Pregenerated sensors for MRPL41 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036850Ensembl transcript IDs: ENSMUST00000045604.4, ENSMUST00000194392.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTCTTTGCGTGGTCCCCGCTTaGTTGTCCACTTGCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: WSVLSPLCRQTFGLSHGLCVVPA*LSTCSS Trigger: GGATGAGCAAGTGGACAAGCAAGCGGGGACCACGCA...AAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CCA 90 bp | GCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTGCTTGCCTTCCTGTGTaGGCTCGAAGCCGTATTTCT | + |
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Preference number: 4 (lower is better) Translates to: AWSVLSPLCRQTFGLSHGACLPV*ARSRIS Trigger: AGAAATACGGCTTCGAGCCCACACAGGAAGGCAAGC...ACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR GCA 90 bp | TGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTCTTATAATTGGAACAGCTTaGCTTCCTGTGTGGGCTCGA | + |
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Preference number: 4 (lower is better) Translates to: WSVLSPLCRQTFGLSHGLIIGTA*LPVWAR Trigger: TCGAGCCCACACAGGAAGGCAAGCTGTTCCAATTAT...AAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CCA 90 bp | AATAAGAATCCAAGGCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGGTGCAACTGTTTCCTaGAAGAGCGCTTTGGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: NKNPRLGQYCLHFVDKLLGATVS*KSALAV Trigger: GACCGCCAAAGCGCTCTTCCAGGAAACAGTTGCACC...CAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGGATTCTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR GCA 90 bp | AAGAATCCAAGGCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTATCAGAAGTATAGATaGCTGTTTTCTTGGCACCCC | + |
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Preference number: 4 (lower is better) Translates to: KNPRLGQYCLHFVDKLLAYQKYR*LFSWHP Trigger: GGGGTGCCAAGAAAACAGGCATCTATACTTCTGATA...GGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGGATTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CCA 90 bp | CCAAGGCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCTTCTTAGGATATAATTaGAACAGCTTGCCTTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: PRLGQYCLHFVDKLLASLFLGYN*NSLPSC Trigger: ACAGGAAGGCAAGCTGTTCCAATTATATCCTAAGAA...GAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS CCA 90 bp | CGGCAGTCAGGAAACCCATGCTGGGCTCTGGATAAATCAGCTCTGTaGGAGCCGAAGATACGAGAAGCCACGGGCGCAGAGGACCGGCCC | + |
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Preference number: 5 (lower is better) Translates to: RQSGNPCWALDKSAL*EPKIREATGAEDRP Trigger: GGGCCGGTCCTCTGCGCCCGTGGCTTCTCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS GCA 90 bp | CAGCTCCCCGCACCAGGCCTTGAGTCACGGCAGTCAGGAAACCCATaGTGGGCTCTGGATAAATCAGCTCTGTGGGAGCCGAAGATACGA | + |
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Preference number: 5 (lower is better) Translates to: QLPAPGLESRQSGNP*WALDKSALWEPKIR Trigger: TCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS CCA 90 bp | CACCAGGCCTTGAGTCACGGCAGTCAGGAAACCCATGCTGGGCTCTaGATAAATCAGCTCTGTGGGAGCCGAAGATACGAGAAGCCACGG | + |
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Preference number: 5 (lower is better) Translates to: HQALSHGSQETHAGL*INQLCGSRRYEKPR Trigger: CCGTGGCTTCTCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS CCA 90 bp | CTCCCCGCACCAGGCCTTGAGTCACGGCAGTCAGGAAACCCATGCTaGGCTCTGGATAAATCAGCTCTGTGGGAGCCGAAGATACGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LPAPGLESRQSGNPC*ALDKSALWEPKIRE Trigger: TTCTCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS GCA 90 bp | TGTTTCCTGGAAGAGCGCTTTGGCGGTCAGAGGTGTGTCTATGCCTaGAGGAGCTCGGTAATTAACGTAGGGCTTGAGCTTGAAGCCCGT | + |
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Preference number: 5 (lower is better) Translates to: CFLEERFGGQRCVYA*RSSVINVGLELEAR Trigger: ACGGGCTTCAAGCTCAAGCCCTACGTTAATTACCGAGCTCCTGCAGGCATAGACACACCTCTGACCGCCAAAGCGCTCTTCCAGGAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CAA 90 bp | AAGAATCCAAGGCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCGTGCGTGGTCCCCGCTaGCTTGTCCACTTGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: KNPRLGQYCLHFVDKLLAVRGPR*LVHLLI Trigger: GATGAGCAAGTGGACAAGCAAGCGGGGACCACGCAC...GGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGGATTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CAA 90 bp | TGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTCTTGTGGTCCCCGCTTGCTaGTCCACTTGCTCATCCTGT | + |
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Preference number: 5 (lower is better) Translates to: WSVLSPLCRQTFGLSHGLVVPAC*STCSSC Trigger: ACAGGATGAGCAAGTGGACAAGCAAGCGGGGACCAC...AAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS GCA 90 bp | GTTAGCATCAAATGTCCCTTCTTTAAAGTCTTTTTCGATAGCGGGTaGAACTGTTTCCTGGAAGAGCGCTTTGGCGGTCAGAGGTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: VSIKCPFFKVFFDSG*NCFLEERFGGQRCV Trigger: GACACACCTCTGACCGCCAAAGCGCTCTTCCAGGAAACAGTTGCACCCGCTATCGAAAAAGACTTTAAAGAAGGGACATTTGATGCTAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CAA 90 bp | TGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTCTTTATAATTGGAACAGCTaGCCTTCCTGTGTGGGCTCG | + |
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Preference number: 5 (lower is better) Translates to: WSVLSPLCRQTFGLSHGLYNWNS*PSCVGS Trigger: CGAGCCCACACAGGAAGGCAAGCTGTTCCAATTATA...AAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS-3UTR CAA 90 bp | GCTTGGTCAGTACTGTCTCCACTTTGTAGACAAACTTTTGGCCTCTCTCATGGTCCGTATTTCTCCAGGTaGTTAGCATCAAATGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: AWSVLSPLCRQTFGLSHGPYFSR*LASNVP Trigger: AGGGACATTTGATGCTAACAACCTGGAGAAATACGG...ACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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| CDS TCA 72 bp | CACTTGCTCATCCTGTCAGCTCCCCGCACCAGGCCTTaGGTCACGGCAGTCAGGAAACCCATGCTGGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: HLLILSAPRTRP*VTAVRKPMLGS Trigger: AGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAGCTGACAGGATGAGCAAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS GCA 72 bp | GCACCAGGCCTTGAGTCACGGCAGTCAGGAAACCCATaGTGGGCTCTGGATAAATCAGCTCTGTGGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: APGLESRQSGNP*WALDKSALWEP Trigger: CGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS CCA 72 bp | GGAAACCCATGCTGGGCTCTGGATAAATCAGCTCTGTaGGAGCCGAAGATACGAGAAGCCACGGGCGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GNPCWALDKSAL*EPKIREATGAE Trigger: CTCTGCGCCCGTGGCTTCTCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS CCA 72 bp | CCAGGCCTTGAGTCACGGCAGTCAGGAAACCCATGCTaGGCTCTGGATAAATCAGCTCTGTGGGAGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: PGLESRQSGNPC*ALDKSALWEPK Trigger: CTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS CCA 72 bp | TTGAGTCACGGCAGTCAGGAAACCCATGCTGGGCTCTaGATAAATCAGCTCTGTGGGAGCCGAAGATACGAG | + |
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Preference number: 6 (lower is better) Translates to: LSHGSQETHAGL*INQLCGSRRYE Trigger: CTCGTATCTTCGGCTCCCACAGAGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194392.2 |
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| CDS GCA 72 bp | AAATGTCCCTTCTTTAAAGTCTTTTTCGATAGCGGGTaGAACTGTTTCCTGGAAGAGCGCTTTGGCGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: KCPFFKVFFDSG*NCFLEERFGGQ Trigger: CTGACCGCCAAAGCGCTCTTCCAGGAAACAGTTGCACCCGCTATCGAAAAAGACTTTAAAGAAGGGACATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045604.4 |
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