RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRPL43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025208

Ensembl transcript IDs: ENSMUST00000097715.4

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCTTCTTACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGACTTaGACTAAGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGCT +
Preference number: 1 (lower is better)
Translates to: IFLQMVVSHHVVAGT*TKDLWKSSRVLLPA
Trigger: AGCAGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCTTAGTTCAAGTCCCGGCAACCACATGGTGGCTCACAACCATCTGTAAGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR GCA 90 bp CTTCCTAAACTGCACACAAACACGGATATAAGGTGCCTTGCCCAATaGCATACCAGCAAGAGCAACAGGGCATCCCGTGTCCTTCAGAAG +
Preference number: 1 (lower is better)
Translates to: LPKLHTNTDIRCLAQ*HTSKSNRASRVLQK
Trigger: CTTCTGAAGGACACGGGATGCCCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR TCA 90 bp CAAGTGTTGTACACTTCTCACATCTCAGCTTGCAAGGAGGCCAATTaGATCAGAATTAGGGTATTCACAAGGTCACTGCACCTAGCTACA +
Preference number: 1 (lower is better)
Translates to: QVLYTSHISACKEAN*IRIRVFTRSLHLAT
Trigger: TGTAGCTAGGTGCAGTGACCTTGTGAATACCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAGTGTACAACACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR-3UTR TCA 90 bp CCTAAACTGCACACAAACACGGATATAAGGTGCCTTGCCCAATGCCATACCAGCTGCAAGGAGGCCAATTaGATCAGAATTAGGGTATTC +
Preference number: 2 (lower is better)
Translates to: PKLHTNTDIRCLAQCHTSCKEAN*IRIRVF
Trigger: GAATACCCTAATTCTGATTCAATTGGCCTCCTTGCA...GCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR-3UTR GCA 90 bp AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAAAACACGGATATAAGGTaGCTTGCCCAATGCCATACC +
Preference number: 2 (lower is better)
Translates to: NQMLGLKVMHYQRQAHLQNTDIR*LAQCHT
Trigger: GGTATGGCATTGGGCAAGGCACCTTATATCCGTGTT...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR-3UTR CCA 90 bp AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAAGCACCTAGCTACAAGTaGGCAAAGGAAAAGGTTCTT +
Preference number: 2 (lower is better)
Translates to: NQMLGLKVMHYQRQAHLQAPSYK*AKEKVL
Trigger: AAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGC...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR CAA 90 bp ATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTaGAAGTCATTATTATTCGTATTTCAGAAAACACGGTCCTTGTAC +
Preference number: 2 (lower is better)
Translates to: IPCPSEDSLQTLSCV*KSLLFVFQKTRSLY
Trigger: GTACAAGGACCGTGTTTTCTGAAATACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCCGGGACTTaGACTAAGGACCTTTGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGT*TKDLWKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCAAAGGTCCTTAGTTCAAGTCCCGGCAACCACATGGTGGCTCACAACCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR GCA 72 bp CTGCACACAAACACGGATATAAGGTGCCTTGCCCAATaGCATACCAGCAAGAGCAACAGGGCATCCCGTGTC +
Preference number: 3 (lower is better)
Translates to: LHTNTDIRCLAQ*HTSKSNRASRV
Trigger: GACACGGGATGCCCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR-3UTR CAA 90 bp AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGCTACTCGGCCTGAGCTaGAAATCCAAAAGAGGAACC +
Preference number: 3 (lower is better)
Translates to: SNRASRVLQKTASRLFHVLLGLS*KSKRGT
Trigger: GGTTCCTCTTTTGGATTTCAAGCTCAGGCCGAGTAG...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR GCA 72 bp CAACTTCCTAAACTGCACACAAACACGGATATAAGGTaGCTTGCCCAATGCCATACCAGCAAGAGCAACAGG +
Preference number: 3 (lower is better)
Translates to: QLPKLHTNTDIR*LAQCHTSKSNR
Trigger: CCTGTTGCTCTTGCTGGTATGGCATTGGGCAAGGCACCTTATATCCGTGTTTGTGTGCAGTTTAGGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR-3UTR CAA 90 bp AACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTGTCCTTGTACAAGTGTaGTACACTTCTCACATCTCA +
Preference number: 3 (lower is better)
Translates to: NRASRVLQKTASRLFHVFVLVQV*YTSHIS
Trigger: TGAGATGTGAGAAGTGTACAACACTTGTACAAGGAC...AAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR TCA 72 bp CTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTaGAGTCATTATTATTCGTATTTCAGAAAACACGGT +
Preference number: 3 (lower is better)
Translates to: LQKTASRLFHVF*SHYYSYFRKHG
Trigger: ACCGTGTTTTCTGAAATACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGGCCACTGGCCCTGGATaGTCGGGTTGTCCGTGTGGA +
Preference number: 4 (lower is better)
Translates to: SNRASRVLQKTASRLFHVATGPG*SGCPCG
Trigger: TCCACACGGACAACCCGAGCATCCAGGGCCAGTGGC...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGGGTGCCACTGGCCCTaGATGCTCGGGTTGTCCGTG +
Preference number: 4 (lower is better)
Translates to: TGHPVSFRRQPPDSFMCFGCHWP*MLGLSV
Trigger: CACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTC +
Preference number: 4 (lower is better)
Translates to: SNRASRVLQKTASRLFHVLLVKG*HWPWML
Trigger: GAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAA...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
3UTR CAA 72 bp CGGCTGGTAGGCTCCACCCACCTACTCGGCCTGAGCTaGAAATCCAAAAGAGGAACCAATCCTATCCCTCTC +
Preference number: 4 (lower is better)
Translates to: RLVGSTHLLGLS*KSKRGTNPIPL
Trigger: GAGAGGGATAGGATTGGTTCCTCTTTTGGATTTCAAGCTCAGGCCGAGTAGGTGGGTGGAGCCTACCAGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCA +
Preference number: 4 (lower is better)
Translates to: TGHPVSFRRQPPDSFMCFPCGRA*GCGSHP
Trigger: TGGATGTGATCCGCATCCGCAAGCCCTTCCACACGG...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTGCTTGCATCGAAGCTaGAGCAGAATCCCGGAGTTC +
Preference number: 4 (lower is better)
Translates to: SNRASRVLQKTASRLFHVCLHRS*SRIPEF
Trigger: GAACTCCGGGATTCTGCTCCAGCTTCGATGCAAGCA...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp TGTACACTTCTCACATCTCAGCTTGCAAGGAGGCCAATTGAATCAGAATTAGGGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGG +
Preference number: 4 (lower is better)
Translates to: CTLLTSQLARRPIESELGLGLSV*KGLRMR
Trigger: CCGCATCCGCAAGCCCTTCCACACGGACAACCCGAG...CCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAGTGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp ACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCC +
Preference number: 4 (lower is better)
Translates to: TGHPVSFRRQPPDSFMCFWSASF*TNDLIS
Trigger: GGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCA...AAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR TCA 90 bp CTTCTCACATCTCAGCTTGCAAGGAGGCCAATTGAATCAGAATTAGGGTATTCACAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCT +
Preference number: 4 (lower is better)
Translates to: LLTSQLARRPIESELGYSQSVCW*RGATGP
Trigger: AGGGCCAGTGGCACCCCTTCACCAACAAACGGACTG...TGAATACCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp AACCAAATGCTGGGATTAAAGGTTATGCACTACCAACGCCAGGCTCATCTTCAACAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGA +
Preference number: 4 (lower is better)
Translates to: NQMLGLKVMHYQRQAHLQQAGLV*QLLHQR
Trigger: TCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTG...TTGAAGATGAGCCTGGCGTTGGTAGTGCATAACCTTTAATCCCAGCATTTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACC +
Preference number: 4 (lower is better)
Translates to: SFLVFETGLSWNSLCRPSTSKPD*SASFCT
Trigger: GGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGT...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: SFLVFETGLSWNSLCRPSVYYDS*VPSGEV
Trigger: GACTTCGCCCGACGGAACCCAGGAGTCGTAGTATAC...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CCA 90 bp TTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGAAGTCATTATTATTCGTGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTG +
Preference number: 4 (lower is better)
Translates to: FRRQPPDSFMCFEVIIIRVKGCH*PWMLGL
Trigger: CAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCAC...ACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR GCA 90 bp TTCAGAAGACAGCCTCCAGACTCTTTCATGTGTTTTGAAGTCATTATTATTCGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGG +
Preference number: 4 (lower is better)
Translates to: FRRQPPDSFMCFEVIIIRGRACG*GSHPSR
Trigger: CCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCC...ACGAATAATAATGACTTCAAAACACATGAAAGAGTCTGGAGGCTGTCTTCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 90 bp CTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: LGRSPWRAVRLLVKG*HWPWMLGLSVWKGL
Trigger: CAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS TCA 90 bp GGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGA +
Preference number: 5 (lower is better)
Translates to: GVLWAAARGGQSVCW*RGATGPGCSGCPCG
Trigger: TCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp CGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATG +
Preference number: 5 (lower is better)
Translates to: RSPWRAVRLLVKGCH*PWMLGLSVWKGLRM
Trigger: CATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp TCGTGGCATGGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTCGGTCACCTCGCGTTCCACGAACTC +
Preference number: 5 (lower is better)
Translates to: SWHGARARVHVYYDS*VPSGEVGHLAFHEL
Trigger: GAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp CCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTaGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATGCGGATC +
Preference number: 5 (lower is better)
Translates to: PWRAVRLLVKGCHWP*MLGLSVWKGLRMRI
Trigger: GATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp ATCGAAGCTGGAGCAGAATCCCGGAGTTCTCTGGGCCGCAGCCCGTaGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: IEAGAESRSSLGRSP*RAVRLLVKGCHWPW
Trigger: CCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCCAGCTTCGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 90 bp GGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: GATGPGCSGCPCGRA*GCGSHPSRTGLPAS
Trigger: AGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 90 bp ACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTGCACCA +
Preference number: 5 (lower is better)
Translates to: TGPGCSGCPCGRACG*GSHPSRTGLPASAP
Trigger: TGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp TTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCT +
Preference number: 5 (lower is better)
Translates to: LVKGCHWPWMLGLSV*KGLRMRITSKPDWS
Trigger: AGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp TCCGTGTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGAC +
Preference number: 5 (lower is better)
Translates to: SVWKGLRMRITSKPD*SASFCTNDLISSTD
Trigger: GTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 90 bp GTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTTGCT +
Preference number: 5 (lower is better)
Translates to: VEGLADADHIQAGLV*QLLHQRLDLLHRLA
Trigger: AGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 90 bp GTTTTCCTCGCGCACAGCCCCATTAAGGTATTCGGCCACTATTCGTaGCATGGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTGG +
Preference number: 5 (lower is better)
Translates to: VFLAHSPIKVFGHYS*HGARARVHVYYDSW
Trigger: CCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACCTTAATGGGGCTGTGCGCGAGGAAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CAA 90 bp AGCAACAGGGCATCCCGTGTCCTTCAGAAGACAGCCTCCAGACTCTTTCATGTGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: SNRASRVLQKTASRLFHVPWMLG*SVWKGL
Trigger: CAAGCCCTTCCACACGGACAACCCGAGCATCCAGGG...CACATGAAAGAGTCTGGAGGCTGTCTTCTGAAGGACACGGGATGCCCTGTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 90 bp TTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCCTCCACCGACTTGCTGTTGACGTTT +
Preference number: 5 (lower is better)
Translates to: LRMRITSKPDWSASF*TNDLISSTDLLLTF
Trigger: AAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CAA 90 bp ACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCAGGCCATCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCC +
Preference number: 5 (lower is better)
Translates to: TAPSYKWAKEKVLLYLRPSVWKG*RMRITS
Trigger: GGATGTGATCCGCATCCGCAAGCCCTTCCACACGGA...TGGCCTGAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CAA 90 bp GTCACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCAGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGG +
Preference number: 5 (lower is better)
Translates to: VTAPSYKWAKEKVLLYLRRAVRL*VKGCHW
Trigger: CCAGTGGCACCCCTTCACCAACAAACGGACTGCCCT...CCTGAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CAA 90 bp AAGGTCACTGCACCTAGCTACAAGTGGGCAAAGGAAAAGGTTCTTCTTTATCTCTGGAGGGCAGTCCGTTaGTTGGTGAAGGGGTGCCAC +
Preference number: 5 (lower is better)
Translates to: KVTAPSYKWAKEKVLLYLWRAVR*LVKGCH
Trigger: GTGGCACCCCTTCACCAACAAACGGACTGCCCTCCA...GAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGTGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS-3UTR CAA 90 bp TCATTTTTAGTTTTTGAGACTGGGTTGTCCTGGAACTCACTCTGTAGACCAAGCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACA +
Preference number: 5 (lower is better)
Translates to: SFLVFETGLSWNSLCRPSSTDLL*TFSSRT
Trigger: TGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGA...GCTTGGTCTACAGAGTGAGTTCCAGGACAACCCAGTCTCAAAAACTAAAAATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp TCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGG +
Preference number: 6 (lower is better)
Translates to: SLGRSPWRAVRL*VKGCHWPWMLG
Trigger: CCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp TCCCGGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTaGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTG +
Preference number: 6 (lower is better)
Translates to: SRSSLGRSPWRAVRL*VKGCHWPWMLGLSV
Trigger: CACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS TCA 72 bp TGGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGGTaGAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGT +
Preference number: 6 (lower is better)
Translates to: WAAARGGQSVCW*RGATGPGCSGC
Trigger: ACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp GGCGCACGGGCGCGGGTTCACGTATACTACGACTCCTaGGTTCCGTCGGGCGAAGTCGGTCACCTCGCGTTC +
Preference number: 6 (lower is better)
Translates to: GARARVHVYYDS*VPSGEVGHLAF
Trigger: GAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp GAATCCCGGAGTTCTCTGGGCCGCAGCCCGTGGAGGGCAGTCCGTTaGTTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTTGTCC +
Preference number: 6 (lower is better)
Translates to: ESRSSLGRSPWRAVR*LVKGCHWPWMLGLS
Trigger: GGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 72 bp AGCCCGTGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTaGCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGG +
Preference number: 6 (lower is better)
Translates to: SPWRAVRLLVKG*HWPWMLGLSVW
Trigger: CCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp GGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTaGAAGGGCTTGCGGATGCGGATCACATCCAAGCCG +
Preference number: 6 (lower is better)
Translates to: GCHWPWMLGLSV*KGLRMRITSKP
Trigger: CGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp GGAGCAGAATCCCGGAGTTCTCTGGGCCGCAGCCCGTaGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCAC +
Preference number: 6 (lower is better)
Translates to: GAESRSSLGRSP*RAVRLLVKGCH
Trigger: GTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp GGGTGCCACTGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: GCHWPWMLGLSVWKG*RMRITSKPDWSASF
Trigger: GAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 72 bp GGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTTaGGGATGCGGATCACATCCAAGCCGGACTGGTCTG +
Preference number: 6 (lower is better)
Translates to: GPGCSGCPCGRA*GCGSHPSRTGL
Trigger: CAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp TGGAGGGCAGTCCGTTTGTTGGTGAAGGGGTGCCACTaGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGC +
Preference number: 6 (lower is better)
Translates to: WRAVRLLVKGCH*PWMLGLSVWKG
Trigger: GCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp GTCCGTTTGTTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTGCGGATGCGGATCACATCCAAGCCG +
Preference number: 6 (lower is better)
Translates to: VRLLVKGCHWPWMLG*SVWKGLRMRITSKP
Trigger: CGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 72 bp GGATGCTCGGGTTGTCCGTGTGGAAGGGCTTGCGGATaGGGATCACATCCAAGCCGGACTGGTCTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: GCSGCPCGRACG*GSHPSRTGLPA
Trigger: AGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp CTTGCATCGAAGCTGGAGCAGAATCCCGGAGTTCTCTaGGCCGCAGCCCGTGGAGGGCAGTCCGTTTGTTGG +
Preference number: 6 (lower is better)
Translates to: LASKLEQNPGVL*AAARGGQSVCW
Trigger: CCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCCAGCTTCGATGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp TGGCCCTGGATGCTCGGGTTGTCCGTGTGGAAGGGCTaGCGGATGCGGATCACATCCAAGCCGGACTGGTCT +
Preference number: 6 (lower is better)
Translates to: WPWMLGLSVWKG*RMRITSKPDWS
Trigger: AGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp TTGGTGAAGGGGTGCCACTGGCCCTGGATGCTCGGGTaGTCCGTGTGGAAGGGCTTGCGGATGCGGATCACA +
Preference number: 6 (lower is better)
Translates to: LVKGCHWPWMLG*SVWKGLRMRIT
Trigger: TGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp GCGCACAGCCCCATTAAGGTATTCGGCCACTATTCGTaGCATGGCGCACGGGCGCGGGTTCACGTATACTAC +
Preference number: 6 (lower is better)
Translates to: AHSPIKVFGHYS*HGARARVHVYY
Trigger: GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACCTTAATGGGGCTGTGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 72 bp CGGATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTaGACCAACGACTTGATCTCCTCCACCGACTTGCTG +
Preference number: 6 (lower is better)
Translates to: RITSKPDWSASF*TNDLISSTDLL
Trigger: CAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS GCA 72 bp CTTGCGGATGCGGATCACATCCAAGCCGGACTGGTCTaGCAGCTTCTGCACCAACGACTTGATCTCCTCCAC +
Preference number: 6 (lower is better)
Translates to: LADADHIQAGLV*QLLHQRLDLLH
Trigger: GTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CCA 72 bp AAGGGCTTGCGGATGCGGATCACATCCAAGCCGGACTaGTCTGCCAGCTTCTGCACCAACGACTTGATCTCC +
Preference number: 6 (lower is better)
Translates to: KGLRMRITSKPD*SASFCTNDLIS
Trigger: GGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp GCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACAGCCCCATTAAGGTATTCGGCCACT +
Preference number: 6 (lower is better)
Translates to: ASFCTNDLISSTDLL*TFSSRTAPLRYSAT
Trigger: AGTGGCCGAATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp ATCACATCCAAGCCGGACTGGTCTGCCAGCTTCTGCACCAACGACTaGATCTCCTCCACCGACTTGCTGTTGACGTTTTCCTCGCGCACA +
Preference number: 6 (lower is better)
Translates to: ITSKPDWSASFCTND*ISSTDLLLTFSSRT
Trigger: TGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp AAGCCGGACTGGTCTGCCAGCTTCTGCACCAACGACTaGATCTCCTCCACCGACTTGCTGTTGACGTTTTCC +
Preference number: 6 (lower is better)
Translates to: KPDWSASFCTND*ISSTDLLLTFS
Trigger: GGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 90 bp TGGTCTGCCAGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTaGCTGTTGACGTTTTCCTCGCGCACAGCCCCATTAAGGTATTCG +
Preference number: 6 (lower is better)
Translates to: WSASFCTNDLISSTD*LLTFSSRTAPLRYS
Trigger: CGAATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp AGCTTCTGCACCAACGACTTGATCTCCTCCACCGACTaGCTGTTGACGTTTTCCTCGCGCACAGCCCCATTA +
Preference number: 6 (lower is better)
Translates to: SFCTNDLISSTD*LLTFSSRTAPL
Trigger: TAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4
CDS CAA 72 bp TGCACCAACGACTTGATCTCCTCCACCGACTTGCTGTaGACGTTTTCCTCGCGCACAGCCCCATTAAGGTAT +
Preference number: 6 (lower is better)
Translates to: CTNDLISSTDLL*TFSSRTAPLRY
Trigger: ATACCTTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097715.4