTaGAGGAAGGTCCTCGTGGAC +
Preference number: 4 (lower is better)
Translates to: TEKEKFQFVGALHHPNLLSLLTV*RKVLVD
Trigger: GTCCACGAGGACCTTCCTCCAGACGGTGAGCAGCGA...AAGTAAGTTTGGGTGGTGAAGGGCCCCGACAAATTGGAATTTTTCTTTCTCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
3UTR CAA 72 bp CCACCCAAACTTACTTATCTTGCCCCAGAAGCCCTGTaGTTAGTGTTCTTGCTCCGTATCATGAGCTCCATG +
Preference number: 4 (lower is better)
Translates to: PPKLTYLAPEAL*LVFLLRIMSSM
Trigger: CATGGAGCTCATGATACGGAGCAAGAACACTAACAACAGGGCTTCTGGGGCAAGATAAGTAAGTTTGGGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS GCA 90 bp TCAGCGGCGGGTACTCGTACCCGGGGCGACCTTGTCTGCGCCCGGTaGAGATGCTGCCGCGGCGTTCCTGTCCCGGATGTGGGAGGCCAA +
Preference number: 5 (lower is better)
Translates to: SAAGTRTRGDLVCAR*RCCRGVPVPDVGGQ
Trigger: TTGGCCTCCCACATCCGGGACAGGAACGCCGCGGCAGCATCTGCACCGGGCGCAGACAAGGTCGCCCCGGGTACGAGTACCCGCCGCTGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS TCA 90 bp AGGGCTCAGAGCCGTCGTGCCTCACGTCGGCGATCACAGAGCAGTTaGGGTTGGTGGCGCGGACTTTCTCGCTGCTCACCGTCTGGAGGA +
Preference number: 5 (lower is better)
Translates to: RAQSRRASRRRSQSS*GWWRGLSRCSPSGG
Trigger: TCCTCCAGACGGTGAGCAGCGAGAAAGTCCGCGCCACCAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCTCTGAGCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS GCA 90 bp TACCCATCTCCGAACAACACGTCCACGCAGGGCTCAGAGCCGTCGTaGCTCACGTCGGCGATCACAGAGCAGTTGAGGTTGGTGGCGCGG +
Preference number: 5 (lower is better)
Translates to: YPSPNNTSTQGSEPS*LTSAITEQLRLVAR
Trigger: CCGCGCCACCAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCTCTGAGCCCTGCGTGGACGTGTTGTTCGGAGATGGGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS TCA 90 bp AGGAAGGTCCTCGTGGACTCCACGTTCTTCTCAAACGGGCAGAACTaGACTCGAACCAGCTTGACCGGCCGTAGTCCGAGCCGAGCCAAA +
Preference number: 5 (lower is better)
Translates to: RKVLVDSTFFSNGQN*TRTSLTGRSPSRAK
Trigger: TTTGGCTCGGCTCGGACTACGGCCGGTCAAGCTGGTTCGAGTTCAGTTCTGCCCGTTTGAGAAGAACGTGGAGTCCACGAGGACCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS GCA 72 bp CGTACCCGGGGCGACCTTGTCTGCGCCCGGTGCAGATaGTGCCGCGGCGTTCCTGTCCCGGATGTGGGAGGC +
Preference number: 6 (lower is better)
Translates to: RTRGDLVCARCR*CRGVPVPDVGG
Trigger: GCCTCCCACATCCGGGACAGGAACGCCGCGGCAGCATCTGCACCGGGCGCAGACAAGGTCGCCCCGGGTACG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS GCA 72 bp ACCCGGGGCGACCTTGTCTGCGCCCGGTGCAGATGCTaGCGCGGCGTTCCTGTCCCGGATGTGGGAGGCCAA +
Preference number: 6 (lower is better)
Translates to: TRGDLVCARCRC*RGVPVPDVGGQ
Trigger: TTGGCCTCCCACATCCGGGACAGGAACGCCGCGGCAGCATCTGCACCGGGCGCAGACAAGGTCGCCCCGGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS CAA 90 bp CAGGGCTCAGAGCCGTCGTGCCTCACGTCGGCGATCACAGAGCAGTaGAGGTTGGTGGCGCGGACTTTCTCGCTGCTCACCGTCTGGAGG +
Preference number: 6 (lower is better)
Translates to: QGSEPSCLTSAITEQ*RLVARTFSLLTVWR
Trigger: CCTCCAGACGGTGAGCAGCGAGAAAGTCCGCGCCACCAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCTCTGAGCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS TCA 72 bp AGCCGTCGTGCCTCACGTCGGCGATCACAGAGCAGTTaGGGTTGGTGGCGCGGACTTTCTCGCTGCTCACCG +
Preference number: 6 (lower is better)
Translates to: SRRASRRRSQSS*GWWRGLSRCSP
Trigger: CGGTGAGCAGCGAGAAAGTCCGCGCCACCAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS CAA 72 bp GAGCCGTCGTGCCTCACGTCGGCGATCACAGAGCAGTaGAGGTTGGTGGCGCGGACTTTCTCGCTGCTCACC +
Preference number: 6 (lower is better)
Translates to: EPSCLTSAITEQ*RLVARTFSLLT
Trigger: GGTGAGCAGCGAGAAAGTCCGCGCCACCAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS GCA 72 bp CCGAACAACACGTCCACGCAGGGCTCAGAGCCGTCGTaGCTCACGTCGGCGATCACAGAGCAGTTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: PNNTSTQGSEPS*LTSAITEQLRL
Trigger: CAACCTCAACTGCTCTGTGATCGCCGACGTGAGGCACGACGGCTCTGAGCCCTGCGTGGACGTGTTGTTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5
CDS TCA 72 bp TCTTCTCAAACGGGCAGAACTGAACTCGAACCAGCTTaGCCGGCCGTAGTCCGAGCCGAGCCAAAGCCGCCG +
Preference number: 6 (lower is better)
Translates to: SSQTGRTELEPA*PAVVRAEPKPP
Trigger: CGGCGGCTTTGGCTCGGCTCGGACTACGGCCGGTCAAGCTGGTTCGAGTTCAGTTCTGCCCGTTTGAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113938.5