Pregenerated sensors for MRPL43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025208Ensembl transcript IDs: ENSMUST00000097715.4
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | ATCTTCTTACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGACTTaGACTAAGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGCT | + |
Preference number: 1 (lower is better) Translates to: IFLQMVVSHHVVAGT*TKDLWKSSRVLLPA Trigger: AGCAGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCTTAGTTCAAGTCCCGGCAACCACATGGTGGCTCACAACCATCTGTAAGAAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR GCA 90 bp | CTTCCTAAACTGCACACAAACACGGATATAAGGTGCCTTGCCCAATaGCATACCAGCAAGAGCAACAGGGCATCCCGTGTCCTTCAGAAG | + |
Preference number: 1 (lower is better) Translates to: LPKLHTNTDIRCLAQ*HTSKSNRASRVLQK Trigger: CTTCTGAAGGACACGGGATGCCCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR TCA 90 bp | CAAGTGTTGTACACTTCTCACATCTCAGCTTGCAAGGAGGCCAATTaGATCAGAATTAGGGTATTCACAAGGTCACTGCACCTAGCTACA | + |
Preference number: 1 (lower is better) Translates to: QVLYTSHISACKEAN*IRIRVFTRSLHLAT Trigger: TGTAGCTAGGTGCAGTGACCTTGTGAATACCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAGTGTACAACACTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR-3UTR TCA 90 bp | CCTAAACTGCACACAAACACGGATATAAGGTGCCTTGCCCAATGCCATACCAGCTGCAAGGAGGCCAATTaGATCAGAATTAGGGTATTC | + |
Preference number: 2 (lower is better) Translates to: PKLHTNTDIRCLAQCHTSCKEAN*IRIRVF Trigger: GAATACCCTAATTCTGATTCAATTGGCCTCCTTGCA...GCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR-3UTR GCA 90 bp | AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAAAACACGGATATAAGGTaGCTTGCCCAATGCCATACC | + |
Preference number: 2 (lower is better) Translates to: NQMLGLKVMHYQRQAHLQNTDIR*LAQCHT Trigger: GGTATGGCATTGGGCAAGGCACCTTATATCCGTGTT...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR-3UTR CCA 90 bp | AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAAGCACCTAGCTACAAGTaGGCAAAGGAAAAGGTTCTT | + |
Preference number: 2 (lower is better) Translates to: NQMLGLKVMHYQRQAHLQAPSYK*AKEKVL Trigger: AAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGC...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR CAA 90 bp | ATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTaGAAGTCATTATTATTCGTATTTCAGAAAACACGGTCCTTGTAC | + |
Preference number: 2 (lower is better) Translates to: IPCPSEDSLQTLSCV*KSLLFVFQKTRSLY Trigger: GTACAAGGACCGTGTTTTCTGAAATACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGTTGCCGGGACTTaGACTAAGGACCTTTGGAAGAGCAGTCGGGTGCTC | + |
Preference number: 3 (lower is better) Translates to: QMVVSHHVVAGT*TKDLWKSSRVL Trigger: GAGCACCCGACTGCTCTTCCAAAGGTCCTTAGTTCAAGTCCCGGCAACCACATGGTGGCTCACAACCATCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR GCA 72 bp | CTGCACACAAACACGGATATAAGGTGCCTTGCCCAATaGCATACCAGCAAGAGCAACAGGGCATCCCGTGTC | + |
Preference number: 3 (lower is better) Translates to: LHTNTDIRCLAQ*HTSKSNRASRV Trigger: GACACGGGATGCCCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR-3UTR CAA 90 bp | AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGCTACTCGGCCTGAGCTaGAAATCCAAAAGAGGAACC | + |
Preference number: 3 (lower is better) Translates to: SNRASRVLQKTASRLFHVLLGLS*KSKRGT Trigger: GGTTCCTCTTTTGGATTTCAAGCTCAGGCCGAGTAG...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR GCA 72 bp | CAACTTCCTAAACTGCACACAAACACGGATATAAGGTaGCTTGCCCAATGCCATACCAGCAAGAGCAACAGG | + |
Preference number: 3 (lower is better) Translates to: QLPKLHTNTDIR*LAQCHTSKSNR Trigger: CCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGGAAGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR-3UTR CAA 90 bp | AACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTGTCCTTGTACAAGTGTaGTACACTTCTCACATCTCA | + |
Preference number: 3 (lower is better) Translates to: NRASRVLQKTASRLFHVFVLVQV*YTSHIS Trigger: TGAGATGTGAGAAGTGTACAACACTTGTACAAGGAC...AAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR TCA 72 bp | CTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTaGAGTCATTATTATTCGTATTTCAGAAAACACGGT | + |
Preference number: 3 (lower is better) Translates to: LQKTASRLFHVF*SHYYSYFRKHG Trigger: ACCGTGTTTTCTGAAATACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGGCCACTGGCCCTGGATaGTCGGGTTGTCCGTGTGGA | + |
Preference number: 4 (lower is better) Translates to: SNRASRVLQKTASRLFHVATGPG*SGCPCG Trigger: TCCACACGGACAACCCGAGCATCCAGGGCCAGTGGC...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGGGTGCCACTGGCCCTaGATGCTCGGGTTGTCCGTG | + |
Preference number: 4 (lower is better) Translates to: TGHPVSFRRQPPDSFMCFGCHWP*MLGLSV Trigger: CACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTC | + |
Preference number: 4 (lower is better) Translates to: SNRASRVLQKTASRLFHVLLVKG*HWPWML Trigger: GAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAA...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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3UTR CAA 72 bp | CGGCTGGTAGGCTCCACCCACCTACTCGGCCTGAGCTaGAAATCCAAAAGAGGAACCAATCCTATCCCTCTC | + |
Preference number: 4 (lower is better) Translates to: RLVGSTHLLGLS*KSKRGTNPIPL Trigger: GAGAGGGATAGGATTGGTTCCTCTTTTGGATTTCAAGCTCAGGCCGAGTAGGTGGGTGGAGCCTACCAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCA | + |
Preference number: 4 (lower is better) Translates to: TGHPVSFRRQPPDSFMCFPCGRA*GCGSHP Trigger: TGGATGTGATCCGCATCCGCAAGCCCTTCCACACGG...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTGCTTGCATCGAAGCTaGAGCAGAATCCCGGAGTTC | + |
Preference number: 4 (lower is better) Translates to: SNRASRVLQKTASRLFHVCLHRS*SRIPEF Trigger: GAACTCCGGGATTCTGCTCCAGCTTCGATGCAAGCA...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | TGTACACTTCTCACATCTCAGCTTGCAAGGAGGCCAATTGAATCAGAATTAGGGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGG | + |
Preference number: 4 (lower is better) Translates to: CTLLTSQLARRPIESELGLGLSV*KGLRMR Trigger: CCGCATCCGCAAGCCCTTCCACACGGACAACCCGAG...CCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAGTGTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCC | + |
Preference number: 4 (lower is better) Translates to: TGHPVSFRRQPPDSFMCFWSASF*TNDLIS Trigger: GGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCA...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR TCA 90 bp | CTTCTCACATCTCAGCTTGCAAGGAGGCCAATTGAATCAGAATTAGGGTATTCACAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCT | + |
Preference number: 4 (lower is better) Translates to: LLTSQLARRPIESELGYSQSVCW*RGATGP Trigger: AGGGCCAGTGGCACCCCTTCACCAACAAACGGACTG...TGAATACCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAACAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGA | + |
Preference number: 4 (lower is better) Translates to: NQMLGLKVMHYQRQAHLQQAGLV*QLLHQR Trigger: TCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTG...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACC | + |
Preference number: 4 (lower is better) Translates to: SFLVFETGLSWNSLCRPSTSKPD*SASFCT Trigger: GGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGT...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTC | + |
Preference number: 4 (lower is better) Translates to: SFLVFETGLSWNSLCRPSVYYDS*VPSGEV Trigger: GACTTCGCCCGACGGAACCCAGGAGTCGTAGTATAC...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CCA 90 bp | TTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGAAGTCATTATTATTCGTGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTG | + |
Preference number: 4 (lower is better) Translates to: FRRQPPDSFMCFEVIIIRVKGCH*PWMLGL Trigger: CAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCAC...ACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR GCA 90 bp | TTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGAAGTCATTATTATTCGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGG | + |
Preference number: 4 (lower is better) Translates to: FRRQPPDSFMCFEVIIIRGRACG*GSHPSR Trigger: CCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCC...ACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 90 bp | CTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTG | + |
Preference number: 5 (lower is better) Translates to: LGRSPWRAVRLLVKG*HWPWMLGLSVWKGL Trigger: CAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS TCA 90 bp | GGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGA | + |
Preference number: 5 (lower is better) Translates to: GVLWAAARGGQSVCW*RGATGPGCSGCPCG Trigger: TCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | CGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATG | + |
Preference number: 5 (lower is better) Translates to: RSPWRAVRLLVKGCH*PWMLGLSVWKGLRM Trigger: CATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | TCGTGGCATGGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTCGGTCACCTCGCGTTCCACGAACTC | + |
Preference number: 5 (lower is better) Translates to: SWHGARARVHVYYDS*VPSGEVGHLAFHEL Trigger: GAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | CCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTaGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATGCGGATC | + |
Preference number: 5 (lower is better) Translates to: PWRAVRLLVKGCHWP*MLGLSVWKGLRMRI Trigger: GATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | ATCGAAGCTGGAGCAGAATCCCGGAGTTCTCTGGGCCGCAGCCCGTaGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTGG | + |
Preference number: 5 (lower is better) Translates to: IEAGAESRSSLGRSP*RAVRLLVKGCHWPW Trigger: CCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCCAGCTTCGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 90 bp | GGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCT | + |
Preference number: 5 (lower is better) Translates to: GATGPGCSGCPCGRA*GCGSHPSRTGLPAS Trigger: AGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 90 bp | ACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTGCACCA | + |
Preference number: 5 (lower is better) Translates to: TGPGCSGCPCGRACG*GSHPSRTGLPASAP Trigger: TGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | TTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCT | + |
Preference number: 5 (lower is better) Translates to: LVKGCHWPWMLGLSV*KGLRMRITSKPDWS Trigger: AGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | TCCGTGTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGAC | + |
Preference number: 5 (lower is better) Translates to: SVWKGLRMRITSKPD*SASFCTNDLISSTD Trigger: GTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 90 bp | GTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTTGCT | + |
Preference number: 5 (lower is better) Translates to: VEGLADADHIQAGLV*QLLHQRLDLLHRLA Trigger: AGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 90 bp | GTTTTCCTCGCGCACAGCCCCATTAAGGTATTCGGCCACTATTCGTaGCATGGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTGG | + |
Preference number: 5 (lower is better) Translates to: VFLAHSPIKVFGHYS*HGARARVHVYYDSW Trigger: CCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACCTTAATGGGGCTGTGCGCGAGGAAAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CAA 90 bp | AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTG | + |
Preference number: 5 (lower is better) Translates to: SNRASRVLQKTASRLFHVPWMLG*SVWKGL Trigger: CAAGCCCTTCCACACGGACAACCCGAGCATCCAGGG...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 90 bp | TTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCCTCCACCGACTTGCTGTTGACGTTT | + |
Preference number: 5 (lower is better) Translates to: LRMRITSKPDWSASF*TNDLISSTDLLLTF Trigger: AAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CAA 90 bp | ACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCAGGCCATCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCC | + |
Preference number: 5 (lower is better) Translates to: TAPSYKWAKEKVLLYLRPSVWKG*RMRITS Trigger: GGATGTGATCCGCATCCGCAAGCCCTTCCACACGGA...TGGCCTGAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CAA 90 bp | GTCACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCAGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGG | + |
Preference number: 5 (lower is better) Translates to: VTAPSYKWAKEKVLLYLRRAVRL*VKGCHW Trigger: CCAGTGGCACCCCTTCACCAACAAACGGACTGCCCT...CCTGAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CAA 90 bp | AAGGTCACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCTGGAGGGCAGTCCGTTaGTTGGTGAAGGGGTGCCAC | + |
Preference number: 5 (lower is better) Translates to: KVTAPSYKWAKEKVLLYLWRAVR*LVKGCH Trigger: GTGGCACCCCTTCACCAACAAACGGACTGCCCTCCA...GAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGTGACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS-3UTR CAA 90 bp | TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACA | + |
Preference number: 5 (lower is better) Translates to: SFLVFETGLSWNSLCRPSSTDLL*TFSSRT Trigger: TGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGA...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | TCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGG | + |
Preference number: 6 (lower is better) Translates to: SLGRSPWRAVRL*VKGCHWPWMLG Trigger: CCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | TCCCGGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTG | + |
Preference number: 6 (lower is better) Translates to: SRSSLGRSPWRAVRL*VKGCHWPWMLGLSV Trigger: CACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS TCA 72 bp | TGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGT | + |
Preference number: 6 (lower is better) Translates to: WAAARGGQSVCW*RGATGPGCSGC Trigger: ACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | GGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTCGGTCACCTCGCGTTC | + |
Preference number: 6 (lower is better) Translates to: GARARVHVYYDS*VPSGEVGHLAF Trigger: GAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | GAATCCCGGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTaGTTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCC | + |
Preference number: 6 (lower is better) Translates to: ESRSSLGRSPWRAVR*LVKGCHWPWMLGLS Trigger: GGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 72 bp | AGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGG | + |
Preference number: 6 (lower is better) Translates to: SPWRAVRLLVKG*HWPWMLGLSVW Trigger: CCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | GGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGGATCACATCCAAGCCG | + |
Preference number: 6 (lower is better) Translates to: GCHWPWMLGLSV*KGLRMRITSKP Trigger: CGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | GGAGCAGAATCCCGGAGTTCTCTGGGCCGCAGCCCGTaGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCAC | + |
Preference number: 6 (lower is better) Translates to: GAESRSSLGRSP*RAVRLLVKGCH Trigger: GTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | GGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTC | + |
Preference number: 6 (lower is better) Translates to: GCHWPWMLGLSVWKG*RMRITSKPDWSASF Trigger: GAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 72 bp | GGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCAAGCCGGACTGGTCTG | + |
Preference number: 6 (lower is better) Translates to: GPGCSGCPCGRA*GCGSHPSRTGL Trigger: CAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | TGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGC | + |
Preference number: 6 (lower is better) Translates to: WRAVRLLVKGCH*PWMLGLSVWKG Trigger: GCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | GTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCG | + |
Preference number: 6 (lower is better) Translates to: VRLLVKGCHWPWMLG*SVWKGLRMRITSKP Trigger: CGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 72 bp | GGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGGACTGGTCTGCCAGCT | + |
Preference number: 6 (lower is better) Translates to: GCSGCPCGRACG*GSHPSRTGLPA Trigger: AGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | CTTGCATCGAAGCTGGAGCAGAATCCCGGAGTTCTCTaGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGG | + |
Preference number: 6 (lower is better) Translates to: LASKLEQNPGVL*AAARGGQSVCW Trigger: CCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCCAGCTTCGATGCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | TGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCCAAGCCGGACTGGTCT | + |
Preference number: 6 (lower is better) Translates to: WPWMLGLSVWKG*RMRITSKPDWS Trigger: AGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | TTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTGCGGATGCGGATCACA | + |
Preference number: 6 (lower is better) Translates to: LVKGCHWPWMLG*SVWKGLRMRIT Trigger: TGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | GCGCACAGCCCCATTAAGGTATTCGGCCACTATTCGTaGCATGGCGCACGGGCGCGGGTTCACGTATACTAC | + |
Preference number: 6 (lower is better) Translates to: AHSPIKVFGHYS*HGARARVHVYY Trigger: GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACCTTAATGGGGCTGTGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 72 bp | CGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCCTCCACCGACTTGCTG | + |
Preference number: 6 (lower is better) Translates to: RITSKPDWSASF*TNDLISSTDLL Trigger: CAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS GCA 72 bp | CTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGACTTGATCTCCTCCAC | + |
Preference number: 6 (lower is better) Translates to: LADADHIQAGLV*QLLHQRLDLLH Trigger: GTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CCA 72 bp | AAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACCAACGACTTGATCTCC | + |
Preference number: 6 (lower is better) Translates to: KGLRMRITSKPD*SASFCTNDLIS Trigger: GGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | GCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACAGCCCCATTAAGGTATTCGGCCACT | + |
Preference number: 6 (lower is better) Translates to: ASFCTNDLISSTDLL*TFSSRTAPLRYSAT Trigger: AGTGGCCGAATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | ATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTGCACCAACGACTaGATCTCCTCCACCGACTTGCTGTTGACGTTTTCCTCGCGCACA | + |
Preference number: 6 (lower is better) Translates to: ITSKPDWSASFCTND*ISSTDLLLTFSSRT Trigger: TGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | AAGCCGGACTGGTCTGCCAGCTTCTGCACCAACGACTaGATCTCCTCCACCGACTTGCTGTTGACGTTTTCC | + |
Preference number: 6 (lower is better) Translates to: KPDWSASFCTND*ISSTDLLLTFS Trigger: GGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 90 bp | TGGTCTGCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTaGCTGTTGACGTTTTCCTCGCGCACAGCCCCATTAAGGTATTCG | + |
Preference number: 6 (lower is better) Translates to: WSASFCTNDLISSTD*LLTFSSRTAPLRYS Trigger: CGAATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | AGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTaGCTGTTGACGTTTTCCTCGCGCACAGCCCCATTA | + |
Preference number: 6 (lower is better) Translates to: SFCTNDLISSTD*LLTFSSRTAPL Trigger: TAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |
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CDS CAA 72 bp | TGCACCAACGACTTGATCTCCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACAGCCCCATTAAGGTAT | + |
Preference number: 6 (lower is better) Translates to: CTNDLISSTDLL*TFSSRTAPLRY Trigger: ATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097715.4 |