Pregenerated sensors for MRPL50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044018Ensembl transcript IDs: ENSMUST00000057829.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGAACCCATGCAGAAGGAAGGTCTGATTTTCCTTCCACCTGCTTaGCTTCACTCGACTGACAAGTACATCCATCTTGTTCCTGCCATT | + |
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Preference number: 1 (lower is better) Translates to: AEPMQKEGLIFLPPA*LHSTDKYIHLVPAI Trigger: AATGGCAGGAACAAGATGGATGTACTTGTCAGTCGAGTGAAGGCAAGCAGGTGGAAGGAAAATCAGACCTTCCTTCTGCATGGGTTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR TCA 90 bp | ACAATCAACAACTCAGCGCCTCTTAGAGCCCTAACATTTATCCTCTaGAGAACCCCCAGAATTCAAAACCTCACACAATCACAGAAACCA | + |
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Preference number: 1 (lower is better) Translates to: TINNSAPLRALTFIL*RTPRIQNLTQSQKP Trigger: TGGTTTCTGTGATTGTGTGAGGTTTTGAATTCTGGGGGTTCTTCAGAGGATAAATGTTAGGGCTCTAAGAGGCGCTGAGTTGTTGATTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CCA 90 bp | CATGCTGTCACTTCTGTTCCTCCCAACAACCCTGACTATATACCTTaGAATAACAAAGTTTTCATAAGTTATCAAGACTTGATTTTATTG | + |
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Preference number: 1 (lower is better) Translates to: HAVTSVPPNNPDYIP*NNKVFISYQDLILL Trigger: CAATAAAATCAAGTCTTGATAACTTATGAAAACTTTGTTATTCCAAGGTATATAGTCAGGGTTGTTGGGAGGAACAGAAGTGACAGCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR TCA 90 bp | GAAACCATCTGCAGCTGGAAGAATCAAGCCCCTGCTAGAGCACAAGGCAAATTAGCGGCCAGCATGAATTaGAGGTCAGTAGGCTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: ETICSWKNQAPARAQGKLAASMN*RSVGFS Trigger: TGAAAAGCCTACTGACCTTCAATTCATGCTGGCCGC...TAATTTGCCTTGTGCTCTAGCAGGGGCTTGATTCTTCCAGCTGCAGATGGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CCA 90 bp | AAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCAGACGAAACCATCTGCAGCTaGAAGAATCAAGCCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: KHSGTFYNVHQMFTFPSDETICS*KNQAPA Trigger: AGCAGGGGCTTGATTCTTCCAGCTGCAGATGGTTTC...GTCTGAAGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR TCA 90 bp | GGAGTAAAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTGCAGAAGGAAGGTCTaGTTTTCCTTCCACCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: GVKHSGTFYNVHQMFTFPCRRKV*FSFHLL Trigger: AAGCAGGTGGAAGGAAAATCAGACCTTCCTTCTGCA...AGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTTTACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR GCA 90 bp | AGATGTTCACGTTTCCTTCAGACATCTAATACATTTTGTTTGGTAGCTGGTCTTGGGGGAGGGGAGATGTaGTCTTCTACAAGGAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: RCSRFLQTSNTFCLVAGLGGGEM*SSTRSK Trigger: TTTGCTCCTTGTAGAAGAGCACATCTCCCCTCCCCC...AAGACCAGCTACCAAACAAAATGTATTAGATGTCTGAAGGAAACGTGAACATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CCA 90 bp | GTTGCCCTTTCTTCCACCTTTACTTATGGAGTAAAACACAGTGGAACTTTCTATATTAGTCAGCTGCTGTaGACAAGTCTGAAGCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: VALSSTFTYGVKHSGTFYISQLL*TSLKQP Trigger: GGGCTGCTTCAGACTTGTCCACAGCAGCTGACTAAT...ATAGAAAGTTCCACTGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAGGGCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR TCA 90 bp | AAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCAGACAAACGTTTTCTTTGTTaGTTCTCCTTTGGGGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: KHSGTFYNVHQMFTFPSDKRFLC*FSFGGG Trigger: CCCTCCCCCAAAGGAGAATCAACAAAGAAAACGTTT...GTCTGAAGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR TCA 90 bp | GGAGTAAAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTGCCCAGATCCTAATGTaGGCTAACATCATAAACCTC | + |
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Preference number: 2 (lower is better) Translates to: GVKHSGTFYNVHQMFTFPAQILM*ANIINL Trigger: GAGGTTTATGATGTTAGCTCACATTAGGATCTGGGC...AGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTTTACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CAA 90 bp | GGCATCAAGTTCCTTGGGGCAAGCATCAGGACATCTAATTTCTTCTaGTTGTTTCTTCTTTGTTCACGAGTGCTTAACAAATCACAACCA | + |
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Preference number: 2 (lower is better) Translates to: GIKFLGASIRTSNFF*LFLLCSRVLNKSQP Trigger: TGGTTGTGATTTGTTAAGCACTCGTGAACAAAGAAGAAACAACAAGAAGAAATTAGATGTCCTGATGCTTGCCCCAAGGAACTTGATGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR GCA 90 bp | GGAGTAAAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCTTGTTCCTGCCATTaGTGCATCTTTTCGTCCATA | + |
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Preference number: 2 (lower is better) Translates to: GVKHSGTFYNVHQMFTFPSCSCH*CIFSSI Trigger: TATGGACGAAAAGATGCAGCAATGGCAGGAACAAGA...AGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTTTACTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CAA 90 bp | ATCAAGTTCCTTGGGGCAAGCATCAGGACATCTAATTTCTTCTTGTaGTTTCTTCTTTGTTCACGAGTGCTTAACAAATCACAACCAACA | + |
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Preference number: 2 (lower is better) Translates to: IKFLGASIRTSNFFL*FLLCSRVLNKSQPT Trigger: TGTTGGTTGTGATTTGTTAAGCACTCGTGAACAAAGAAGAAACAACAAGAAGAAATTAGATGTCCTGATGCTTGCCCCAAGGAACTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTTCCACCTTTACTTATGGAGTAAAACACAGTGGAACTTTCTATAATGTGCTAACATTTATCCTCTaGAGAACCCCCAGAATTCAA | + |
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Preference number: 2 (lower is better) Translates to: LSSTFTYGVKHSGTFYNVLTFIL*RTPRIQ Trigger: TTGAATTCTGGGGGTTCTTCAGAGGATAAATGTTAG...CACATTATAGAAAGTTCCACTGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR GCA 90 bp | GTTGCCCTTTCTTCCACCTTTACTTATGGAGTAAAACACAGTGGAACTTTCTATCAAAGAAAACATCTTTaGAATGGCCTCTTATCTGAA | + |
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Preference number: 2 (lower is better) Translates to: VALSSTFTYGVKHSGTFYQRKHL*NGLLSE Trigger: TTCAGATAAGAGGCCATTGCAAAGATGTTTTCTTTG...ATAGAAAGTTCCACTGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAGGGCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR TCA 72 bp | AGCAACAGCTTGGTACTGCTGAGACAGTCAGCCTCGTaGAGGGTGACACAGCCATTGATGAAGTGCCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: SNSLVLLRQSAS*RVTQPLMKCPD Trigger: ATCTGGGCACTTCATCAATGGCTGTGTCACCCTTCACGAGGCTGACTGTCTCAGCAGTACCAAGCTGTTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CAA 90 bp | GCTGCTGTGGACAAGTCTGAAGCAGCCCCAGATTCCACACCTACAGTATTTCTGTTTGTTGATTCTCCTTaGGGGGAGGGGAGATGTGCT | + |
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Preference number: 3 (lower is better) Translates to: AAVDKSEAAPDSTPTVFLFVDSP*GEGRCA Trigger: AGCACATCTCCCCTCCCCCAAAGGAGAATCAACAAA...CAGAAATACTGTAGGTGTGGAATCTGGGGCTGCTTCAGACTTGTCCACAGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR TCA 72 bp | TCTGATTTTCCTTCCACCTGCTTGCCTTCACTCGACTaGCAAGTACATCCATCTTGTTCCTGCCATTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: SDFPSTCLPSLD*QVHPSCSCHCC Trigger: GCAGCAATGGCAGGAACAAGATGGATGTACTTGTCAGTCGAGTGAAGGCAAGCAGGTGGAAGGAAAATCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CCA 72 bp | TCAAAACCTCACACAATCACAGAAACCATCTGCAGCTaGAAGAATCAAGCCCCTGCTAGAGCACAAGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: SKPHTITETICS*KNQAPARAQGK Trigger: TTTGCCTTGTGCTCTAGCAGGGGCTTGATTCTTCCAGCTGCAGATGGTTTCTGTGATTGTGTGAGGTTTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CAA 90 bp | AAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCAGACGCTCTCAGCAACAGCTaGGTACTGCTGAGACAGTCA | + |
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Preference number: 3 (lower is better) Translates to: KHSGTFYNVHQMFTFPSDALSNS*VLLRQS Trigger: TGACTGTCTCAGCAGTACCAAGCTGTTGCTGAGAGC...GTCTGAAGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR GCA 72 bp | ATGCAGAAGGAAGGTCTGATTTTCCTTCCACCTGCTTaGCTTCACTCGACTGACAAGTACATCCATCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: MQKEGLIFLPPA*LHSTDKYIHLV Trigger: AACAAGATGGATGTACTTGTCAGTCGAGTGAAGGCAAGCAGGTGGAAGGAAAATCAGACCTTCCTTCTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CAA 90 bp | AAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCAGACGGTCTTTTGGCTACTTaGTGGGTTCTTTTTCTTCCG | + |
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Preference number: 3 (lower is better) Translates to: KHSGTFYNVHQMFTFPSDGLLAT*WVLFLP Trigger: CGGAAGAAAAAGAACCCACAAAGTAGCCAAAAGACC...GTCTGAAGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR TCA 72 bp | CAGGCAAAGAAAACATCTTTGCAATGGCCTCTTATCTaGAGCCCGAGGTACTTAGTATTTTTGTGTTATGGT | + |
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Preference number: 3 (lower is better) Translates to: QAKKTSLQWPLI*SPRYLVFLCYG Trigger: ACCATAACACAAAAATACTAAGTACCTCGGGCTTCAGATAAGAGGCCATTGCAAAGATGTTTTCTTTGCCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTTCCACCTTTACTTATGGAGTAAAACACAGTGGAACTTTCTATAATGTGATCTTGTTCCTGCCATaGCTGCATCTTTTCGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: LSSTFTYGVKHSGTFYNVILFLP*LHLFVH Trigger: ATGGACGAAAAGATGCAGCAATGGCAGGAACAAGAT...CACATTATAGAAAGTTCCACTGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR-3UTR CAA 90 bp | GGAGTAAAACACAGTGGAACTTTCTATAATGTGCACCAGATGTTCACGTTTCCTTCTAATACATTTTGTTaGGTAGCTGGTCTTTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: GVKHSGTFYNVHQMFTFPSNTFC*VAGLLA Trigger: AGCCAAAAGACCAGCTACCAAACAAAATGTATTAGA...AGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCACTGTGTTTTACTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| CDS-3UTR CCA 90 bp | GCTGCTGTGGACAAGTCTGAAGCAGCCCCAGATTCCACACCTACAGTATTTCTGTGTCTCTGCCACAACTaGCTCCTTCTCCTTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: AAVDKSEAAPDSTPTVFLCLCHN*LLLLPG Trigger: TCCAGGAAGGAGAAGGAGCCAGTTGTGGCAGAGACA...CAGAAATACTGTAGGTGTGGAATCTGGGGCTGCTTCAGACTTGTCCACAGCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| CDS-3UTR GCA 90 bp | GAAACCATCTGCAGCTGGAAGAATCAAGCCCCTGCTAGAGCACAAGGCAAATTATTCTTCCACTGTCTCTaGCACAACTGGCTCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ETICSWKNQAPARAQGKLFFHCL*HNWLLL Trigger: GAGAAGGAGCCAGTTGTGGCAGAGACAGTGGAAGAA...TAATTTGCCTTGTGCTCTAGCAGGGGCTTGATTCTTCCAGCTGCAGATGGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CAA 72 bp | ATATTAGAACCAGCTTCTTCAGGCGGCCAGCATGAATaGAAGGTCAGTAGGCTTTTCAAAGAATCCCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ILEPASSGGQHE*KVSRLFKESPR Trigger: CCTGGGGGATTCTTTGAAAAGCCTACTGACCTTCAATTCATGCTGGCCGCCTGAAGAAGCTGGTTCTAATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CAA 72 bp | CAGACATCTAATACATTTTGTTTGGTAGCTGGTCTTTaGGCTACTTTGTGGGTTCTTTTTCTTCCGCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QTSNTFCLVAGL*ATLWVLFLPPF Trigger: GAAGGGCGGAAGAAAAAGAACCCACAAAGTAGCCAAAAGACCAGCTACCAAACAAAATGTATTAGATGTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| CDS-3UTR GCA 90 bp | GTTGCCCTTTCTTCCACCTTTACTTATGGAGTAAAACACAGTGGAACTTTCTATAAATTCTCTACGTGTTaGCAAGGGAAGCTTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: VALSSTFTYGVKHSGTFYKFSTC*QGKLPQ Trigger: CTGTGGAAGCTTCCCTTGGCAACACGTAGAGAATTT...ATAGAAAGTTCCACTGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAGGGCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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| 3UTR CAA 72 bp | TGTTCACGTTTCCTTCAGACATCTAATACATTTTGTTaGGTAGCTGGTCTTTTGGCTACTTTGTGGGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: CSRFLQTSNTFC*VAGLLATLWVL Trigger: AAGAACCCACAAAGTAGCCAAAAGACCAGCTACCAAACAAAATGTATTAGATGTCTGAAGGAAACGTGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057829.4 |
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