Pregenerated sensors for MRPL48 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030706Ensembl transcript IDs: ENSMUST00000064334.3, ENSMUST00000107053.11, ENSMUST00000146003.9, ENSMUST00000150042.8
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGGCCTGGTGCCTACCAAGGCCAGAAGAGAGCATCAGATCCCCTaGAACTGGCGTTGCTTTTGTTTGAGGCACAATGTGGGTGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: VGLVPTKARREHQIP*NWRCFCLRHNVGAG Trigger: CCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCTCTTCTGGCCTTGGTAGGCACCAGGCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR CCA 90 bp | AGAGAGCATGCTTTGCCCAAGGTCACAGGACATCTCTTGGCAGAGTaGCAGCAGGATTCGGTCCTGTTTCCCAGTCTGAGGCTTCCTTCC | + |
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Preference number: 1 (lower is better) Translates to: REHALPKVTGHLLAE*QQDSVLFPSLRLPS Trigger: GGAAGGAAGCCTCAGACTGGGAAACAGGACCGAATCCTGCTGCCACTCTGCCAAGAGATGTCCTGTGACCTTGGGCAAAGCATGCTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | CCAGAAGAGAGCATCAGATCCCCTGGAACTGGCGTTGCTTTTGTTTaGGGCACAATGTGGGTGCAGGGAACTAAAGCCAGGTCCTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: PEESIRSPGTGVAFV*GTMWVQGTKARSSA Trigger: TGCAGAGGACCTGGCTTTAGTTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCTCTTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | TCTTCCCTCCTGCCCACCCGCAGTGAAGTGGCCAGACTGCATCCTTaGGCTGCTGACTTTAGAAACCCAAAGAGAACTGGAGTGAATCCA | + |
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Preference number: 1 (lower is better) Translates to: SSLLPTRSEVARLHP*AADFRNPKRTGVNP Trigger: TGGATTCACTCCAGTTCTCTTTGGGTTTCTAAAGTCAGCAGCTCAAGGATGCAGTCTGGCCACTTCACTGCGGGTGGGCAGGAGGGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 90 bp | AATTGTATACATCTCCTCTGCAGAGAAAGCCAGGGCTCCCTCCTCTaGTCCAGCCAGGCATTAAGGCTGCAGGGAAGTAGGGAACCATCT | + |
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Preference number: 1 (lower is better) Translates to: NCIHLLCRESQGSLL*SSQALRLQGSREPS Trigger: AGATGGTTCCCTACTTCCCTGCAGCCTTAATGCCTGGCTGGAGCAGAGGAGGGAGCCCTGGCTTTCTCTGCAGAGGAGATGTATACAATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 90 bp | CCCTCTTCAAGAGGCTTAGGGAAGACTCATGTGTTAGTTCCTCCCTaGAAGGTCCTTGCCTGGGGACTTGGCCTTGTGCTTGGTATAAAG | + |
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Preference number: 1 (lower is better) Translates to: PSSRGLGKTHVLVPP*KVLAWGLGLVLGIK Trigger: CTTTATACCAAGCACAAGGCCAAGTCCCCAGGCAAGGACCTTGCAGGGAGGAACTAACACATGAGTCTTCCCTAAGCCTCTTGAAGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CCA 90 bp | GGGCAGTGTCACATGCGCTCCATTTCAGAACCTGGCAGAGTCTTCTaGTTACCCAGACTTGCTATTTACCAGTATGTGGGAGCAGGACTT | + |
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Preference number: 1 (lower is better) Translates to: GQCHMRSISEPGRVF*LPRLAIYQYVGAGL Trigger: AAGTCCTGCTCCCACATACTGGTAAATAGCAAGTCTGGGTAACCAGAAGACTCTGCCAGGTTCTGAAATGGAGCGCATGTGACACTGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CCA 90 bp | CCTTGTGCAAGGTACACAGTAGCTCTTATTCCCTTACCAGTCTCTTaGGGCAAGTATGTGTCTGCAAACACAGAAGCATTTTGCCAGTCC | + |
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Preference number: 1 (lower is better) Translates to: PCARYTVALIPLPVS*GKYVSANTEAFCQS Trigger: GGACTGGCAAAATGCTTCTGTGTTTGCAGACACATACTTGCCCCAAGAGACTGGTAAGGGAATAAGAGCTACTGTGTACCTTGCACAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | GCTGCTGACTTTAGAAACCCAAAGAGAACTGGAGTGAATCCAAACTaGAATTGTATACATCTCCTCTGCAGAGAAAGCCAGGGCTCCCTC | + |
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Preference number: 1 (lower is better) Translates to: AADFRNPKRTGVNPN*NCIHLLCRESQGSL Trigger: GAGGGAGCCCTGGCTTTCTCTGCAGAGGAGATGTATACAATTTCAGTTTGGATTCACTCCAGTTCTCTTTGGGTTTCTAAAGTCAGCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | GTCACATATAATGAAACCCAATGGAGCACACATCTAGCTCCAGCTTaGAACATCTGCCCCTTCCTCCTTAGGACAACCTTTATAAGGGGA | + |
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Preference number: 1 (lower is better) Translates to: VTYNETQWSTHLAPA*NICPFLLRTTFIRG Trigger: TCCCCTTATAAAGGTTGTCCTAAGGAGGAAGGGGCAGATGTTTCAAGCTGGAGCTAGATGTGTGCTCCATTGGGTTTCATTATATGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | TACCTGTGGATGACCCTGAACTCTAATCCTCCACCTCCTAAGTGCTaGACGTACAGGTATGTACTATTACAATTGGTCAAACCCTTTTTC | + |
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Preference number: 1 (lower is better) Translates to: YLWMTLNSNPPPPKC*TYRYVLLQLVKPFF Trigger: GAAAAAGGGTTTGACCAATTGTAATAGTACATACCTGTACGTTCAGCACTTAGGAGGTGGAGGATTAGAGTTCAGGGTCATCCACAGGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 90 bp | CAACTGAATTCAAGTACCATGCTCAGCAGGTCAGGATTTCCCATGTaGACTCTTTTAGGCAGAATTTCTCAAGTGCAGAGTGATGTTCTG | + |
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Preference number: 1 (lower is better) Translates to: QLNSSTMLSRSGFPM*TLLGRISQVQSDVL Trigger: CAGAACATCACTCTGCACTTGAGAAATTCTGCCTAAAAGAGTTCACATGGGAAATCCTGACCTGCTGAGCATGGTACTTGAATTCAGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CCA 90 bp | CCTCCTCTTAGAATCAAAAGGCTTCTGTTACTCTGCTCTGAGAAATaGAAATGGCTCTTAACATTTGTTTACCTGGTAAGAGGGGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: PPLRIKRLLLLCSEK*KWLLTFVYLVRGVG Trigger: TCCCACCCCTCTTACCAGGTAAACAAATGTTAAGAGCCATTTCCATTTCTCAGAGCAGAGTAACAGAAGCCTTTTGATTCTAAGAGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CCA 90 bp | CTGGTTACCCAGACTTGCTATTTACCAGTATGTGGGAGCAGGACTTaGGATTTTATTGACAACACACTGCAGCTGAAATACTTAGGAACT | + |
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Preference number: 1 (lower is better) Translates to: LVTQTCYLPVCGSRT*DFIDNTLQLKYLGT Trigger: AGTTCCTAAGTATTTCAGCTGCAGTGTGTTGTCAATAAAATCCCAAGTCCTGCTCCCACATACTGGTAAATAGCAAGTCTGGGTAACCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 90 bp | TCCACATCTTTGAATCTTATCATTTCTCAGATGTTGCTGCTGGGTTaGTTCTCTGAGAATATAATCCAGGTGACTCTGGTGTGCTTGCTT | + |
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Preference number: 1 (lower is better) Translates to: STSLNLIISQMLLLG*FSENIIQVTLVCLL Trigger: AAGCAAGCACACCAGAGTCACCTGGATTATATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAATGATAAGATTCAAAGATGTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 90 bp | TTCATGATGTATCCTCCTCTTAGAATCAAAAGGCTTCTGTTACTCTaGTCTGAGAAATGGAAATGGCTCTTAACATTTGTTTACCTGGTA | + |
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Preference number: 1 (lower is better) Translates to: FMMYPPLRIKRLLLL*SEKWKWLLTFVYLV Trigger: TACCAGGTAAACAAATGTTAAGAGCCATTTCCATTTCTCAGAGCAGAGTAACAGAAGCCTTTTGATTCTAAGAGGAGGATACATCATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 90 bp | CAGAGTTTGCTTTTGTTGCAATCTCTACTTAATCATAAACCTCCATaGTGTAGTATTACTTTAAGAGATGAGTTCATATTGGGCACAATG | + |
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Preference number: 1 (lower is better) Translates to: QSLLLLQSLLNHKPP*CSITLRDEFILGTM Trigger: CATTGTGCCCAATATGAACTCATCTCTTAAAGTAATACTACAGCATGGAGGTTTATGATTAAGTAGAGATTGCAACAAAAGCAAACTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR GCA 90 bp | TTAACCCTGATCTTGCAGGAGCAGCTTCTCGGAGACCAACAATCACATGAAGGGAGCCCGGGGCACAGATaGAAGGAGGCATTCCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: LTLILQEQLLGDQQSHEGSPGHR*KEAFPA Trigger: TGCTGGGAATGCCTCCTTGCATCTGTGCCCCGGGCT...CCCTTCATGTGATTGTTGGTCTCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGCCGGGTGGCCCTCTTCAAGAGGCTTAGGGAAGACTCATGTGTTAGTTCCTACGGGCAGTGTCACATaGGCTCCATTTCAGAACCTG | + |
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Preference number: 2 (lower is better) Translates to: LAGWPSSRGLGKTHVLVPTGSVT*APFQNL Trigger: CAGGTTCTGAAATGGAGCGCATGTGACACTGCCCGT...AGGAACTAACACATGAGTCTTCCCTAAGCCTCTTGAAGAGGGCCACCCGGCTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CAA 90 bp | CACAATGGCATACAACCTTTAACCCCAGCATTTGGAGGGTGGAAATaGGGGGAAAGGAGGCAGGTGGATCTCTGTGAGTTTGAGACTACC | + |
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Preference number: 2 (lower is better) Translates to: HNGIQPLTPAFGGWK*GERRQVDLCEFETT Trigger: GGTAGTCTCAAACTCACAGAGATCCACCTGCCTCCTTTCCCCCAATTTCCACCCTCCAAATGCTGGGGTTAAAGGTTGTATGCCATTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGGTGGATCTCTGTGAGTTTGAGACTACCCCCATCTATATAGTAAGTTCCATGGGAAGTGGTAACTaGCAAGCCCGGGGCACAGAT | + |
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Preference number: 2 (lower is better) Translates to: RQVDLCEFETTPIYIVSSMGSGN*QARGTD Trigger: ATCTGTGCCCCGGGCTTGCCAGTTACCACTTCCCAT...GGAACTTACTATATAGATGGGGGTAGTCTCAAACTCACAGAGATCCACCTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| 3UTR CAA 90 bp | ACCAGTCTCTTGGGGCAAGTATGTGTCTGCAAACACAGAAGCATTTaGCCAGTCCAGGCCAGCCAAGGCTACATGTTAAGACTCTTACCT | + |
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Preference number: 2 (lower is better) Translates to: TSLLGQVCVCKHRSI*PVQASQGYMLRLLP Trigger: AGGTAAGAGTCTTAACATGTAGCCTTGGCTGGCCTGGACTGGCAAAATGCTTCTGTGTTTGCAGACACATACTTGCCCCAAGAGACTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCAGGTGGATCTCTGTGAGTTTGAGACTACCCCCATCTATATAGTAAGTTCCGGCGTTGCTTTTGTTTaGGGCACAATGTGGGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: RQVDLCEFETTPIYIVSSGVAFV*GTMWVQ Trigger: CTGCACCCACATTGTGCCTCAAACAAAAGCAACGCC...GGAACTTACTATATAGATGGGGGTAGTCTCAAACTCACAGAGATCCACCTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR TCA 90 bp | GAATGTCCCAGAAGTGAGCAAAAAGGTCTGAGAATGAGTTATTACAGGGAGGTGTTCTGCAGCGAGGGCTaGGGAGAAACAGACTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: ECPRSEQKGLRMSYYREVFCSEG*GETDSL Trigger: AAGAGAGTCTGTTTCTCCTCAGCCCTCGCTGCAGAA...CACCTCCCTGTAATAACTCATTCTCAGACCTTTTTGCTCACTTCTGGGACATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR TCA 90 bp | GCCAGCCAAGGCTACATGTTAAGACTCTTACCTCGAAACAGAACAAAACCAAAATCCTGTTTCCCAGTCTaGGGCTTCCTTCCCATCACG | + |
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Preference number: 2 (lower is better) Translates to: ASQGYMLRLLPRNRTKPKSCFPV*GFLPIT Trigger: CGTGATGGGAAGGAAGCCTCAGACTGGGAAACAGGA...TTTTGGTTTTGTTCTGTTTCGAGGTAAGAGTCTTAACATGTAGCCTTGGCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGCCGGGTGGCCCTCTTCAAGAGGCTTAGGGAAGACTCATGTGTTAGTTCCTAGGCTTCTGTTACTCTaGTCTGAGAAATGGAAATGG | + |
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Preference number: 2 (lower is better) Translates to: LAGWPSSRGLGKTHVLVPRLLLL*SEKWKW Trigger: CCATTTCCATTTCTCAGAGCAGAGTAACAGAAGCCT...AGGAACTAACACATGAGTCTTCCCTAAGCCTCTTGAAGAGGGCCACCCGGCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR TCA 90 bp | TTAGCCGGGTGGCCCTCTTCAAGAGGCTTAGGGAAGACTCATGTGTTAGTTCCTAAGGAGACCAGACTGTaGACAGATCTACTTAATTAT | + |
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Preference number: 2 (lower is better) Translates to: LAGWPSSRGLGKTHVLVPKETRL*TDLLNY Trigger: ATAATTAAGTAGATCTGTTCACAGTCTGGTCTCCTT...AGGAACTAACACATGAGTCTTCCCTAAGCCTCTTGAAGAGGGCCACCCGGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | TACTTTTGCTTTCTTCTTTTTGGGCTCCTGCACTTTCACCAAGTGTCTGTATCTTGTGAGGGTGGTTCTTaGTGCTTCCCAGTTTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: YFCFLLFGLLHFHQVSVSCEGGS*CFPVSP Trigger: AGGGGAAACTGGGAAGCACCAAGAACCACCCTCACA...AGATACAGACACTTGGTGAAAGTGCAGGAGCCCAAAAAGAAGAAAGCAAAAGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
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| 3UTR-3UTR TCA 90 bp | TCTAGCTCATGCCAATACATACTGGAACATCACTCCTTCCCTAAATCCACTAGTTGGTGTGCTTGCTTCTaGGCATCTGTGTCTTCATGT | + |
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Preference number: 2 (lower is better) Translates to: SSSCQYILEHHSFPKSTSWCACF*ASVSSC Trigger: ACATGAAGACACAGATGCTCAGAAGCAAGCACACCA...ACTAGTGGATTTAGGGAAGGAGTGATGTTCCAGTATGTATTGGCATGAGCTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCAGCCAGGTGATATAGGCATCTGGATTAAAAACAGCACAGAGAAATGTAAGAACTTGCAATCCTCCTaGTTCAAGCTCCTGGATGCT | + |
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Preference number: 2 (lower is better) Translates to: QQPGDIGIWIKNSTEKCKNLQSS*FKLLDA Trigger: AGCATCCAGGAGCTTGAAGCAGGAGGATTGCAAGTT...CTTACATTTCTCTGTGCTGTTTTTAATCCAGATGCCTATATCACCTGGCTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | GAATGTCCCAGAAGTGAGCAAAAAGGTCTGAGAATGAGTTATTACAGGGAGGTGCTCAGATGTTGCTGCTaGGTTGCTTCTCTGAGAATA | + |
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Preference number: 2 (lower is better) Translates to: ECPRSEQKGLRMSYYREVLRCCC*VASLRI Trigger: TATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAG...CACCTCCCTGTAATAACTCATTCTCAGACCTTTTTGCTCACTTCTGGGACATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR TCA 90 bp | ACATACTGGAACATCACTCCTTCCCTAAATCCACTAGTCCTAGAAATGGAAGACTGTATGTATGTCATGTaGCCCAAGTTGTCCTGGAAC | + |
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Preference number: 2 (lower is better) Translates to: TYWNITPSLNPLVLEMEDCMYVM*PKLSWN Trigger: GTTCCAGGACAACTTGGGTCACATGACATACATACA...GTCTTCCATTTCTAGGACTAGTGGATTTAGGGAAGGAGTGATGTTCCAGTATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR GCA 90 bp | TCTAGCTCATGCCAATACATACTGGAACATCACTCCTTCCCTAAATCCACTAGTTTTCTCAGATGTTGCTaGTGGGTTGCTTCTCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: SSSCQYILEHHSFPKSTSFLRCC*WVASLR Trigger: TCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAA...ACTAGTGGATTTAGGGAAGGAGTGATGTTCCAGTATGTATTGGCATGAGCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | ATTGGGCACAATGGCATACAACCTTTAACCCCAGCATTTGGAGGGTGGAAATTGCAAACACACACACACTaGCAACAGCAGACATTTATT | + |
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Preference number: 2 (lower is better) Translates to: IGHNGIQPLTPAFGGWKLQTHTH*QQQTFI Trigger: AATAAATGTCTGCTGTTGCCAGTGTGTGTGTGTTTG...CAATTTCCACCCTCCAAATGCTGGGGTTAAAGGTTGTATGCCATTGTGCCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | TCCATGTCAGTCCATAAAGTCAAACAGGCTCCTCTTTCCACTGTACTAAATCACCCCAAAAGGCCAAAGTaGTTCACTCCTTTTCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: SMSVHKVKQAPLSTVLNHPKRPK*FTPFLC Trigger: ACAGAGAAAAGGAGTGAACCACTTTGGCCTTTTGGG...GTGATTTAGTACAGTGGAAAGAGGAGCCTGTTTGACTTTATGGACTGACATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGTAGTATTACTTTAAGAGATGAGTTCATATTGGGCACAATGGCATACAACCAGATCCCCTGGAACTaGCGTTGCTTTTGTTTGAGG | + |
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Preference number: 2 (lower is better) Translates to: CCSITLRDEFILGTMAYNQIPWN*RCFCLR Trigger: CCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTG...GTTGTATGCCATTGTGCCCAATATGAACTCATCTCTTAAAGTAATACTACAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCAGCCAGGTGATATAGGCATCTGGATTAAAAACAGCACAGAGAAATGTAAGGAGATGAGTTCATATTaGGCACAATGGCATACAACC | + |
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Preference number: 2 (lower is better) Translates to: QQPGDIGIWIKNSTEKCKEMSSY*AQWHTT Trigger: GGTTGTATGCCATTGTGCCCAATATGAACTCATCTC...CTTACATTTCTCTGTGCTGTTTTTAATCCAGATGCCTATATCACCTGGCTGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CAA 90 bp | AATATTTATTTTATATGCATAAGAGTTTTGCCTGCATGTATGTGTTaGTGTGGGCCTGGTGCCTACCAAGGCCAGAAGAGAGCATCAGAT | + |
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Preference number: 2 (lower is better) Translates to: NIYFICIRVLPACMC*CGPGAYQGQKRASD Trigger: ATCTGATGCTCTCTTCTGGCCTTGGTAGGCACCAGGCCCACACAAACACATACATGCAGGCAAAACTCTTATGCATATAAAATAAATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR CAA 90 bp | ACCGTTTCAGAATCCACATCTTTGAATCTTATCATTTCTCAGATGTaGCTGCTGGGTTGCTTCTCTGAGAATATAATCCAGGTGACTCTG | + |
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Preference number: 2 (lower is better) Translates to: TVSESTSLNLIISQM*LLGCFSENIIQVTL Trigger: CAGAGTCACCTGGATTATATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAATGATAAGATTCAAAGATGTGGATTCTGAAACGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 72 bp | CATCTCCTCTGCAGAGAAAGCCAGGGCTCCCTCCTCTaGTCCAGCCAGGCATTAAGGCTGCAGGGAAGTAGG | + |
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Preference number: 3 (lower is better) Translates to: HLLCRESQGSLL*SSQALRLQGSR Trigger: CCTACTTCCCTGCAGCCTTAATGCCTGGCTGGAGCAGAGGAGGGAGCCCTGGCTTTCTCTGCAGAGGAGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR CCA 72 bp | GCTTTGCCCAAGGTCACAGGACATCTCTTGGCAGAGTaGCAGCAGGATTCGGTCCTGTTTCCCAGTCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: ALPKVTGHLLAE*QQDSVLFPSLR Trigger: CCTCAGACTGGGAAACAGGACCGAATCCTGCTGCCACTCTGCCAAGAGATGTCCTGTGACCTTGGGCAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR GCA 72 bp | CTTCCCTCCTGCCCACCCGCAGTGAAGTGGCCAGACTaGATCCTTGAGCTGCTGACTTTAGAAACCCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: LPSCPPAVKWPD*ILELLTLETQR Trigger: TCTTTGGGTTTCTAAAGTCAGCAGCTCAAGGATGCAGTCTGGCCACTTCACTGCGGGTGGGCAGGAGGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 72 bp | CTGCCCACCCGCAGTGAAGTGGCCAGACTGCATCCTTaGGCTGCTGACTTTAGAAACCCAAAGAGAACTGGA | + |
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Preference number: 3 (lower is better) Translates to: LPTRSEVARLHP*AADFRNPKRTG Trigger: TCCAGTTCTCTTTGGGTTTCTAAAGTCAGCAGCTCAAGGATGCAGTCTGGCCACTTCACTGCGGGTGGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| 3UTR TCA 72 bp | AGCATCAGATCCCCTGGAACTGGCGTTGCTTTTGTTTaGGGCACAATGTGGGTGCAGGGAACTAAAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: SIRSPGTGVAFV*GTMWVQGTKAR Trigger: CCTGGCTTTAGTTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR CCA 72 bp | ACCAAGGCCAGAAGAGAGCATCAGATCCCCTGGAACTaGCGTTGCTTTTGTTTGAGGCACAATGTGGGTGCA | + |
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Preference number: 3 (lower is better) Translates to: TKARREHQIPWN*RCFCLRHNVGA Trigger: TGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCTCTTCTGGCCTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR CCA 72 bp | GTGCCTACCAAGGCCAGAAGAGAGCATCAGATCCCCTaGAACTGGCGTTGCTTTTGTTTGAGGCACAATGTG | + |
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Preference number: 3 (lower is better) Translates to: VPTKARREHQIP*NWRCFCLRHNV Trigger: CACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCTCTTCTGGCCTTGGTAGGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
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| 3UTR TCA 72 bp | AGCAAGCCAAAGCCAAAGCCAGACAGATCATATGTGTaGGGGTGGTTCTTGGTGCTTCCCAGTTTCCCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: SKPKPKPDRSYV*GWFLVLPSFPF Trigger: GAAGGGGAAACTGGGAAGCACCAAGAACCACCCTCACACATATGATCTGTCTGGCTTTGGCTTTGGCTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
||
| 3UTR GCA 72 bp | ACACACACACACATATATGCACTGCTCTGCTCCCAATaGACACGGGCAGTGTCACATGCGCTCCATTTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: THTHIYALLCSQ*TRAVSHALHFR Trigger: TCTGAAATGGAGCGCATGTGACACTGCCCGTGTGCATTGGGAGCAGAGCAGTGCATATATGTGTGTGTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR GCA 72 bp | GAACTGGCGTTGCTTTTGTTTGAGGCACAATGTGGGTaGAGGGAACTAAAGCCAGGTCCTCTGCAAAAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: ELALLLFEAQCG*RELKPGPLQKQ Trigger: TTGCTTTTGCAGAGGACCTGGCTTTAGTTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
||
| 3UTR GCA 72 bp | ACTAGTCCTAGAAATGGAAGACCAGAGGCTCAGTACTaGTGCAGTTCCCAAAAGGCCAAAGTGGTTCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: TSPRNGRPEAQY*CSSQKAKVVHS Trigger: GGAGTGAACCACTTTGGCCTTTTGGGAACTGCAGCAGTACTGAGCCTCTGGTCTTCCATTTCTAGGACTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | ACAGTCACAAGCTTCACTGGGTTCTGCAGCGAGGGCTaGGGAGAAACAGACTCTCTTAGGGTCACATATAAT | + |
|
Preference number: 3 (lower is better) Translates to: TVTSFTGFCSEG*GETDSLRVTYN Trigger: ATTATATGTGACCCTAAGAGAGTCTGTTTCTCCTCAGCCCTCGCTGCAGAACCCAGTGAAGCTTGTGACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CCA 72 bp | CAAAGCCAGACAGATCATATGTGTGAGGGTGGTTCTTaGTGCTTCCCAGTTTCCCCTTCTGTTCTCTCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: QSQTDHMCEGGS*CFPVSPSVLSF Trigger: AAAGGAGAGAACAGAAGGGGAAACTGGGAAGCACCAAGAACCACCCTCACACATATGATCTGTCTGGCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
||
| 3UTR CCA 72 bp | GTGGTAAGGATGGAGTCTAGGACCATTTTGTTGCCTTaGTCTGGCAGTCGCATCACTTCCATGGTTTTGGTA | + |
|
Preference number: 3 (lower is better) Translates to: VVRMESRTILLP*SGSRITSMVLV Trigger: TACCAAAACCATGGAAGTGATGCGACTGCCAGACCAAGGCAACAAAATGGTCCTAGACTCCATCCTTACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
||
| 3UTR CCA 72 bp | CTTTTCACGGCCGTTAGTCTAATTGTCTCATTGGGATaGGTTGTCAAGGCTAGCCTGCTGGAGTTGTTAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LFTAVSLIVSLG*VVKASLLELLE Trigger: CTCTAACAACTCCAGCAGGCTAGCCTTGACAACCCATCCCAATGAGACAATTAGACTAACGGCCGTGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR-3UTR CAA 90 bp | TTAACCCTGATCTTGCAGGAGCAGCTTCTCGGAGACCAACAATCACATGAAGGGTTTGCTTTCTTCTTTTaGGGCTCCTGCACTTTCACC | + |
|
Preference number: 3 (lower is better) Translates to: LTLILQEQLLGDQQSHEGFAFFF*GSCTFT Trigger: GGTGAAAGTGCAGGAGCCCAAAAAGAAGAAAGCAAA...CCCTTCATGTGATTGTTGGTCTCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
||
| 3UTR-3UTR CAA 90 bp | TTATTCCCTTACCAGTCTCTTGGGGCAAGTATGTGTCTGCAAACACAGAAGCATTCCTTAACCCTGATCTaGCAGGAGCAGCTTCTCGGA | + |
|
Preference number: 3 (lower is better) Translates to: LFPYQSLGASMCLQTQKHSLTLI*QEQLLG Trigger: TCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAAGGA...ATGCTTCTGTGTTTGCAGACACATACTTGCCCCAAGAGACTGGTAAGGGAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | AATGAAACCCAATGGAGCACACATCTAGCTCCAGCTTaGAACATCTGCCCCTTCCTCCTTAGGACAACCTTT | + |
|
Preference number: 3 (lower is better) Translates to: NETQWSTHLAPA*NICPFLLRTTF Trigger: AAAGGTTGTCCTAAGGAGGAAGGGGCAGATGTTTCAAGCTGGAGCTAGATGTGTGCTCCATTGGGTTTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR GCA 72 bp | CCACTTCTGCCTACAGCATCTATCAGGTCTAGCTCATaGCAATACATACTGGAACATCACTCCTTCCCTAAA | + |
|
Preference number: 3 (lower is better) Translates to: PLLPTASIRSSS*QYILEHHSFPK Trigger: TTTAGGGAAGGAGTGATGTTCCAGTATGTATTGGCATGAGCTAGACCTGATAGATGCTGTAGGCAGAAGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | TGCAATCCTCCTGCTTCAAGCTCCTGGATGCTGGGGTaGTACATGCAATCACATTTAGCAAGCATCTTTTAT | + |
|
Preference number: 3 (lower is better) Translates to: CNPPASSSWMLG*YMQSHLASIFY Trigger: ATAAAAGATGCTTGCTAAATGTGATTGCATGTATCACCCCAGCATCCAGGAGCTTGAAGCAGGAGGATTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | TCAAGTACCATGCTCAGCAGGTCAGGATTTCCCATGTaGACTCTTTTAGGCAGAATTTCTCAAGTGCAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: SSTMLSRSGFPM*TLLGRISQVQS Trigger: ACTCTGCACTTGAGAAATTCTGCCTAAAAGAGTTCACATGGGAAATCCTGACCTGCTGAGCATGGTACTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | TATCATTTCTCAGATGTTGCTGCTGGGTTGCTTCTCTaGGAATATAATCCAGGTGACTCTGGTGTGCTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: YHFSDVAAGLLL*EYNPGDSGVLA Trigger: AGCAAGCACACCAGAGTCACCTGGATTATATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAATGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CCA 72 bp | CAGCATCTATCAGGTCTAGCTCATGCCAATACATACTaGAACATCACTCCTTCCCTAAATCCACTAGTCCTA | + |
|
Preference number: 3 (lower is better) Translates to: QHLSGLAHANTY*NITPSLNPLVL Trigger: TAGGACTAGTGGATTTAGGGAAGGAGTGATGTTCCAGTATGTATTGGCATGAGCTAGACCTGATAGATGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CCA 72 bp | CAGACTTGCTATTTACCAGTATGTGGGAGCAGGACTTaGGATTTTATTGACAACACACTGCAGCTGAAATAC | + |
|
Preference number: 3 (lower is better) Translates to: QTCYLPVCGSRT*DFIDNTLQLKY Trigger: GTATTTCAGCTGCAGTGTGTTGTCAATAAAATCCCAAGTCCTGCTCCCACATACTGGTAAATAGCAAGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR-3UTR CAA 90 bp | GAATGTCCCAGAAGTGAGCAAAAAGGTCTGAGAATGAGTTATTACAGGGAGGTGGTAACTTCACACAACTaGTTTTCTGGTCTGTATGGT | + |
|
Preference number: 3 (lower is better) Translates to: ECPRSEQKGLRMSYYREVVTSHN*FSGLYG Trigger: ACCATACAGACCAGAAAACAAGTTGTGTGAAGTTAC...CACCTCCCTGTAATAACTCATTCTCAGACCTTTTTGCTCACTTCTGGGACATTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | AATCTGGGTACTATCTGCAAAGGAATGTCCCAGAAGTaGGCAAAAAGGTCTGAGAATGAGTTATTACAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: NLGTICKGMSQK*AKRSENELLQG Trigger: TCCCTGTAATAACTCATTCTCAGACCTTTTTGCTCACTTCTGGGACATTCCTTTGCAGATAGTACCCAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR GCA 72 bp | TTGAATCTTATCATTTCTCAGATGTTGCTGCTGGGTTaGTTCTCTGAGAATATAATCCAGGTGACTCTGGTG | + |
|
Preference number: 3 (lower is better) Translates to: LNLIISQMLLLG*FSENIIQVTLV Trigger: CACCAGAGTCACCTGGATTATATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAATGATAAGATTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR TCA 72 bp | ATGCATGTATGTATATATGTATGTATGTATGTCATGTaGCCCAAGTTGTCCTGGAACTCACTCTGTACCTGT | + |
|
Preference number: 3 (lower is better) Translates to: MHVCIYVCMYVM*PKLSWNSLCTC Trigger: ACAGGTACAGAGTGAGTTCCAGGACAACTTGGGTCACATGACATACATACATACATATATACATACATGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | GCACGAGCATTCACGCTCCTCCTTAACCCTGATCTTGCAGGAGCAGCTTCTCGGCTCAGACCGCTGATCTaGACCACTCGCTCATGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ARAFTLLLNPDLAGAASRLRPLI*TTRSWV Trigger: CACCCATGAGCGAGTGGTGCAGATCAGCGGTCTGAG...CCGAGAAGCTGCTCCTGCAAGATCAGGGTTAAGGAGGAGCGTGAATGCTCGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | TGGGTGCAGGGAACTAAAGCCAGGTCCTCTGCAAAAGCAACAAGCGCCTTTAACGGTCCTCTTCCCTCCTaGCCACCCGCAGTGAAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: WVQGTKARSSAKATSAFNGPLPS*PPAVKW Trigger: CCACTTCACTGCGGGTGGGCAGGAGGGAAGAGGACC...GTTAAAGGCGCTTGTTGCTTTTGCAGAGGACCTGGCTTTAGTTCCCTGCACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| CDS-3UTR CCA 90 bp | GCACGAGCATTCACGCTCCTCCTTAACCCTGATCTTGCAGGAGCAGCTTCTCGGTTCCGATGCCACGAGTaGGCTTTGTCTTGTAGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: ARAFTLLLNPDLAGAASRFRCHE*ALSCSA Trigger: GGCACTACAAGACAAAGCCCACTCGTGGCATCGGAA...CCGAGAAGCTGCTCCTGCAAGATCAGGGTTAAGGAGGAGCGTGAATGCTCGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | GGCCAGAAGAGAGCATCAGATCCCCTGGAACTGGCGTaGCTTTTGTTTGAGGCACAATGTGGGTGCAGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GQKRASDPLELA*LLFEAQCGCRE Trigger: TTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCTCTTCTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | CAGCACGAGCATTCACGCTCCTCCTTAACCCTGATCTaGCAGGAGCAGCTTCTCGGAGACCAACAATCACAT | + |
|
Preference number: 4 (lower is better) Translates to: QHEHSRSSLTLI*QEQLLGDQQSH Trigger: ATGTGATTGTTGGTCTCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAAGGAGGAGCGTGAATGCTCGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| CDS-3UTR TCA 90 bp | AATTGGGGGAAAGGAGGCAGGTGGATCTCTGTGAGTTTGAGACTACCCCCATCTCCCTCACGGACAATCTaGCTCCTTCTGGAAGATTGC | + |
|
Preference number: 4 (lower is better) Translates to: NWGKGGRWISVSLRLPPSPSRTI*LLLEDC Trigger: GCAATCTTCCAGAAGGAGTCAGATTGTCCGTGAGGG...AGATGGGGGTAGTCTCAAACTCACAGAGATCCACCTGCCTCCTTTCCCCCAATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| CDS-3UTR TCA 90 bp | CTGGGTTCTGCAGCGAGGGCTGAGGAGAAACAGACTCTCTTAGGGTCACATATACCCTCACGGACAATCTaGCTCCTTCTGGAAGATTGC | + |
|
Preference number: 4 (lower is better) Translates to: LGSAARAEEKQTLLGSHIPSRTI*LLLEDC Trigger: GCAATCTTCCAGAAGGAGTCAGATTGTCCGTGAGGG...TATATGTGACCCTAAGAGAGTCTGTTTCTCCTCAGCCCTCGCTGCAGAACCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR CCA 90 bp | CATTCACGCTCCTCCTTAACCCTGATCTTGCAGGAGCAGCTTCTCGGAGACCAAACCATTTTGTTGCCTTaGTCTGGCAGTCGCATCACT | + |
|
Preference number: 4 (lower is better) Translates to: HSRSSLTLILQEQLLGDQTILLP*SGSRIT Trigger: AGTGATGCGACTGCCAGACCAAGGCAACAAAATGGT...TTGGTCTCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAAGGAGGAGCGTGAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | CATGTATGTGTTTGTGTGGGCCTGGTGCCTACCAAGGCCAGAAGAGAGCATCAGTTCTTTTTGGGCTCCTaGACTTTCACCAAGTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HVCVCVGLVPTKARREHQFFLGS*TFTKCL Trigger: CAGACACTTGGTGAAAGTGCAGGAGCCCAAAAAGAA...CTGATGCTCTCTTCTGGCCTTGGTAGGCACCAGGCCCACACAAACACATACATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | CTAGGTTTTGTTATGGGAAGTGGTAACTGGCAAGCCCGGGGCACAGATGCAAGGCTCCTTCTGGAAGATTaGTTTGGAGTACTTCCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: LGFVMGSGNWQARGTDARLLLED*FGVLPR Trigger: TCTTGGAAGTACTCCAAAGCAATCTTCCAGAAGGAG...CCTTGCATCTGTGCCCCGGGCTTGCCAGTTACCACTTCCCATAACAAAACCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| CDS-3UTR CCA 90 bp | TTGCTTTTGTTTGAGGCACAATGTGGGTGCAGGGAACTAAAGCCAGGTCCTCTGACCATTTTGTTGCCTTaGTCTGGCAGTCGCATCACT | + |
|
Preference number: 4 (lower is better) Translates to: LLLFEAQCGCRELKPGPLTILLP*SGSRIT Trigger: AGTGATGCGACTGCCAGACCAAGGCAACAAAATGGT...CAGAGGACCTGGCTTTAGTTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR TCA 90 bp | ATTATGCCCCAATGCTTTTATTTAAACCTAAAGTCCATGTCAGTCCATAAAGTCCCTGCCCACCCGCAGTaGAGTGGCCAGACTGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: IMPQCFYLNLKSMSVHKVPAHPQ*SGQTAS Trigger: GGATGCAGTCTGGCCACTTCACTGCGGGTGGGCAGG...GACTTTATGGACTGACATGGACTTTAGGTTTAAATAAAAGCATTGGGGCATAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| CDS-3UTR TCA 90 bp | GCGTTGCTTTTGTTTGAGGCACAATGTGGGTGCAGGGAACTAAAGCCAGGTCCTTTTTCCCTAATACTCTaGTTACAGGACTTCTTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: ALLLFEAQCGCRELKPGPFSLIL*LQDFLA Trigger: GGCTAAGAAGTCCTGTAATCAGAGTATTAGGGAAAA...AGGACCTGGCTTTAGTTCCCTGCACCCACATTGTGCCTCAAACAAAAGCAACGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| CDS-3UTR GCA 90 bp | TCCATGTCAGTCCATAAAGTCAAACAGGCTCCTCTTTCCACTGTACTAAATCACGTGAAGTGGCCAGACTaGATCCTTGAGCTGCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: SMSVHKVKQAPLSTVLNHVKWPD*ILELLT Trigger: AGTCAGCAGCTCAAGGATGCAGTCTGGCCACTTCAC...GTGATTTAGTACAGTGGAAAGAGGAGCCTGTTTGACTTTATGGACTGACATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| CDS-3UTR GCA 90 bp | CAAAGCCAGACAGATCATATGTGTGAGGGTGGTTCTTGGTGCTTCCCAGTTTCCAGGAGGGAAAAGCCTTaGTTAGAAACAGTATTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: QSQTDHMCEGGSWCFPVSRREKP*LETVLV Trigger: GACCAATACTGTTTCTAAGCAAGGCTTTTCCCTCCT...GGAAACTGGGAAGCACCAAGAACCACCCTCACACATATGATCTGTCTGGCTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107053.11 |
||
| CDS-3UTR TCA 90 bp | AGAGCATCAGATCCCCTGGAACTGGCGTTGCTTTTGTTTGAGGCACAATGTGGGCAAAGAGAACTGGAGTaGATCCAAACTGAAATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: RASDPLELALLLFEAQCGQRELE*IQTEIV Trigger: TACAATTTCAGTTTGGATTCACTCCAGTTCTCTTTG...CCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| CDS-3UTR GCA 90 bp | AATTGGGGGAAAGGAGGCAGGTGGATCTCTGTGAGTTTGAGACTACCCCCATCTTCTCAGTTCTACTTTTaGTTTCTTCTTTTTGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NWGKGGRWISVSLRLPPSSQFYF*FLLFGL Trigger: GAGCCCAAAAAGAAGAAAGCAAAAGTAGAACTGAGA...AGATGGGGGTAGTCTCAAACTCACAGAGATCCACCTGCCTCCTTTCCCCCAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR CCA 90 bp | AGAGCATCAGATCCCCTGGAACTGGCGTTGCTTTTGTTTGAGGCACAATGTGGGAAACCCAAAGAGAACTaGAGTGAATCCAAACTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: RASDPLELALLLFEAQCGKPKEN*SESKLK Trigger: TTTCAGTTTGGATTCACTCCAGTTCTCTTTGGGTTT...CCCACATTGTGCCTCAAACAAAAGCAACGCCAGTTCCAGGGGATCTGATGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| 3UTR CAA 72 bp | TTTATATGCATAAGAGTTTTGCCTGCATGTATGTGTTaGTGTGGGCCTGGTGCCTACCAAGGCCAGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: FICIRVLPACMC*CGPGAYQGQKR Trigger: TCTCTTCTGGCCTTGGTAGGCACCAGGCCCACACAAACACATACATGCAGGCAAAACTCTTATGCATATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064334.3 ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | TTGCTGTTAGATTTCCTTCCCCTCAATATTTTAAACTaGCAATCCTCCTGCTTCAAGCTCCTGGATGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLDFLPLNILN*QSSCFKLLDAG Trigger: CCCAGCATCCAGGAGCTTGAAGCAGGAGGATTGCAAGTTTAAAATATTGAGGGGAAGGAAATCTAACAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | AAGGTACACAGTAGCTCTTATTCCCTTACCAGTCTCTaGGGGCAAGTATGTGTCTGCAAACACAGAAGCATT | + |
|
Preference number: 4 (lower is better) Translates to: KVHSSSYSLTSL*GQVCVCKHRSI Trigger: AATGCTTCTGTGTTTGCAGACACATACTTGCCCCAAGAGACTGGTAAGGGAATAAGAGCTACTGTGTACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | TCAGTCCATAAAGTCAAACAGGCTCCTCTTTCCACTGTACTAAATCACCCCTACAGGAGGGAAAAGCCTTaGTTAGAAACAGTATTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: SVHKVKQAPLSTVLNHPYRREKP*LETVLV Trigger: GACCAATACTGTTTCTAAGCAAGGCTTTTCCCTCCT...GTAGGGGTGATTTAGTACAGTGGAAAGAGGAGCCTGTTTGACTTTATGGACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR CCA 90 bp | ACACACACACACAAACACACACACACTGGCAACAGCAGACATTTATTAGGTGGATTGCTTTCTTCTTTTTaGGCTCCTGCACTTTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: THTHKHTHTGNSRHLLGGLLSSF*APALSP Trigger: TGGTGAAAGTGCAGGAGCCCAAAAAGAAGAAAGCAA...TCCACCTAATAAATGTCTGCTGTTGCCAGTGTGTGTGTGTTTGTGTGTGTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | TTGGCAGCTGGTGATTCACTCACAGCTTGCAAGAGCTaGCTGTTAGATTTCCTTCCCCTCAATATTTTAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LAAGDSLTACKS*LLDFLPLNILN Trigger: GTTTAAAATATTGAGGGGAAGGAAATCTAACAGCAAGCTCTTGCAAGCTGTGAGTGAATCACCAGCTGCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR GCA 90 bp | AACAGCAGACATTTATTAGGTGGAGAAGGTCCTAGGTTTTGTTATGGGAAGTGGCTCCTTCTGGAAGATTaGTTTGGAGTACTTCCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: NSRHLLGGEGPRFCYGKWLLLED*FGVLPR Trigger: TCTTGGAAGTACTCCAAAGCAATCTTCCAGAAGGAG...CCACTTCCCATAACAAAACCTAGGACCTTCTCCACCTAATAAATGTCTGCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
||
| 3UTR CAA 72 bp | GTTGTATCCAGCCTTCTACGGAAGAAAACTTGTGAGTaGTTCTCCTTGGTAAGCTACTGTAACTTCACACAA | + |
|
Preference number: 4 (lower is better) Translates to: VVSSLLRKKTCE*FSLVSYCNFTQ Trigger: TTGTGTGAAGTTACAGTAGCTTACCAAGGAGAACAACTCACAAGTTTTCTTCCGTAGAAGGCTGGATACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
||
| CDS-3UTR CCA 90 bp | ATTATGCCCCAATGCTTTTATTTAAACCTAAAGTCCATGTCAGTCCATAAAGTCCCTTGCCTGGGGACTTaGCCTTGTGCTTGGTATAAA | + |
|
Preference number: 4 (lower is better) Translates to: IMPQCFYLNLKSMSVHKVPCLGT*PCAWYK Trigger: TTTATACCAAGCACAAGGCCAAGTCCCCAGGCAAGG...GACTTTATGGACTGACATGGACTTTAGGTTTAAATAAAAGCATTGGGGCATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
||
| 3UTR CAA 72 bp | GAATCCACATCTTTGAATCTTATCATTTCTCAGATGTaGCTGCTGGGTTGCTTCTCTGAGAATATAATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: ESTSLNLIISQM*LLGCFSENIIQ Trigger: CTGGATTATATTCTCAGAGAAGCAACCCAGCAGCAACATCTGAGAAATGATAAGATTCAAAGATGTGGATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | ATGGGAAGTGGTAACTGGCAAGCCCGGGGCACAGATGCAAGGAGGCATTCCCAGGAGTCTAGGACCATTTaGTTGCCTTGGTCTGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: MGSGNWQARGTDARRHSQESRTI*LPWSGS Trigger: ACTGCCAGACCAAGGCAACAAAATGGTCCTAGACTC...CTGGGAATGCCTCCTTGCATCTGTGCCCCGGGCTTGCCAGTTACCACTTCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | GGCAAGCCCGGGGCACAGATGCAAGGAGGCATTCCCAGCACGAGCATTCACGCTACTCCTTCTGGAAGATaGCTTTGGAGTACTTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: GKPGAQMQGGIPSTSIHATPSGR*LWSTSK Trigger: CTTGGAAGTACTCCAAAGCAATCTTCCAGAAGGAGT...AGCGTGAATGCTCGTGCTGGGAATGCCTCCTTGCATCTGTGCCCCGGGCTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | TTAACCCTGATCTTGCAGGAGCAGCTTCTCGGAGACCAACAATCACATGAAGGGGAGTCTAGGACCATTTaGTTGCCTTGGTCTGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LTLILQEQLLGDQQSHEGESRTI*LPWSGS Trigger: ACTGCCAGACCAAGGCAACAAAATGGTCCTAGACTC...CCCTTCATGTGATTGTTGGTCTCCGAGAAGCTGCTCCTGCAAGATCAGGGTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | ACACACACACACAAACACACACACACTGGCAACAGCAGACATTTATTAGGTGGAACTCCTTCTGGAAGATaGCTTTGGAGTACTTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: THTHKHTHTGNSRHLLGGTPSGR*LWSTSK Trigger: CTTGGAAGTACTCCAAAGCAATCTTCCAGAAGGAGT...TCCACCTAATAAATGTCTGCTGTTGCCAGTGTGTGTGTGTTTGTGTGTGTGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146003.9 ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | TCAAGGAGACCAGACTGTGAACAGATCTACTTAATTATGCCCCAATGCTTTTATTTTGCTTTCTTCTTTTaGGGCTCCTGCACTTTCACC | + |
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Preference number: 5 (lower is better) Translates to: SRRPDCEQIYLIMPQCFYFAFFF*GSCTFT Trigger: GGTGAAAGTGCAGGAGCCCAAAAAGAAGAAAGCAAA...ATAAAAGCATTGGGGCATAATTAAGTAGATCTGTTCACAGTCTGGTCTCCTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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| CDS-3UTR CAA 90 bp | ATTATGCCCCAATGCTTTTATTTAAACCTAAAGTCCATGTCAGTCCATAAAGTCCTGGAGTTGTTAGAGTaGGGGAACTTTTCCCTAATA | + |
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Preference number: 5 (lower is better) Translates to: IMPQCFYLNLKSMSVHKVLELLE*GNFSLI Trigger: TATTAGGGAAAAGTTCCCCAACTCTAACAACTCCAG...GACTTTATGGACTGACATGGACTTTAGGTTTAAATAAAAGCATTGGGGCATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000064334.3 |
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| CDS GCA 72 bp | TCTCCCAAACTTCTGAACCTTAGGAGGGAAAAGCCTTaGTTAGAAACAGTATTGGTCCACACACCCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: SPKLLNLRREKP*LETVLVHTPST Trigger: GGTGCTGGGTGTGTGGACCAATACTGTTTCTAAGCAAGGCTTTTCCCTCCTAAGGTTCAGAAGTTTGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150042.8 |
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