RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRPL46 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030612

Ensembl transcript IDs: ENSMUST00000032841.7

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCTATAGAGAAATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTaGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACAC +
Preference number: 1 (lower is better)
Translates to: CYREISCPICPGPLH*VKPVVHQGQIKIQH
Trigger: GTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATTTCTCTATAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
3UTR-3UTR TCA 90 bp AGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAAATTGAGTCTGCTTCTTaGCAGTCCTGTAAATGGTCT +
Preference number: 2 (lower is better)
Translates to: SCPICPGPLHWVKPVVHQIESAS*QSCKWS
Trigger: AGACCATTTACAGGACTGTCAAGAAGCAGACTCAAT...TTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
3UTR CCA 72 bp GAAATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTaGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAA +
Preference number: 3 (lower is better)
Translates to: EISCPICPGPLH*VKPVVHQGQIK
Trigger: TTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
3UTR-3UTR CAA 90 bp AATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACATTTAATTCTCGAATaGAGTCTGCTTCTTGACAGT +
Preference number: 3 (lower is better)
Translates to: NKLSNLSWPSSLGKASCPHLILE*SLLLDS
Trigger: ACTGTCAAGAAGCAGACTCAATTCGAGAATTAAATG...TGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR GCA 90 bp AAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCACCCGCCATCTCTTCCTaGAATGGAGTGAGCGCCTTG +
Preference number: 4 (lower is better)
Translates to: KLSNLSWPSSLGKASCPPPAISS*NGVSAL
Trigger: CAAGGCGCTCACTCCATTGCAGGAAGAGATGGCGGG...TGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCATTCTTTGCCAGTCGCTaGGCTTCATCCAGAGCACGG +
Preference number: 4 (lower is better)
Translates to: KLSNLSWPSSLGKASCPPFFASR*ASSRAR
Trigger: CCGTGCTCTGGATGAAGCTCAGCGACTGGCAAAGAA...TGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAAGGCTGCCACTCGACTTaGGGAAGCATCCAAACATCT +
Preference number: 4 (lower is better)
Translates to: SCPICPGPLHWVKPVVHQGCHST*GSIQTS
Trigger: AGATGTTTGGATGCTTCCTCAAGTCGAGTGGCAGCC...TTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAAACGGAGCTCATGGTCTaGATACAGGCTTCTCTCTAC +
Preference number: 4 (lower is better)
Translates to: SCPICPGPLHWVKPVVHQTELMV*IQASLY
Trigger: GTAGAGAGAAGCCTGTATTCAGACCATGAGCTCCGT...TTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCATTGCCTTGGGGAACTTaGACTTGTAGTGGCCACAGG +
Preference number: 4 (lower is better)
Translates to: NKLSNLSWPSSLGKASCPLPWGT*TCSGHR
Trigger: CCTGTGGCCACTACAAGTTCAAGTTCCCCAAGGCAA...TGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCATTCCATGTTGTTTTCTaGGAGTGTGGCCAGGATTCG +
Preference number: 4 (lower is better)
Translates to: NKLSNLSWPSSLGKASCPFHVVF*ECGQDS
Trigger: CGAATCCTGGCCACACTCTCAGAAAACAACATGGAA...TGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CCA 90 bp AAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAAGCATCCAAACATCTTaGTCTCCAAGTTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: KLSNLSWPSSLGKASCPPSIQTS*SPSFSL
Trigger: CAGAGAGAAACTTGGAGACCAAGATGTTTGGATGCT...TGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp TGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACCAGGAGAAATCGCCTaGCCTGAGCCAGGTACTTGG +
Preference number: 4 (lower is better)
Translates to: WVKPVVHQGQIKIQHNDRPGEIA*PEPGTW
Trigger: CCAAGTACCTGGCTCAGGTCAGGCGATTTCTCCTGG...TCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CCA 90 bp CACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACCCTGAGCCAGGTACTTaGGCTGCAGATAGTCACCCA +
Preference number: 4 (lower is better)
Translates to: HWVKPVVHQGQIKIQHNDPEPGT*AADSHP
Trigger: TGGGTGACTATCTGCAGCCCAAGTACCTGGCTCAGG...GTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CCA 90 bp CACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACCATCTCTTCCTGCAATaGAGTGAGCGCCTTGGTGAT +
Preference number: 4 (lower is better)
Translates to: HWVKPVVHQGQIKIQHNDHLFLQ*SERLGD
Trigger: ATCACCAAGGCGCTCACTCCATTGCAGGAAGAGATG...GTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp CTTCACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATAGGTCACTCTCTGTCTaGATTGCCTTGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: LHWVKPVVHQGQIKIQHNRSLSV*IALGNL
Trigger: CAAGTTCCCCAAGGCAATTCAGACAGAGAGTGACCT...ATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR GCA 90 bp TGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACTCTTTTTCCCAGCCTaGACAAAGTCTCCAGTGAGC +
Preference number: 4 (lower is better)
Translates to: WVKPVVHQGQIKIQHNDRLFFPA*TKSPVS
Trigger: GCTCACTGGAGACTTTGTGCAGGCTGGGAAAAAGAG...TCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR GCA 90 bp AGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTGTCAGCTTTCTTCTTTaGCAGTCGCTGAGCTTCATC +
Preference number: 4 (lower is better)
Translates to: SQLSTKDKSKFNTMTDTFVSFLL*QSLSFI
Trigger: GATGAAGCTCAGCGACTGGCAAAGAAGAAAGCTGAC...AAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR TCA 90 bp AGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTCTCCAAGTTTCTCTCTaGCTAAGAGGACAAGGTTTC +
Preference number: 4 (lower is better)
Translates to: SQLSTKDKSKFNTMTDTFLQVSL*LRGQGF
Trigger: GAAACCTTGTCCTCTTAGTCAGAGAGAAACTTGGAG...AAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CCA 90 bp CAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTAATAGAGCACGGAGCTCATaGTCTGAATACAGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: QLSTKDKSKFNTMTDTFNRARSS*SEYRLL
Trigger: GAGAAGCCTGTATTCAGACCATGAGCTCCGTGCTCT...ATTAAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR GCA 90 bp CAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTAATAACTGTAGGAATGCCTaGTCCCACATATCTTCTAAG +
Preference number: 4 (lower is better)
Translates to: QLSTKDKSKFNTMTDTFNNCRNA*SHISSK
Trigger: CTTAGAAGATATGTGGGAGCAGGCATTCCTACAGTT...ATTAAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR GCA 90 bp CAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTAATACTCTCTGTCTGAATTaGCTTGGGGAACTTGAACTT +
Preference number: 4 (lower is better)
Translates to: QLSTKDKSKFNTMTDTFNTLCLN*LGELEL
Trigger: AAGTTCAAGTTCCCCAAGGCAATTCAGACAGAGAGT...ATTAAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CCA 90 bp CAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTAATCATTCCCTAGGAACTTaGCTTCCATGTTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: QLSTKDKSKFNTMTDTFNHSLGT*LPCCFL
Trigger: CAGAAAACAACATGGAAGCCAAGTTCCTAGGGAATG...ATTAAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 90 bp GCCGCTGCAGACACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTaGTTGAGGACGCAGCCTCAAGGGACAAGCCACGAGAACTACCTG +
Preference number: 5 (lower is better)
Translates to: AAADTRRPTSAMETG*LRTQPQGTSHENYL
Trigger: CAGGTAGTTCTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAGCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CCA 90 bp CGCCATCTCTTCCTGCAATGGAGTGAGCGCCTTGGTGATCAGCGGTaGCCGCTGCAGACACAAGGCGCCCGACAAGCGCCATGGAGACCG +
Preference number: 5 (lower is better)
Translates to: RHLFLQWSERLGDQR*PLQTQGARQAPWRP
Trigger: CGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAAGAGATGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 90 bp CTGCAGACACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTGCTTaGGGACGCAGCCTCAAGGGACAAGCCACGAGAACTACCTGCCCA +
Preference number: 5 (lower is better)
Translates to: LQTQGARQAPWRPAA*GRSLKGQATRTTCP
Trigger: TGGGCAGGTAGTTCTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 90 bp TCTTCCTGCAATGGAGTGAGCGCCTTGGTGATCAGCGGTGGCCGCTaGAGACACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: SSCNGVSALVISGGR*RHKAPDKRHGDRLL
Trigger: AAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 90 bp CGCTCAGCTGTCCCCCGAAGGGTCTCCCCGGGCTGCCACTCGACTTaGGGAAGCATCCAAACATCTTGGTCTCCAAGTTTCTCTCTGACT +
Preference number: 5 (lower is better)
Translates to: RSAVPRRVSPGCHST*GSIQTSWSPSFSLT
Trigger: AGTCAGAGAGAAACTTGGAGACCAAGATGTTTGGATGCTTCCTCAAGTCGAGTGGCAGCCCGGGGAGACCCTTCGGGGGACAGCTGAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 90 bp CTTCTCTCTACCTCGATCTGCTGTAATAGACCCGCCATCTCTTCCTaGAATGGAGTGAGCGCCTTGGTGATCAGCGGTGGCCGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: LLSTSICCNRPAISS*NGVSALVISGGRCR
Trigger: TCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAAGAGATGGCGGGTCTATTACAGCAGATCGAGGTAGAGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CCA 90 bp GAGCCAGGTACTTGGGCTGCAGATAGTCACCCAGCTCTTCCTTACTaGCCCACACATGGCGGCTCTTTTTCCCAGCCTGCACAAAGTCTC +
Preference number: 5 (lower is better)
Translates to: EPGTWAADSHPALPY*PTHGGSFSQPAQSL
Trigger: GAGACTTTGTGCAGGCTGGGAAAAAGAGCCGCCATGTGTGGGCCAGTAAGGAAGAGCTGGGTGACTATCTGCAGCCCAAGTACCTGGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 90 bp AGCTCTTCCTTACTGGCCCACACATGGCGGCTCTTTTTCCCAGCCTaGACAAAGTCTCCAGTGAGCAGCAGAGCTTTGAAGAAGAAGACC +
Preference number: 5 (lower is better)
Translates to: SSSLLAHTWRLFFPA*TKSPVSSRALKKKT
Trigger: GGTCTTCTTCTTCAAAGCTCTGCTGCTCACTGGAGACTTTGTGCAGGCTGGGAAAAAGAGCCGCCATGTGTGGGCCAGTAAGGAAGAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 90 bp TCAGCTTCTGTTTCCCGAGCTCCAGGTCTGAACTGTAGGAATGCCTaGTCCCACATATCTTCTAAGTCTTGTGCGAGCGTAATGCCCTGC +
Preference number: 5 (lower is better)
Translates to: SASVSRAPGLNCRNA*SHISSKSCASVMPC
Trigger: GCAGGGCATTACGCTCGCACAAGACTTAGAAGATATGTGGGAGCAGGCATTCCTACAGTTCAGACCTGGAGCTCGGGAAACAGAAGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp AAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAGGTCAGCTTTCTTCTTaGCCAGTCGCTGAGCTTCAT +
Preference number: 5 (lower is better)
Translates to: KLSNLSWPSSLGKASCPPGQLSS*PVAELH
Trigger: ATGAAGCTCAGCGACTGGCAAAGAAGAAAGCTGACC...TGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp AGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCACCAATTGAAGAAGAAGACCTaGACCCCAAGGTCACTCTCT +
Preference number: 5 (lower is better)
Translates to: SCPICPGPLHWVKPVVHQLKKKT*TPRSLS
Trigger: AGAGAGTGACCTTGGGGTCAAGGTCTTCTTCTTCAA...TTGGTGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp TCTTCACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAAATGGAGACCGGCTGCTaGAGGACGCAGCCTCAAGGG +
Preference number: 5 (lower is better)
Translates to: SSLGKASCPPRTNQNSTQMETGC*RTQPQG
Trigger: CCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCAT...TTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp AATAAGCTGTCCAATCTGTCCTGGCCCTCTTCACTGGGTAAAGCCAGTTGTCCAGTGAGCAGCAGAGCTTaGAAGAAGAAGACCTTGACC +
Preference number: 5 (lower is better)
Translates to: NKLSNLSWPSSLGKASCPVSSRA*KKKTLT
Trigger: GGTCAAGGTCTTCTTCTTCAAAGCTCTGCTGCTCAC...TGGACAACTGGCTTTACCCAGTGAAGAGGGCCAGGACAGATTGGACAGCTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 90 bp CGACTTGAGGAAGCATCCAAACATCTTGGTCTCCAAGTTTCTCTCTaGCTAAGAGGACAAGGTTTCTGTCTAGCTTTCGATGCAACGAGG +
Preference number: 5 (lower is better)
Translates to: RLEEASKHLGLQVSL*LRGQGFCLAFDATR
Trigger: CCTCGTTGCATCGAAAGCTAGACAGAAACCTTGTCCTCTTAGTCAGAGAGAAACTTGGAGACCAAGATGTTTGGATGCTTCCTCAAGTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp TCTTCACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAAAACTTGGCTTCCATGTaGTTTTCTGAGAGTGTGGCC +
Preference number: 5 (lower is better)
Translates to: SSLGKASCPPRTNQNSTQNLASM*FSESVA
Trigger: GGCCACACTCTCAGAAAACAACATGGAAGCCAAGTT...TTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp CACTGGGTAAAGCCAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAAGCATCCAAACATCTaGGTCTCCAAGTTTCTCTCT +
Preference number: 5 (lower is better)
Translates to: HWVKPVVHQGQIKIQHNDKHPNI*VSKFLS
Trigger: AGAGAGAAACTTGGAGACCAAGATGTTTGGATGCTT...GTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTGGCTTTACCCAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS-3UTR CAA 90 bp CAGTTGTCCACCAAGGACAAATCAAAATTCAACACAATGACAGACACATTTAATGCATTCCCTAGGAACTaGGCTTCCATGTTGTTTTCT +
Preference number: 5 (lower is better)
Translates to: QLSTKDKSKFNTMTDTFNAFPRN*ASMLFS
Trigger: AGAAAACAACATGGAAGCCAAGTTCCTAGGGAATGC...ATTAAATGTGTCTGTCATTGTGTTGAATTTTGATTTGTCCTTGGTGGACAACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp GACACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTaGTTGAGGACGCAGCCTCAAGGGACAAGCCACGAG +
Preference number: 6 (lower is better)
Translates to: DTRRPTSAMETG*LRTQPQGTSHE
Trigger: CTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 90 bp GCTGCAGACACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTGCTaGAGGACGCAGCCTCAAGGGACAAGCCACGAGAACTACCTGCCC +
Preference number: 6 (lower is better)
Translates to: AADTRRPTSAMETGC*RTQPQGTSHENYLP
Trigger: GGGCAGGTAGTTCTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 72 bp CAAGGCGCCCGACAAGCGCCATGGAGACCGGCTGCTTaGGGACGCAGCCTCAAGGGACAAGCCACGAGAACT +
Preference number: 6 (lower is better)
Translates to: QGARQAPWRPAA*GRSLKGQATRT
Trigger: AGTTCTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp AATGGAGTGAGCGCCTTGGTGATCAGCGGTGGCCGCTaGAGACACAAGGCGCCCGACAAGCGCCATGGAGAC +
Preference number: 6 (lower is better)
Translates to: NGVSALVISGGR*RHKAPDKRHGD
Trigger: GTCTCCATGGCGCTTGTCGGGCGCCTTGTGTCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CCA 72 bp TTCCTGCAATGGAGTGAGCGCCTTGGTGATCAGCGGTaGCCGCTGCAGACACAAGGCGCCCGACAAGCGCCA +
Preference number: 6 (lower is better)
Translates to: FLQWSERLGDQR*PLQTQGARQAP
Trigger: TGGCGCTTGTCGGGCGCCTTGTGTCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 72 bp ACAAGGCGCCCGACAAGCGCCATGGAGACCGGCTGCTaGAGGACGCAGCCTCAAGGGACAAGCCACGAGAAC +
Preference number: 6 (lower is better)
Translates to: TRRPTSAMETGC*RTQPQGTSHEN
Trigger: GTTCTCGTGGCTTGTCCCTTGAGGCTGCGTCCTCAAGCAGCCGGTCTCCATGGCGCTTGTCGGGCGCCTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 72 bp AGACCCGCCATCTCTTCCTGCAATGGAGTGAGCGCCTaGGTGATCAGCGGTGGCCGCTGCAGACACAAGGCG +
Preference number: 6 (lower is better)
Translates to: RPAISSCNGVSA*VISGGRCRHKA
Trigger: CGCCTTGTGTCTGCAGCGGCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAAGAGATGGCGGGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 90 bp TCGCTCAGCTGTCCCCCGAAGGGTCTCCCCGGGCTGCCACTCGACTaGAGGAAGCATCCAAACATCTTGGTCTCCAAGTTTCTCTCTGAC +
Preference number: 6 (lower is better)
Translates to: SLSCPPKGLPGLPLD*RKHPNILVSKFLSD
Trigger: GTCAGAGAGAAACTTGGAGACCAAGATGTTTGGATGCTTCCTCAAGTCGAGTGGCAGCCCGGGGAGACCCTTCGGGGGACAGCTGAGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 72 bp GTCCCCCGAAGGGTCTCCCCGGGCTGCCACTCGACTTaGGGAAGCATCCAAACATCTTGGTCTCCAAGTTTC +
Preference number: 6 (lower is better)
Translates to: VPRRVSPGCHST*GSIQTSWSPSF
Trigger: GAAACTTGGAGACCAAGATGTTTGGATGCTTCCTCAAGTCGAGTGGCAGCCCGGGGAGACCCTTCGGGGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp AAGCCACGAGAACTACCTGCCCAGAACCTGTCAAGCTaGCGCCAGCCTCTAGCCAGCCCTAAAAGAGTACGC +
Preference number: 6 (lower is better)
Translates to: KPRELPAQNLSS*RQPLASPKRVR
Trigger: GCGTACTCTTTTAGGGCTGGCTAGAGGCTGGCGGCAGCTTGACAGGTTCTGGGCAGGTAGTTCTCGTGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp ACCTCGATCTGCTGTAATAGACCCGCCATCTCTTCCTaGAATGGAGTGAGCGCCTTGGTGATCAGCGGTGGC +
Preference number: 6 (lower is better)
Translates to: TSICCNRPAISS*NGVSALVISGG
Trigger: GCCACCGCTGATCACCAAGGCGCTCACTCCATTGCAGGAAGAGATGGCGGGTCTATTACAGCAGATCGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CCA 72 bp ACTTGGGCTGCAGATAGTCACCCAGCTCTTCCTTACTaGCCCACACATGGCGGCTCTTTTTCCCAGCCTGCA +
Preference number: 6 (lower is better)
Translates to: TWAADSHPALPY*PTHGGSFSQPA
Trigger: TGCAGGCTGGGAAAAAGAGCCGCCATGTGTGGGCCAGTAAGGAAGAGCTGGGTGACTATCTGCAGCCCAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 72 bp TGTCCCCCGAAGGGTCTCCCCGGGCTGCCACTCGACTaGAGGAAGCATCCAAACATCTTGGTCTCCAAGTTT +
Preference number: 6 (lower is better)
Translates to: CPPKGLPGLPLD*RKHPNILVSKF
Trigger: AAACTTGGAGACCAAGATGTTTGGATGCTTCCTCAAGTCGAGTGGCAGCCCGGGGAGACCCTTCGGGGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 72 bp CCAGCCTGCACAAAGTCTCCAGTGAGCAGCAGAGCTTaGAAGAAGAAGACCTTGACCCCAAGGTCACTCTCT +
Preference number: 6 (lower is better)
Translates to: PACTKSPVSSRA*KKKTLTPRSLS
Trigger: AGAGAGTGACCTTGGGGTCAAGGTCTTCTTCTTCAAAGCTCTGCTGCTCACTGGAGACTTTGTGCAGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 72 bp CAAGGTCACTCTCTGTCTGAATTGCCTTGGGGAACTTaGACTTGTAGTGGCCACAGGGTGCATTCCCTAGGA +
Preference number: 6 (lower is better)
Translates to: QGHSLSELPWGT*TCSGHRVHSLG
Trigger: TCCTAGGGAATGCACCCTGTGGCCACTACAAGTTCAAGTTCCCCAAGGCAATTCAGACAGAGAGTGACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp GTTTCCCGAGCTCCAGGTCTGAACTGTAGGAATGCCTaGTCCCACATATCTTCTAAGTCTTGTGCGAGCGTA +
Preference number: 6 (lower is better)
Translates to: VSRAPGLNCRNA*SHISSKSCASV
Trigger: TACGCTCGCACAAGACTTAGAAGATATGTGGGAGCAGGCATTCCTACAGTTCAGACCTGGAGCTCGGGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS GCA 72 bp CTCTTGTTCCTCATCATAAAGGTCAGCTTTCTTCTTTaGCAGTCGCTGAGCTTCATCCAGAGCACGGAGCTC +
Preference number: 6 (lower is better)
Translates to: LLFLIIKVSFLL*QSLSFIQSTEL
Trigger: GAGCTCCGTGCTCTGGATGAAGCTCAGCGACTGGCAAAGAAGAAAGCTGACCTTTATGATGAGGAACAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS CAA 72 bp GCTCTTGTTCCTCATCATAAAGGTCAGCTTTCTTCTTaGCCAGTCGCTGAGCTTCATCCAGAGCACGGAGCT +
Preference number: 6 (lower is better)
Translates to: ALVPHHKGQLSS*PVAELHPEHGA
Trigger: AGCTCCGTGCTCTGGATGAAGCTCAGCGACTGGCAAAGAAGAAAGCTGACCTTTATGATGAGGAACAAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7
CDS TCA 72 bp GAAGCATCCAAACATCTTGGTCTCCAAGTTTCTCTCTaGCTAAGAGGACAAGGTTTCTGTCTAGCTTTCGAT +
Preference number: 6 (lower is better)
Translates to: EASKHLGLQVSL*LRGQGFCLAFD
Trigger: ATCGAAAGCTAGACAGAAACCTTGTCCTCTTAGTCAGAGAGAAACTTGGAGACCAAGATGTTTGGATGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032841.7