Pregenerated sensors for MRPL39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022889Ensembl transcript IDs: ENSMUST00000116584.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCAAACTGGCGCACACACAGTGTATTTTCCCATGTGTCTATCCATaGGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: PKLAHTQCIFPCVYP*GGGAWTSLKSVSAE Trigger: CTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCCCATGGATAGACACATGGGAAAATACACTGTGTGTGCGCCAGTTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR CCA 90 bp | ACACAGTGTATTTTCCCATGTGTCTATCCATGGGGAGGAGGCGCATaGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACAC | + |
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Preference number: 1 (lower is better) Translates to: TQCIFPCVYPWGGGA*TSLKSVSAEQGQTH Trigger: GTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCCCATGGATAGACACATGGGAAAATACACTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR CCA 90 bp | TTCGAACATGGATGTTTACTAGAGCACTCTTTAAACAGCCCAAACTaGCGCACACACAGTGTATTTTCCCATGTGTCTATCCATGGGGAG | + |
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Preference number: 1 (lower is better) Translates to: FEHGCLLEHSLNSPN*RTHSVFSHVSIHGE Trigger: CTCCCCATGGATAGACACATGGGAAAATACACTGTGTGTGCGCCAGTTTGGGCTGTTTAAAGAGTGCTCTAGTAAACATCCATGTTCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR CAA 90 bp | CCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTaGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACAC | + |
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Preference number: 2 (lower is better) Translates to: PGIPAGGSTCESRAA*VRSPALSMVMKQKH Trigger: GTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGAACAGCATCGCCCATCTaGAAACACATTATTTCGAAC | + |
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Preference number: 2 (lower is better) Translates to: PGIPAGGSTCESRAALVRTASPI*KHIISN Trigger: GTTCGAAATAATGTGTTTGCAGATGGGCGATGCTGT...TCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR-3UTR CCA 90 bp | AAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTTAAACAGCCCAAACTaGCGCACACACAGTGTATTT | + |
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Preference number: 2 (lower is better) Translates to: KLIQVSLRAAAPVRVEQPLNSPN*RTHSVF Trigger: AAATACACTGTGTGTGCGCCAGTTTGGGCTGTTTAA...AGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGAACATTATTTCGAACATaGATGTTTACTAGAGCACTC | + |
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Preference number: 2 (lower is better) Translates to: PGIPAGGSTCESRAALVRTLFRT*MFTRAL Trigger: GAGTGCTCTAGTAAACATCCATGTTCGAAATAATGT...TCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR GCA 72 bp | GGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTaGAGAGCAGGGACAAACACACATTGTATTAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: GRRRMDLLKVCI*RAGTNTHCIKS Trigger: GCTTTTAATACAATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| 3UTR CCA 72 bp | CAGCATCGCCCATCTGCAAACACATTATTTCGAACATaGATGTTTACTAGAGCACTCTTTAAACAGCCCAAA | + |
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Preference number: 3 (lower is better) Translates to: QHRPSANTLFRT*MFTRALFKQPK Trigger: TTTGGGCTGTTTAAAGAGTGCTCTAGTAAACATCCATGTTCGAAATAATGTGTTTGCAGATGGGCGATGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | GCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGATCACCTGCACTCGTGCTCTCAAGTGCGTaGGTAAAGACAGGCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: AGGSTCESRAALVRSPALVLSSA*VKTGPE Trigger: TTCAGGGCCTGTCTTTACCCACGCACTTGAGAGCAC...GAGTGCAGGTGATCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | GCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGATCACCTGCACTCATTCTCTCGGGGTTCTaGGATGCCTTCTCCTCTATG | + |
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Preference number: 4 (lower is better) Translates to: AGGSTCESRAALVRSPALILSGF*DAFSSM Trigger: CATAGAGGAGAAGGCATCTCAGAACCCCGAGAGAAT...GAGTGCAGGTGATCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | GGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACTTTCTGTCAGCTCCGTaGGTGACAGCTCGGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRRRMDLLKVCICRAGTNFLSAP*VTARQL Trigger: CAGCTGCCGAGCTGTCACCCACGGAGCTGACAGAAA...GTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | GCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGATCACCTGCACTCCATGGGCATCTTTTGTaGAAGAACGCAGGTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: AGGSTCESRAALVRSPALHGHLL*KNAGSL Trigger: AAGAGAACCTGCGTTCTTTCACAAAAGATGCCCATG...GAGTGCAGGTGATCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | CCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGACAGGTTCTCTTTTGTTaGCATCCACTCATCCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: PGIPAGGSTCESRAALVRQVLFC*HPLIQS Trigger: AGACTGGATGAGTGGATGCCAACAAAAGAGAACCTG...TCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | CAAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTGTTCTCTGTCTGTCTaGCTTCATCTTCAGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: QTYPGIPAGGSTCESRAACSLSV*LHLQLP Trigger: TGGTAACTGAAGATGAAGTCAGACAGACAGAGAACA...GGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR GCA 90 bp | CCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGATCAGTTTTCCCAACATaGTTAACTTCGATCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: PGIPAGGSTCESRAALVRSVFPT*LTSIFS Trigger: GGAGAAGATCGAAGTTAAGCATGTTGGGAAAACTGA...TCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | GGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACCTGGGGTTAAGATTGTaGACCGCTGACACTTCATAC | + |
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Preference number: 4 (lower is better) Translates to: GRRRMDLLKVCICRAGTNLGLRL*TADTSY Trigger: GTATGAAGTGTCAGCGGTCCACAATCTTAACCCCAG...GTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACCGATTCTGTGTAACTTaGCTATTCTCTCGGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GRRRMDLLKVCICRAGTNRFCVT*LFSRGS Trigger: AGAACCCCGAGAGAATAGTCAAGTTACACAGAATCG...GTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | CAGTGTATTTTCCCATGTGTCTATCCATGGGGAGGAGGCGCATGGACCTCCTTAGGTAAAGACAGGCCCTaGAATCTGCGAATGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: QCIFPCVYPWGGGAWTSLGKDRP*NLRMRF Trigger: GAACCTCATTCGCAGATTTCAGGGCCTGTCTTTACC...TAAGGAGGTCCATGCGCCTCCTCCCCATGGATAGACACATGGGAAAATACACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR GCA 90 bp | AAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTGGGGTTAACGATAACTaGCTGCTTTTCTCTCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: KLIQVSLRAAAPVRVEQPGVNDN*LLFSLL Trigger: TAACAGAGAGAAAAGCAGGCAGTTATCGTTAACCCC...AGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR GCA 90 bp | AGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACACATAACTGTGCTCTCAAGTaGGTGGGTAAAGACAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RRMDLLKVCICRAGTNTHNCALK*VGKDRP Trigger: GGGCCTGTCTTTACCCACGCACTTGAGAGCACAGTT...ATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | GCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTGGTAAGATCACCTGCACTCCTTATTCACTTCTTTTaGGTCAGGGTCTTTGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: AGGSTCESRAALVRSPALLIHFF*VRVFES Trigger: ACTTTCAAAGACCCTGACCCAAAAGAAGTGAATAAG...GAGTGCAGGTGATCTTACCAAGGCTGCTCTACTCTCACAGGTGCTGCCGCCCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | AGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACACATCACAGCCCAGCATCATaGCACAAGAACGCCAATACG | + |
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Preference number: 4 (lower is better) Translates to: RRMDLLKVCICRAGTNTHHSPAS*HKNANT Trigger: CGTATTGGCGTTCTTGTGCCATGATGCTGGGCTGTG...ATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGAGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACAACTGTAAGGGGTTaGGATGTTTTTATTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: GRRRMDLLKVCICRAGTNTTVRG*DVFIHH Trigger: GTGATGAATAAAAACATCTCAACCCCTTACAGTTGT...GTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCTCCTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CCA 90 bp | CAGTGTATTTTCCCATGTGTCTATCCATGGGGAGGAGGCGCATGGACCTCCTTAGCTGACACTTCATACTaGAAGCAAACACTTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: QCIFPCVYPWGGGAWTSLADTSY*KQTLVL Trigger: GAGAACAAGTGTTTGCTTCCAGTATGAAGTGTCAGC...TAAGGAGGTCCATGCGCCTCCTCCCCATGGATAGACACATGGGAAAATACACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR GCA 90 bp | GCAGCCTTGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACACTGTTCATCACGAAGACAGTaGCGGGATCAGTTTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: AALVRSPALSMVMKQKHCSSRRQ*RDQFSQ Trigger: TTGGGAAAACTGATCCCGGCACTGTCTTCGTGATGA...ACAGTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | AGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACACATTTGTACTTGTTATGTTaGAATATTTCCAGCGCCACT | + |
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Preference number: 4 (lower is better) Translates to: RRMDLLKVCICRAGTNTHLYLLC*NISSAT Trigger: AGTGGCGCTGGAAATATTTCAACATAACAAGTACAA...ATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR TCA 90 bp | GCAGCCTTGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACACTGTATGCCTTCTCCTCTATaGAATCCACTTTGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: AALVRSPALSMVMKQKHCMPSPL*NPLCTC Trigger: ACAAGTACAAAGTGGATTTCATAGAGGAGAAGGCAT...ACAGTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | CAAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCATACATGTCCCACGGTaGTCCGTCCACAAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: QTYPGIPAGGSTCESRAAIHVPR*SVHKSQ Trigger: CTGGCTCTTGTGGACGGACAACCGTGGGACATGTAT...GGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CCA 90 bp | GAGGCTTATACATGTCCCACGGTTGTCCGTCCACAAGAGCCAGGATaGACTTACTGCAGTACCACTCACTCAGATGCATGGCACAACTGT | + |
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Preference number: 5 (lower is better) Translates to: EAYTCPTVVRPQEPG*TYCSTTHSDAWHNC Trigger: ACAGTTGTGCCATGCATCTGAGTGAGTGGTACTGCAGTAAGTCCATCCTGGCTCTTGTGGACGGACAACCGTGGGACATGTATAAGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 90 bp | AACTTCCGGTGCTCTGACCAGGCTGACCACATAGTCATCTTTGAATaGCCTTTCGATTACACAGCCCAGCATCATGGCACAAGAACGCCA | + |
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Preference number: 5 (lower is better) Translates to: NFRCSDQADHIVIFE*PFDYTAQHHGTRTP Trigger: TGGCGTTCTTGTGCCATGATGCTGGGCTGTGTAATCGAAAGGGCATTCAAAGATGACTATGTGGTCAGCCTGGTCAGAGCACCGGAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 90 bp | AGTGACATCATAGCAGAAGGCCCCAGCAATCACAGGAACTTCCGGTaGTCTGACCAGGCTGACCACATAGTCATCTTTGAATGCCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SDIIAEGPSNHRNFR*SDQADHIVIFECPF Trigger: GAAAGGGCATTCAAAGATGACTATGTGGTCAGCCTGGTCAGAGCACCGGAAGTTCCTGTGATTGCTGGGGCCTTCTGCTATGATGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS TCA 90 bp | CATATTGTAAACTGTGCTCTCAAGTGCGTGGGTAAAGACAGGCCCTaGAATCTGCGAATGAGGTTCGGCTGGCTGGGGTTAAGATTGTGG | + |
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Preference number: 5 (lower is better) Translates to: HIVNCALKCVGKDRP*NLRMRFGWLGLRLW Trigger: CCACAATCTTAACCCCAGCCAGCCGAACCTCATTCGCAGATTTCAGGGCCTGTCTTTACCCACGCACTTGAGAGCACAGTTTACAATATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | CAAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCCACAACTGTAAGGGGTaGAGATGTTTTTATTCATCA | + |
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Preference number: 5 (lower is better) Translates to: QTYPGIPAGGSTCESRAAHNCKG*RCFYSS Trigger: TGATGAATAAAAACATCTCAACCCCTTACAGTTGTG...GGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | AGGCGCATGGACCTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACACATGCAGGTTCTCTTTTGTaGGCATCCACTCATCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: RRMDLLKVCICRAGTNTHAGSLL*ASTHPV Trigger: GACTGGATGAGTGGATGCCAACAAAAGAGAACCTGC...ATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAGGTCCATGCGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | CAAACTTATCCAGGTATCCCTGCGGGCGGCAGCACCTGTGAGAGTAGAGCAGCCTTTGTACTTGTTATGTaGAAATATTTCCAGCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QTYPGIPAGGSTCESRAAFVLVM*KYFQRH Trigger: GTGGCGCTGGAAATATTTCAACATAACAAGTACAAA...GGCTGCTCTACTCTCACAGGTGCTGCCGCCCGCAGGGATACCTGGATAAGTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS TCA 90 bp | GGTTCTCTTTTGTTGGCATCCACTCATCCAGTCTCTTATCCAAAGTaGCATCATAGCAGAAGGCCCCAGCAATCACAGGAACTTCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: GSLLLASTHPVSYPK*HHSRRPQQSQELPV Trigger: CACCGGAAGTTCCTGTGATTGCTGGGGCCTTCTGCTATGATGTCACTTTGGATAAGAGACTGGATGAGTGGATGCCAACAAAAGAGAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | GCAGCCTTGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACACTGTTGGCTGGGGTTAAGATaGTGGACCGCTGACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: AALVRSPALSMVMKQKHCWLGLR*WTADTS Trigger: TGAAGTGTCAGCGGTCCACAATCTTAACCCCAGCCA...ACAGTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CCA 90 bp | CAAGAGCCAGGATGGACTTACTGCAGTACCACTCACTCAGATGCATaGCACAACTGTAAGGGGTTGAGATGTTTTTATTCATCACGAAGA | + |
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Preference number: 5 (lower is better) Translates to: QEPGWTYCSTTHSDA*HNCKGLRCFYSSRR Trigger: TCTTCGTGATGAATAAAAACATCTCAACCCCTTACAGTTGTGCCATGCATCTGAGTGAGTGGTACTGCAGTAAGTCCATCCTGGCTCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | GCAGCCTTGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACACTGTTTGATCTCACAAGACTaGGTCAGAGGCTTATACATG | + |
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Preference number: 5 (lower is better) Translates to: AALVRSPALSMVMKQKHCLISQD*VRGLYM Trigger: CATGTATAAGCCTCTGACCAAGTCTTGTGAGATCAA...ACAGTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | CTCCTTAAAGTCTGTATCTGCAGAGCAGGGACAAACACACATTGTATTAAAAGCAACGCAGGTTCTCTTTaGTTGGCATCCACTCATCCA | + |
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Preference number: 5 (lower is better) Translates to: LLKVCICRAGTNTHCIKSNAGSL*LASTHP Trigger: TGGATGAGTGGATGCCAACAAAAGAGAACCTGCGTT...GCTTTTAATACAATGTGTGTTTGTCCCTGCTCTGCAGATACAGACTTTAAGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS-3UTR CAA 90 bp | GCAGCCTTGGTAAGATCACCTGCACTCTCTATGGTGATGAAACAGAAACACTGTTTTGGGTCAGGGTCTTaGAAAGTAAGAAATTTGATC | + |
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Preference number: 5 (lower is better) Translates to: AALVRSPALSMVMKQKHCFGSGS*KVRNLI Trigger: GATCAAATTTCTTACTTTCAAAGACCCTGACCCAAA...ACAGTGTTTCTGTTTCATCACCATAGAGAGTGCAGGTGATCTTACCAAGGCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS TCA 72 bp | AACTGTGCTCTCAAGTGCGTGGGTAAAGACAGGCCCTaGAATCTGCGAATGAGGTTCGGCTGGCTGGGGTTA | + |
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Preference number: 6 (lower is better) Translates to: NCALKCVGKDRP*NLRMRFGWLGL Trigger: TAACCCCAGCCAGCCGAACCTCATTCGCAGATTTCAGGGCCTGTCTTTACCCACGCACTTGAGAGCACAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 72 bp | ACGGTTGTCCGTCCACAAGAGCCAGGATGGACTTACTaGAGTACCACTCACTCAGATGCATGGCACAACTGT | + |
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Preference number: 6 (lower is better) Translates to: TVVRPQEPGWTY*STTHSDAWHNC Trigger: ACAGTTGTGCCATGCATCTGAGTGAGTGGTACTGCAGTAAGTCCATCCTGGCTCTTGTGGACGGACAACCGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 72 bp | ATAGCAGAAGGCCCCAGCAATCACAGGAACTTCCGGTaGTCTGACCAGGCTGACCACATAGTCATCTTTGAA | + |
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Preference number: 6 (lower is better) Translates to: IAEGPSNHRNFR*SDQADHIVIFE Trigger: TTCAAAGATGACTATGTGGTCAGCCTGGTCAGAGCACCGGAAGTTCCTGTGATTGCTGGGGCCTTCTGCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 72 bp | ACAAGACTTGGTCAGAGGCTTATACATGTCCCACGGTaGTCCGTCCACAAGAGCCAGGATGGACTTACTGCA | + |
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Preference number: 6 (lower is better) Translates to: TRLGQRLIHVPR*SVHKSQDGLTA Trigger: TGCAGTAAGTCCATCCTGGCTCTTGTGGACGGACAACCGTGGGACATGTATAAGCCTCTGACCAAGTCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 90 bp | TTTGATCTCACAAGACTTGGTCAGAGGCTTATACATGTCCCACGGTaGTCCGTCCACAAGAGCCAGGATGGACTTACTGCAGTACCACTC | + |
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Preference number: 6 (lower is better) Translates to: FDLTRLGQRLIHVPR*SVHKSQDGLTAVPL Trigger: GAGTGGTACTGCAGTAAGTCCATCCTGGCTCTTGTGGACGGACAACCGTGGGACATGTATAAGCCTCTGACCAAGTCTTGTGAGATCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 72 bp | TGCTCTGACCAGGCTGACCACATAGTCATCTTTGAATaGCCTTTCGATTACACAGCCCAGCATCATGGCACA | + |
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Preference number: 6 (lower is better) Translates to: CSDQADHIVIFE*PFDYTAQHHGT Trigger: TGTGCCATGATGCTGGGCTGTGTAATCGAAAGGGCATTCAAAGATGACTATGTGGTCAGCCTGGTCAGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CCA 72 bp | CTGGGGTTAAGATTGTGGACCGCTGACACTTCATACTaGAAGCAAACACTTGTTCTCGGAATAAGGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: LGLRLWTADTSY*KQTLVLGIRGP Trigger: AGGCCCCCTTATTCCGAGAACAAGTGTTTGCTTCCAGTATGAAGTGTCAGCGGTCCACAATCTTAACCCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS TCA 72 bp | TTGTTGGCATCCACTCATCCAGTCTCTTATCCAAAGTaGCATCATAGCAGAAGGCCCCAGCAATCACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LLASTHPVSYPK*HHSRRPQQSQE Trigger: TTCCTGTGATTGCTGGGGCCTTCTGCTATGATGTCACTTTGGATAAGAGACTGGATGAGTGGATGCCAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 72 bp | ACCACTCACTCAGATGCATGGCACAACTGTAAGGGGTaGAGATGTTTTTATTCATCACGAAGACAGTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: TTHSDAWHNCKG*RCFYSSRRQCR Trigger: CCGGCACTGTCTTCGTGATGAATAAAAACATCTCAACCCCTTACAGTTGTGCCATGCATCTGAGTGAGTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 90 bp | TACTGCAGTACCACTCACTCAGATGCATGGCACAACTGTAAGGGGTaGAGATGTTTTTATTCATCACGAAGACAGTGCCGGGATCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: YCSTTHSDAWHNCKG*RCFYSSRRQCRDQF Trigger: AAACTGATCCCGGCACTGTCTTCGTGATGAATAAAAACATCTCAACCCCTTACAGTTGTGCCATGCATCTGAGTGAGTGGTACTGCAGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 90 bp | TTTGGGTCAGGGTCTTTGAAAGTAAGAAATTTGATCTCACAAGACTaGGTCAGAGGCTTATACATGTCCCACGGTTGTCCGTCCACAAGA | + |
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Preference number: 6 (lower is better) Translates to: FGSGSLKVRNLISQD*VRGLYMSHGCPSTR Trigger: TCTTGTGGACGGACAACCGTGGGACATGTATAAGCCTCTGACCAAGTCTTGTGAGATCAAATTTCTTACTTTCAAAGACCCTGACCCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS GCA 72 bp | GTACTTGTTATGTTGAAATATTTCCAGCGCCACTCTTaGATCAACGTCCAGAGTTTCAAAGGGAAGGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: VLVMLKYFQRHS*INVQSFKGKVP Trigger: AGGGACCTTCCCTTTGAAACTCTGGACGTTGATGCAAGAGTGGCGCTGGAAATATTTCAACATAACAAGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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| CDS CAA 72 bp | GGGTCTTTGAAAGTAAGAAATTTGATCTCACAAGACTaGGTCAGAGGCTTATACATGTCCCACGGTTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: GSLKVRNLISQD*VRGLYMSHGCP Trigger: CGGACAACCGTGGGACATGTATAAGCCTCTGACCAAGTCTTGTGAGATCAAATTTCTTACTTTCAAAGACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116584.2 |
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