Pregenerated sensors for MRPL42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062981Ensembl transcript IDs: ENSMUST00000075829.3, ENSMUST00000217777.2, ENSMUST00000218893.2, ENSMUST00000219019.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGTGCAGAAGATCTGGTTaGGGGATGGGCAGAGCACCT | + |
|
Preference number: 2 (lower is better) Translates to: LANKTQSKISRCPGNHESCRRSG*GMGRAP Trigger: AGGTGCTCTGCCCATCCCTCAACCAGATCTTCTGCA...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| 3UTR-3UTR GCA 90 bp | GATGTCCGGGGAATCATGAGTCGTCATCTGTCTCTGGGAGGATTCAGTTTCTTAGGCCCTTGCTCCAGCTaGTTGCTCTTTCTAACTTCT | + |
|
Preference number: 2 (lower is better) Translates to: DVRGIMSRHLSLGGFSFLGPCSS*LLFLTS Trigger: AGAAGTTAGAAAGAGCAAGCAGCTGGAGCAAGGGCC...TAAGAAACTGAATCCTCCCAGAGACAGATGACGACTCATGATTCCCCGGACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| 3UTR-3UTR GCA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGTGGTGTAGAACACCTTaGTCAGTTGTTCTATCATGG | + |
|
Preference number: 2 (lower is better) Translates to: LANKTQSKISRCPGNHESWCRTP*SVVLSW Trigger: CCATGATAGAACAACTGAGCAAGGTGTTCTACACCA...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| 3UTR TCA 72 bp | CTGTCTCTGGGAGGATTCAGTTTCTTACGACGATTGTaGTACTGTCCGTGCGGGTACCAGCGATGCTTCGTG | + |
|
Preference number: 3 (lower is better) Translates to: LSLGGFSFLRRL*YCPCGYQRCFV Trigger: CACGAAGCATCGCTGGTACCCGCACGGACAGTATCACAATCGTCGTAAGAAACTGAATCCTCCCAGAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| 3UTR TCA 72 bp | GACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATaGGTCGTCATCTGTCTCTGGGAGGATTCAGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: DTKQNFPMSGES*VVICLWEDSVS Trigger: AGAAACTGAATCCTCCCAGAGACAGATGACGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| CDS-3UTR CCA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGGTTGAGGGATGGGTTTaGTGTGTTCGTAGGGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: LANKTQSKISRCPGNHESVEGWV*CVRRGC Trigger: ACATCCCCTACGAACACACCAAACCCATCCCTCAAC...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR TCA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATTGCAGAAGATCTGGTTaGGGGATGGGTTTGGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SQLANKTQSKISRCPGNHCRRSG*GMGLVC Trigger: ACACACCAAACCCATCCCTCAACCAGATCTTCTGCA...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR TCA 90 bp | AGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTTGCAGAAGATCTGGTTaGGGGATGGGTTTGGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SWQIRHKAKFPDVRGIMSCRRSG*GMGLVC Trigger: ACACACCAAACCCATCCCTCAACCAGATCTTCTGCA...ACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGGCCCTTGCTCCAGCTaGTTGCTCTTTCTAACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQLANKTQSKISRCPGNHGPCSS*LLFLTS Trigger: AGAAGTTAGAAAGAGCAAGCAGCTGGAGCAAGGGCC...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR TCA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGGAGTATGTGGATTTGTaGCAAGCACTAGACAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LANKTQSKISRCPGNHESEYVDL*QALDKA Trigger: AGCTTTGTCTAGTGCTTGTCACAAATCCACATACTC...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR TCA 90 bp | TGCTTGCTCTTTCTAACTTCTAACTTGGCTTTCAGGATCTGCTCGTGGGTTTCCGAGTATGTGGATTTGTaGCAAGCACTAGACAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: CLLFLTSNLAFRICSWVSEYVDL*QALDKA Trigger: AGCTTTGTCTAGTGCTTGTCACAAATCCACATACTC...GGAAACCCACGAGCAGATCCTGAAAGCCAAGTTAGAAGTTAGAAAGAGCAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| CDS-3UTR CCA 90 bp | CAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGATTATGCAGAAGATCTaGTTGAGGGATGGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: QLANKTQSKISRCPGNHEIMQKI*LRDGFG Trigger: ACCAAACCCATCCCTCAACCAGATCTTCTGCATAAT...CTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | TTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTGGGCCCTTGCTCCAGCTaGTTGCTCTTTCTAACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FSYIPTTLMMVPCTFSQLGPCSS*LLFLTS Trigger: AGAAGTTAGAAAGAGCAAGCAGCTGGAGCAAGGGCC...CAGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | AGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTTGGTGTAGAACACCTTaGTCAGTTGTTCTATCATGG | + |
|
Preference number: 4 (lower is better) Translates to: SWQIRHKAKFPDVRGIMSWCRTP*SVVLSW Trigger: CCATGATAGAACAACTGAGCAAGGTGTTCTACACCA...ACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | CAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTGGATTGGAAGTAAATaGTTCCAGATAGTTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: QLANKTQSKISRCPGNHEWIGSK*FQIVLF Trigger: AAACAGAACTATCTGGAAGCATTTACTTCCAATCCA...CTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR GCA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGTGGATTGGAAGTAAATaGTTCCAGATAGTTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LANKTQSKISRCPGNHESWIGSK*FQIVLF Trigger: AAACAGAACTATCTGGAAGCATTTACTTCCAATCCA...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR GCA 90 bp | TTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTGTTGGCTTTCAGGATCTaGTCGTGGGTTTCCTCATTA | + |
|
Preference number: 4 (lower is better) Translates to: FSYIPTTLMMVPCTFSQLLAFRI*SWVSSL Trigger: TAATGAGGAAACCCACGAGCAGATCCTGAAAGCCAA...CAGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | TGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGTTGGATTGGAAGTAAATaGTTCCAGATAGTTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: WQIRHKAKFPDVRGIMSRWIGSK*FQIVLF Trigger: AAACAGAACTATCTGGAAGCATTTACTTCCAATCCA...ACGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000217777.2 ENSMUST00000219019.2 |
||
| CDS-3UTR GCA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTTTGGCTTTCAGGATCTaGTCGTGGGTTTCCTCATTA | + |
|
Preference number: 4 (lower is better) Translates to: FFLYTDHLNDGTMYIFSALAFRI*SWVSSL Trigger: TAATGAGGAAACCCACGAGCAGATCCTGAAAGCCAA...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR GCA 90 bp | TTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTGTGGTGTAGAACACCTTaGTCAGTTGTTCTATCATGG | + |
|
Preference number: 4 (lower is better) Translates to: FSYIPTTLMMVPCTFSQLWCRTP*SVVLSW Trigger: CCATGATAGAACAACTGAGCAAGGTGTTCTACACCA...CAGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR TCA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTGAGTATGTGGATTTGTaGCAAGCACTAGACAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FFLYTDHLNDGTMYIFSAEYVDL*QALDKA Trigger: AGCTTTGTCTAGTGCTTGTCACAAATCCACATACTC...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR CCA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTATTATGCAGAAGATCTaGTTGAGGGATGGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FFLYTDHLNDGTMYIFSAIMQKI*LRDGFG Trigger: ACCAAACCCATCCCTCAACCAGATCTTCTGCATAAT...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGGTGGTAGCACACTATaGTCCTGCCGTCGGCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SQLANKTQSKISRCPGNHGGSTL*SCRRLS Trigger: TGACAGCCGACGGCAGGACAATAGTGTGCTACCACC...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR CAA 90 bp | AGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTGGTGGTAGCACACTATaGTCCTGCCGTCGGCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SWQIRHKAKFPDVRGIMSGGSTL*SCRRLS Trigger: TGACAGCCGACGGCAGGACAATAGTGTGCTACCACC...ACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR CAA 90 bp | CTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTCGATGCAGAAGATCTGGTaGAGGGATGGGTTTGGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: LANKTQSKISRCPGNHESMQKIW*RDGFGV Trigger: CACACCAAACCCATCCCTCAACCAGATCTTCTGCAT...CGACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATTTCTATCATGGGCCCTaGCTCCAGCTGCTTGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: SQLANKTQSKISRCPGNHFYHGP*LQLLAL Trigger: AAGAGCAAGCAGCTGGAGCAAGGGCCCATGATAGAA...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | CAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGGAACACCTTGCTCAGTaGTTCTATCATGGGCCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: QLANKTQSKISRCPGNHEEHLAQ*FYHGPL Trigger: CAAGGGCCCATGATAGAACAACTGAGCAAGGTGTTC...CTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | CTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGCCTTGCTCCAGCTGCTaGCTCTTTCTAACTTCTAAC | + |
|
Preference number: 5 (lower is better) Translates to: LSWQIRHKAKFPDVRGIMPCSSC*LFLTSN Trigger: GTTAGAAGTTAGAAAGAGCAAGCAGCTGGAGCAAGG...CATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAACACCTTGCTCAGTaGTTCTATCATGGGCCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: SQLANKTQSKISRCPGNHEHLAQ*FYHGPL Trigger: CAAGGGCCCATGATAGAACAACTGAGCAAGGTGTTC...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TCTCAGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATAAGCTCCGTTTTGGATaGGAAGTAAATGCTTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SQLANKTQSKISRCPGNHKLRFG*EVNASR Trigger: TCTGGAAGCATTTACTTCCAATCCAAAACGGAGCTT...ATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000075829.3 ENSMUST00000217777.2 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||
| CDS-3UTR CAA 90 bp | AGCTGGCAAATAAGACACAAAGCAAAATTTCCCGATGTCCGGGGAATCATGAGTTTTCTAACTTCTAACTaGGCTTTCAGGATCTGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: SWQIRHKAKFPDVRGIMSFLTSN*AFRICS Trigger: CGAGCAGATCCTGAAAGCCAAGTTAGAAGTTAGAAA...ACTCATGATTCCCCGGACATCGGGAAATTTTGCTTTGTGTCTTATTTGCCAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTTTCTATCATGGGCCCTaGCTCCAGCTGCTTGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FFLYTDHLNDGTMYIFSAFYHGP*LQLLAL Trigger: AAGAGCAAGCAGCTGGAGCAAGGGCCCATGATAGAA...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TCTAACTTGGCTTTCAGGATCTGCTCGTGGGTTTCCTCATTATTATGCAGAAGAAAGCTCCGTTTTGGATaGGAAGTAAATGCTTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SNLAFRICSWVSSLLCRRKLRFG*EVNASR Trigger: TCTGGAAGCATTTACTTCCAATCCAAAACGGAGCTT...TCTTCTGCATAATAATGAGGAAACCCACGAGCAGATCCTGAAAGCCAAGTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219019.2 |
||
| CDS-3UTR CAA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTATGCAGAAGATCTGGTaGAGGGATGGGTTTGGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: FFLYTDHLNDGTMYIFSAMQKIW*RDGFGV Trigger: CACACCAAACCCATCCCTCAACCAGATCTTCTGCAT...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTGGCTTTCTAACTTCTAACTaGGCTTTCAGGATCTGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: FLYTDHLNDGTMYIFSAGFLTSN*AFRICS Trigger: CGAGCAGATCCTGAAAGCCAAGTTAGAAGTTAGAAA...GCCAGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 |
||
| CDS-3UTR CAA 90 bp | TTTTTCCTATATACCGACCACCTTAATGATGGTACCATGTACATTTTCTCAGCTAAGCTCCGTTTTGGATaGGAAGTAAATGCTTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: FFLYTDHLNDGTMYIFSAKLRFG*EVNASR Trigger: TCTGGAAGCATTTACTTCCAATCCAAAACGGAGCTT...AGCTGAGAAAATGTACATGGTACCATCATTAAGGTGGTCGGTATATAGGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000075829.3 ENSMUST00000218893.2 ENSMUST00000219019.2 |
||