Pregenerated sensors for MRPL52 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010406Ensembl transcript IDs: ENSMUST00000010550.12, ENSMUST00000196273.2, ENSMUST00000199195.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GTGGGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCGCAGCCAGCCCTTGCTaGAGTCGCCACTGGCCACCG | + |
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Preference number: 4 (lower is better) Translates to: VGQELLFIDSEVGFSVKSAASPC*SRHWPP Trigger: CGGTGGCCAGTGGCGACTCCAGCAAGGGCTGGCTGC...GGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCCTTAGTCAGGGAGCTCCGTaGGGGGCCCATAGCCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: GQELLFIDSEVGFSVKSLSQGAP*GAHSRK Trigger: CTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGACT...AAGGGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR CCA 90 bp | GGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCCTTCATAGCCGGAAGGGTTaGCAGCCAGCCCTTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GQELLFIDSEVGFSVKSLHSRKG*QPALAG Trigger: TCCAGCAAGGGCTGGCTGCCAACCCTTCCGGCTATG...AAGGGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR TCA 90 bp | GTGGGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCGCAATTTCTGCTGCCTaGGCTTCCATGCCTGTATTC | + |
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Preference number: 4 (lower is better) Translates to: VGQELLFIDSEVGFSVKSAISAA*ASMPVF Trigger: GAATACAGGCATGGAAGCTCAGGCAGCAGAAATTGC...GGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR GCA 90 bp | GTGGGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCTCCTGCAATTTCTGCTaGCTGAGCTTCCATGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: VGQELLFIDSEVGFSVKSSCNFC*LSFHAC Trigger: ACAGGCATGGAAGCTCAGGCAGCAGAAATTGCAGGA...GGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCCTTTCTTCCTGCAATTTCTaGTGCCTGAGCTTCCATGCC | + |
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Preference number: 4 (lower is better) Translates to: GQELLFIDSEVGFSVKSLSSCNF*CLSFHA Trigger: GGCATGGAAGCTCAGGCAGCAGAAATTGCAGGAAGA...AAGGGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS-3UTR GCA 90 bp | GTGGGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCTTCTTCCTTTCTTCCTaGAATTTCTGCTGCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: VGQELLFIDSEVGFSVKSFFLSS*NFCCLS Trigger: GCTCAGGCAGCAGAAATTGCAGGAAGAAAGGAAGAA...GGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS TCA 90 bp | GGGGTGCAGGGCGGCCATCCGCGAAGGACCAGTCAGGGAGCTCCGTaGGGGGCCCATAGCCGGAAGGGTTGGCAGCCAGCCCTTGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: GVQGGHPRRTSQGAP*GAHSRKGWQPALAG Trigger: TCCAGCAAGGGCTGGCTGCCAACCCTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGACTGGTCCTTCGCGGATGGCCGCCCTGCACCCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS GCA 90 bp | GCCCTTGCTGGAGTCGCCACTGGCCACCGGCCCGCGCCACTACGCTaGAGTGCAATCTCCGGACACTGGACAGCCAGGTCCCTAAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: ALAGVATGHRPAPLR*SAISGHWTARSLRQ Trigger: CTGCCTTAGGGACCTGGCTGTCCAGTGTCCGGAGATTGCACTGCAGCGTAGTGGCGCGGGCCGGTGGCCAGTGGCGACTCCAGCAAGGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS TCA 90 bp | CAGCAGTACAACTCGTCTCCGCGAAGGACCAGTCAGGGAGCTCCGTaGGGGGCCCATAGCCGGAAGGGTTGGCAGCCAGCCCTTGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: QQYNSSPRRTSQGAP*GAHSRKGWQPALAG Trigger: TCCAGCAAGGGCTGGCTGCCAACCCTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGACTGGTCCTTCGCGGAGACGAGTTGTACTGCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS GCA 90 bp | CTTCTCCCTTTGAGCTTTTCTTCGAAGTTGGCCTTTCATTGGGGGTaGAGGGCGGCCATCCGCGAAGGACCAGTCAGGGAGCTCCGTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLPLSFSSKLAFHWG*RAAIREGPVRELRE Trigger: CTCACGGAGCTCCCTGACTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS CCA 90 bp | TGCAAGCTTCTCCCTTTGAGCTTTTCTTCGAAGTTGGCCTTTCATTaGGGGTGCAGGGCGGCCATCCGCGAAGGACCAGTCAGGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: CKLLPLSFSSKLAFH*GCRAAIREGPVREL Trigger: GAGCTCCCTGACTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAGCTTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS-3UTR CAA 90 bp | GTGGGGCAGGAGCTGCTTTTTATTGATTCGGAAGTGGGCTTCTCAGTAAAGTCCGTTGGCAGCCAGCCCTaGCTGGAGTCGCCACTGGCC | + |
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Preference number: 5 (lower is better) Translates to: VGQELLFIDSEVGFSVKSVGSQP*LESPLA Trigger: GGCCAGTGGCGACTCCAGCAAGGGCTGGCTGCCAAC...GGACTTTACTGAGAAGCCCACTTCCGAATCAATAAAAAGCAGCTCCTGCCCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS GCA 90 bp | TTAGGTTTGAGATCATGTTCCTTCTTCCTTTCTTCCTGCAATTTCTaGTGCCTGAGCTTCCATGCCTGTATTCCAGCATCCATTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: LGLRSCSFFLSSCNF*CLSFHACIPASISC Trigger: ACAGGAAATGGATGCTGGAATACAGGCATGGAAGCTCAGGCAGCAGAAATTGCAGGAAGAAAGGAAGAAGGAACATGATCTCAAACCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010550.12 ENSMUST00000199195.3 |
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| CDS TCA 72 bp | GGCGGCCATCCGCGAAGGACCAGTCAGGGAGCTCCGTaGGGGGCCCATAGCCGGAAGGGTTGGCAGCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GGHPRRTSQGAP*GAHSRKGWQPA Trigger: GGCTGGCTGCCAACCCTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGACTGGTCCTTCGCGGATGGCCGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS GCA 72 bp | GGAGTCGCCACTGGCCACCGGCCCGCGCCACTACGCTaGAGTGCAATCTCCGGACACTGGACAGCCAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: GVATGHRPAPLR*SAISGHWTARS Trigger: GGACCTGGCTGTCCAGTGTCCGGAGATTGCACTGCAGCGTAGTGGCGCGGGCCGGTGGCCAGTGGCGACTCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS GCA 72 bp | CGCCACTGGCCACCGGCCCGCGCCACTACGCTGCAGTaGAATCTCCGGACACTGGACAGCCAGGTCCCTAAG | + |
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Preference number: 6 (lower is better) Translates to: RHWPPARATTLQ*NLRTLDSQVPK Trigger: CTTAGGGACCTGGCTGTCCAGTGTCCGGAGATTGCACTGCAGCGTAGTGGCGCGGGCCGGTGGCCAGTGGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS TCA 72 bp | AACTCGTCTCCGCGAAGGACCAGTCAGGGAGCTCCGTaGGGGGCCCATAGCCGGAAGGGTTGGCAGCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: NSSPRRTSQGAP*GAHSRKGWQPA Trigger: GGCTGGCTGCCAACCCTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGACTGGTCCTTCGCGGAGACGAGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196273.2 |
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| CDS GCA 72 bp | TTGAGCTTTTCTTCGAAGTTGGCCTTTCATTGGGGGTaGAGGGCGGCCATCCGCGAAGGACCAGTCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LSFSSKLAFHWG*RAAIREGPVRE Trigger: CTCCCTGACTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS CCA 72 bp | CTCCCTTTGAGCTTTTCTTCGAAGTTGGCCTTTCATTaGGGGTGCAGGGCGGCCATCCGCGAAGGACCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LPLSFSSKLAFH*GCRAAIREGPV Trigger: GACTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS CAA 90 bp | TTGCAAGCTTCTCCCTTTGAGCTTTTCTTCGAAGTTGGCCTTTCATaGGGGGTGCAGGGCGGCCATCCGCGAAGGACCAGTCAGGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: LQASPFELFFEVGLS*GVQGGHPRRTSQGA Trigger: AGCTCCCTGACTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAGCTTGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS CAA 90 bp | TACAACTCGTCTTGCAAGCTTCTCCCTTTGAGCTTTTCTTCGAAGTaGGCCTTTCATTGGGGGTGCAGGGCGGCCATCCGCGAAGGACCA | + |
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Preference number: 6 (lower is better) Translates to: YNSSCKLLPLSFSSK*AFHWGCRAAIREGP Trigger: TGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAGCTTGCAAGACGAGTTGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS TCA 72 bp | GTCAGCAGTACAACTCGTCTTGCAAGCTTCTCCCTTTaGGCTTTTCTTCGAAGTTGGCCTTTCATTGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: VSSTTRLASFSL*AFLRSWPFIGG Trigger: ACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAGCTTGCAAGACGAGTTGTACTGCTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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| CDS CAA 72 bp | TGTCAGCAGTACAACTCGTCTTGCAAGCTTCTCCCTTaGAGCTTTTCTTCGAAGTTGGCCTTTCATTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: CQQYNSSCKLLP*SFSSKLAFHWG Trigger: CCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAGAAGCTTGCAAGACGAGTTGTACTGCTGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010550.12 |
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