Pregenerated sensors for MRPL40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022706Ensembl transcript IDs: ENSMUST00000023391.16, ENSMUST00000119273.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGTCTGGTGGGTGTGTCTaGCGTGTGCCTGGCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQSGGCV*RVPGRF Trigger: GAACCTGCCAGGCACACGTCAGACACACCCACCAGA...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS-3UTR CCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGTCCAGGGCTTCCTGCTaGGCTTCTAGCATGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQSRASC*ASSMDL Trigger: CAGATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGA...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR TCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGCGATCCTTTGCTGCTTaGTCCTTTCTGGGGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQRSFAA*SFLGST Trigger: GGTAGACCCCAGAAAGGATCAAGCAGCAAAGGATCG...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR TCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGCTTCTAGCATGGATCTaGTGGCGTCCCTCTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQLLAWI*WRPSPS Trigger: AGATGGAGAGGGACGCCATCAGATCCATGCTAGAAG...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR GCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGCTTCCGCAGAGGTTCTaGTCTCATGGGGATGAGATC | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQLPQRF*SHGDEI Trigger: GATCTCATCCCCATGAGAGCAGAACCTCTGCGGAAG...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS-3UTR TCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACTGCTCTCATGGGGATaGGATCCCAGAAGGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGLLSWG*DPRRPV Trigger: TACTGGCCTTCTGGGATCTCATCCCCATGAGAGCAG...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS-3UTR GCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGCTGCTGCTTAAACAGTaGCCACCTCTTCAGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQLLLKQ*PPLQQK Trigger: CTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAG...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR GCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGATCCTCCAGGGCTTCCTaGTGGGCTTCTAGCATGGAT | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGSSRAS*WASSMD Trigger: ATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGAGGA...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR GCA 90 bp | TGGAAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCATCCTCCAGGGCTTCCTaGTGGGCTTCTAGCATGGAT | + |
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Preference number: 4 (lower is better) Translates to: WKVDFRSLLQTPRASMFPSSRAS*WASSMD Trigger: ATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGAGGA...TGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGAGTAAGGAAGCTCTCTaGTGGGTGTGTCTGACGTGT | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQSKEAL*WVCLTC Trigger: ACACGTCAGACACACCCACCAGAGAGCTTCCTTACT...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS-3UTR CCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGATCCAGGGCTTCCTGCTaGGCTTCTAGCATGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGSRASC*ASSMDL Trigger: CAGATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGA...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGAGGTGGTGTGTAATGTaGCCCTTCTTTCTCGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQRWCVM*PFFLEG Trigger: CCCTTCGAGAAAGAAGGGCCACATTACACACCACCT...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR TCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACGATCCTTTGCTGCTTaGTCCTTTCTGGGGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGRSFAA*SFLGST Trigger: GGTAGACCCCAGAAAGGATCAAGCAGCAAAGGATCG...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR TCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACTTCTAGCATGGATCTaGTGGCGTCCCTCTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGLLAWI*WRPSPS Trigger: AGATGGAGAGGGACGCCATCAGATCCATGCTAGAAG...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR GCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACTGCTGCTTAAACAGTaGCCACCTCTTCAGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGLLLKQ*PPLQQK Trigger: CTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAG...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | TGGAAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAAGGTGGTGTGTAATGTaGCCCTTCTTTCTCGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: WKVDFRSLLQTPRASMFPRWCVM*PFFLEG Trigger: CCCTTCGAGAAAGAAGGGCCACATTACACACCACCT...TGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR TCA 90 bp | TGGAAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCACTGAGGTCGCTGTCTTaGTTTATCCAAGAACCTCAC | + |
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Preference number: 4 (lower is better) Translates to: WKVDFRSLLQTPRASMFPLRSLS*FIQEPH Trigger: GTGAGGTTCTTGGATAAATCAAGACAGCGACCTCAG...TGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | TGGAAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGTAGTTAGAGATAGGTaGTGTGTAATGTGGCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: WKVDFRSLLQTPRASMFPVVRDR*CVMWPF Trigger: GAAGGGCCACATTACACACCACCTATCTCTAACTAC...TGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGAGTAGTTAGAGATAGGTaGTGTGTAATGTGGCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGVVRDR*CVMWPF Trigger: GAAGGGCCACATTACACACCACCTATCTCTAACTAC...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGATAGGAATCAGTTCTTaGGAGGCTTTTTCCAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: VDFRSLLQTPRASMFPGQIGISS*EAFSSF Trigger: AAAACTGGAAAAAGCCTCCCAAGAACTGATTCCTAT...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CCA 90 bp | AAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGAATAGGAATCAGTTCTTaGGAGGCTTTTTCCAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KVDFRSLLQTPRASMFPGIGISS*EAFSSF Trigger: AAAACTGGAAAAAGCCTCCCAAGAACTGATTCCTAT...TCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS CCA 90 bp | AAGGCCAGTAAGGAAGCTCTCTGGTGGGTGTGTCTGACGTGTGCCTaGCAGGTTCCAGGGATCCAGCTCCGAGGCCGCAGAGCCCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: KASKEALWWVCLTCA*QVPGIQLRGRRARA Trigger: TGCGCGGGCTCTGCGGCCTCGGAGCTGGATCCCTGGAACCTGCCAGGCACACGTCAGACACACCCACCAGAGAGCTTCCTTACTGGCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS GCA 90 bp | GCTTCTAGCATGGATCTGATGGCGTCCCTCTCCATCTCATGCTCCTaGTGCTTAAACAGTGCCCACCTCTTCAGCAGAAGAGCTCTCCGT | + |
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Preference number: 5 (lower is better) Translates to: ASSMDLMASLSISCS*CLNSAHLFSRRALR Trigger: ACGGAGAGCTCTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTAGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS GCA 90 bp | TGCTGGGCTTCTAGCATGGATCTGATGGCGTCCCTCTCCATCTCATaGTCCTGCTGCTTAAACAGTGCCCACCTCTTCAGCAGAAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: CWASSMDLMASLSIS*SCCLNSAHLFSRRA Trigger: AGCTCTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTAGAAGCCCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS GCA 90 bp | TCTAGCATGGATCTGATGGCGTCCCTCTCCATCTCATGCTCCTGCTaGTTAAACAGTGCCCACCTCTTCAGCAGAAGAGCTCTCCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: SSMDLMASLSISCSC*LNSAHLFSRRALRS Trigger: TGAACGGAGAGCTCTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CAA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGCCTGAGGTCGCTGTCTaGATTTATCCAAGAACCTCA | + |
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Preference number: 5 (lower is better) Translates to: VDFRSLLQTPRASMFPGQPEVAV*IYPRTS Trigger: TGAGGTTCTTGGATAAATCAAGACAGCGACCTCAGG...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CAA 90 bp | GTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAGGACAGAATAGGAATCAGTTCTaGGGAGGCTTTTTCCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: VDFRSLLQTPRASMFPGQNRNQF*GGFFQF Trigger: AAACTGGAAAAAGCCTCCCAAGAACTGATTCCTATT...CTGTCCTGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS-3UTR CAA 90 bp | TGGAAAGTAGACTTTAGATCTCTACTCCAGACTCCTAGGGCCAGCATGTTCCCAAATAGGAATCAGTTCTaGGGAGGCTTTTTCCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: WKVDFRSLLQTPRASMFPNRNQF*GGFFQF Trigger: AAACTGGAAAAAGCCTCCCAAGAACTGATTCCTATT...TGGGAACATGCTGGCCCTAGGAGTCTGGAGTAGAGATCTAAAGTCTACTTTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS TCA 72 bp | AGAAGGCCAGTAAGGAAGCTCTCTGGTGGGTGTGTCTaGCGTGTGCCTGGCAGGTTCCAGGGATCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RRPVRKLSGGCV*RVPGRFQGSSS Trigger: GGAGCTGGATCCCTGGAACCTGCCAGGCACACGTCAGACACACCCACCAGAGAGCTTCCTTACTGGCCTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023391.16 |
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| CDS TCA 72 bp | CCTCCAGGGCTTCCTGCTGGGCTTCTAGCATGGATCTaGTGGCGTCCCTCTCCATCTCATGCTCCTGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PPGLPAGLLAWI*WRPSPSHAPAA Trigger: AGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS CCA 72 bp | GCAGATTCAAGTTTCAGCTCCTCCAGGGCTTCCTGCTaGGCTTCTAGCATGGATCTGATGGCGTCCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: ADSSFSSSRASC*ASSMDLMASLS Trigger: GGAGAGGGACGCCATCAGATCCATGCTAGAAGCCCAGCAGGAAGCCCTGGAGGAGCTGAAACTTGAATCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS GCA 72 bp | GCTGGTATCCCGCTTTATGGCCTCGGCATAGAGCTCTaGAGATTCAAGTTTCAGCTCCTCCAGGGCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: AGIPLYGLGIEL*RFKFQLLQGFL Trigger: CAGGAAGCCCTGGAGGAGCTGAAACTTGAATCTGCAGAGCTCTATGCCGAGGCCATAAAGCGGGATACCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS GCA 72 bp | GATCTGATGGCGTCCCTCTCCATCTCATGCTCCTGCTaGTTAAACAGTGCCCACCTCTTCAGCAGAAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: DLMASLSISCSC*LNSAHLFSRRA Trigger: AGCTCTTCTGCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS GCA 72 bp | TCTAGCATGGATCTGATGGCGTCCCTCTCCATCTCATaGTCCTGCTGCTTAAACAGTGCCCACCTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SSMDLMASLSIS*SCCLNSAHLFS Trigger: GCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS CCA 72 bp | TGTAATGTGGCCCTTCTTTCTCGAAGGGGAATAGGCTaGTATCCCGCTTTATGGCCTCGGCATAGAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: CNVALLSRRGIG*YPALWPRHRAL Trigger: CAGAGCTCTATGCCGAGGCCATAAAGCGGGATACCAGCCTATTCCCCTTCGAGAAAGAAGGGCCACATTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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| CDS TCA 72 bp | TTTCGGATCCTCTTTTTCAAGCGATCCTTTGCTGCTTaGTCCTTTCTGGGGTCTACCTTCTTCTTCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: FRILFFKRSFAA*SFLGSTFFFFR Trigger: GCGGAAGAAGAAGAAGGTAGACCCCAGAAAGGATCAAGCAGCAAAGGATCGCTTGAAAAAGAGGATCCGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023391.16 ENSMUST00000119273.2 |
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