Pregenerated sensors for MRPL38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020775Ensembl transcript IDs: ENSMUST00000106439.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTaGCCTTCCAGCTGCTGCGACAGTTCCCCCTCGGAGATGAATGTA | + |
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Preference number: 1 (lower is better) Translates to: HGTVSVGFRWLSPEV*PSSCCDSSPSEMNV Trigger: TACATTCATCTCCGAGGGGGAACTGTCGCAGCAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| 3UTR TCA 72 bp | GTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTaGCCTTCCAGCTGCTGCGACAGTTCCCCCTCGGAG | + |
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Preference number: 3 (lower is better) Translates to: VSVGFRWLSPEV*PSSCCDSSPSE Trigger: CTCCGAGGGGGAACTGTCGCAGCAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| 3UTR CCA 72 bp | GTGTCCTGGGAGAGGCCAGCATGGGACTGTCTCAGTTaGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTC | + |
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Preference number: 3 (lower is better) Translates to: VSWERPAWDCLS*LQMALSGGVTF Trigger: GAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAGGACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | CTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGCGTCCTCTCCCACTCTaGCCGCACTGCCTCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LGEASMGLSQLASDGSLRRPLPL*PHCLQW Trigger: CCACTGGAGGCAGTGCGGGCAGAGTGGGAGAGGACG...CCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | GCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACTGTCCTCGTTGGGCATaGGCCCGAGCGGGGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: ASMGLSQLASDGSLRRCDCPRWA*ARAGVS Trigger: GGACACCCCCGCTCGGGCCCATGCCCAACGAGGACA...GTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR TCA 90 bp | AGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGGGAAGGCCGAGGTGCTaGAGCCCCGGCATCTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: RGQHGTVSVGFRWLSPEVGRPRC*SPGISQ Trigger: TTGGGAGATGCCGGGGCTTCAGCACCTCGGCCTTCC...CACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR TCA 90 bp | CTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGGGTGGAAGGTGTGGGTaGCAGAGTCATCCCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: LGEASMGLSQLASDGSLRGGRCG*QSHPSG Trigger: GCCGCTGGGATGACTCTGTCACCCACACCTTCCACC...CCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | GAATCGAGGCACATCCACAAGCCCCTGGGTGTCCTGGGAGAGGCCAGCATGGGACCCAGGGCACAAAAGTaGCACCGTGGAACAGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: ESRHIHKPLGVLGEASMGPRAQK*HRGTGL Trigger: GAGACCTGTTCCACGGTGCCACTTTTGTGCCCTGGG...TCCCATGCTGGCCTCTCCCAGGACACCCAGGGGCTTGTGGATGTGCCTCGATTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGCTCATAGGTCACCTCTaGGGCCCGGGAAGCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: RGQHGTVSVGFRWLSPEVLIGHL*GPGSLG Trigger: ACCGAGGCTTCCCGGGCCCCAGAGGTGACCTATGAG...CACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | GTGTCCTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCCCAGCCGCTCCAGGTTaGTCACGTCGATGTCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: VSWERPAWDCLSWLQMALPAAPG*SRRCPR Trigger: ACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGG...GAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAGGACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | AGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGCGTGCGGAGGCGGGCTaGCCGTTCTTCTTCCACATT | + |
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Preference number: 4 (lower is better) Translates to: RGQHGTVSVGFRWLSPEVRAEAG*PFFFHI Trigger: AATGTGGAAGAAGAACGGGCAGCCCGCCTCCGCACG...CACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | CCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCGGAAGCGCTTCTGTTTaGGGTGGTAAGGGGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PAWDCLSWLQMALSGGVTGSASV*GGKGVA Trigger: GGCCACCCCCTTACCACCCCAAACAGAAGCGCTTCC...GGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGCGTAGGGGCTGCTCGTaGGGGAAGCGCTTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: RGQHGTVSVGFRWLSPEVRRGCS*GKRFCL Trigger: CAAACAGAAGCGCTTCCCCCACGAGCAGCCCCTACG...CACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AATCGAGGCACATCCACAAGCCCCTGGGTGTCCTGGGAGAGGCCAGCATGGGACGGGGTGGTAAGGGGGTaGCCGTACAAATTCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: NRGTSTSPWVSWERPAWDGVVRG*PYKFKH Trigger: GTGTTTGAATTTGTACGGCCACCCCCTTACCACCCC...GTCCCATGCTGGCCTCTCCCAGGACACCCAGGGGCTTGTGGATGTGCCTCGATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | CTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGCAAGGAATCCTTGTCTaGCTCATAGGTCACCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LGEASMGLSQLASDGSLRQGILV*LIGHLW Trigger: CCAGAGGTGACCTATGAGGCAGACAAGGATTCCTTG...CCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | GACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTCCAGCTGAGCTGGTGGAAGGTGTaGGTGACAGAGTCATCCCAG | + |
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Preference number: 4 (lower is better) Translates to: DCLSWLQMALSGGVTFQLSWWKV*VTESSQ Trigger: CTGGGATGACTCTGTCACCCACACCTTCCACCAGCT...CAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGCGCATGTCTAGAAGCTaGTGGAAGGTGTGGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: RPAWDCLSWLQMALSGGVRMSRS*WKVWVT Trigger: TGTCACCCACACCTTCCACCAGCTTCTAGACATGCG...CACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | ATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTCCAGACCGGCTGGAGTCATaGCTTCCTGGTGTCTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: MGLSQLASDGSLRRCDLPDRLES*LPGVSC Trigger: ACAAGAGACACCAGGAAGCCATGACTCCAGCCGGTC...TGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTAAAAGCCAGACCGGCTaGAGTCATGGCTTCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SMGLSQLASDGSLRRCDLKSQTG*SHGFLV Trigger: CACCAGGAAGCCATGACTCCAGCCGGTCTGGCTTTT...AAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | CTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTCCAGCTGCTGCGATGTAGAAATCAAAAGTaGGGAAGGTCCTCTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LSWLQMALSGGVTFQLLRCRNQK*GRSSGP Trigger: TGGCCCAGAGGACCTTCCGCACTTTTGATTTCTACA...TCGCAGCAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | AGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGGTTCTTCTTCCACATTaGCACGAAGTTCCCGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: RPAWDCLSWLQMALSGGVVLLPH*HEVPAE Trigger: TTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAAC...CACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | CTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGTGTTGCTTGGGATGTTaGTTAGCAGCCAGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: LGEASMGLSQLASDGSLRCCLGC*LAASEH Trigger: ATGTTCACTGGCTGCTAACCAACATCCCAAGCAACA...CCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | CTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTCCAGCTGCTGCGAAGTAGATTCCATAGGTaGGCTCATGACTGTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LSWLQMALSGGVTFQLLRSRFHR*AHDCPC Trigger: ACAGGGACAGTCATGAGCCCACCTATGGAATCTACT...TCGCAGCAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | TGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGACCTTCCAGCTGCTGCTTCAGCCACTCTGTTaGTTGGGATGTTGGTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: CLSWLQMALSGGVTFQLLLQPLC*LGCWLA Trigger: TGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAG...CAGCAGCTGGAAGGTCACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR GCA 90 bp | AGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGTTGATTGGCTTGTCCTaGTTGAAGAGCAAGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RPAWDCLSWLQMALSGGVLIGLS*LKSKKA Trigger: TGCCTTCTTGCTCTTCAAGCAGGACAAGCCAATCAA...CACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CCA 90 bp | GTGTCCTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTGTCAATTTTGTCTTTaGGATCTGTCTCCTTCACGA | + |
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Preference number: 4 (lower is better) Translates to: VSWERPAWDCLSWLQMALCQFCL*DLSPSR Trigger: TCGTGAAGGAGACAGATCCCAAAGACAAAATTGACA...GAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAGGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 90 bp | GGCGGTACCGCTCGAAGCTCCGGTACTTCTCCAGCCGCTCCAGGTTaGTCACGTCGATGTCCTCGTTGGGCATGGGCCCGAGCGGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: GGTARSSGTSPAAPG*SRRCPRWAWARAGV Trigger: CACCCCCGCTCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGAGAAGTACCGGAGCTTCGAGCGGTACCGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 90 bp | TGCCCGCACTGCCTCCAGTGGGATGCTAGCCGTGCGGAGGCGGGCTaGCCGTTCTTCTTCCACATTGGCACGAAGTTCCCGCAGAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: CPHCLQWDASRAEAG*PFFFHIGTKFPQKV Trigger: CACTTTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAACGGGCAGCCCGCCTCCGCACGGCTAGCATCCCACTGGAGGCAGTGCGGGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 90 bp | CTCCCACGGCGTAAGCCACGTGTAGAGGGACCCAGGGCACAAAAGTaGCACCGTGGAACAGGTCTCGGTAGAGGCCATAGTACTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LPRRKPRVEGPRAQK*HRGTGLGRGHSTQP Trigger: TGGCTGAGTACTATGGCCTCTACCGAGACCTGTTCCACGGTGCCACTTTTGTGCCCTGGGTCCCTCTACACGTGGCTTACGCCGTGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | TGTCCTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTTCCAGCCGCTCCAGGTaGCTCACGTCGATGTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: CPGRGQHGTVSVGFRWLSSSRSR*LTSMSS Trigger: CGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGA...AGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 90 bp | CGGCTGGAGTCATGGCTTCCTGGTGTCTCTTGTAGAAATCAAAAGTaGGGAAGGTCCTCTGGGCCAGCTGGTAGCAGGGTGAGGGACGGG | + |
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Preference number: 5 (lower is better) Translates to: RLESWLPGVSCRNQK*GRSSGPAGSRVRDG Trigger: CCCGTCCCTCACCCTGCTACCAGCTGGCCCAGAGGACCTTCCGCACTTTTGATTTCTACAAGAGACACCAGGAAGCCATGACTCCAGCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 90 bp | GCTGCCCGTTCTTCTTCCACATTGGCACGAAGTTCCCGCAGAAAGTaGTTCCGCTCCAGTAGCTTTTGGGTCCGACTGACTCTGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: AARSSSTLARSSRRK*FRSSSFWVRLTLGG Trigger: CCCACCCAGAGTCAGTCGGACCCAAAAGCTACTGGAGCGGAAGCACTTTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAACGGGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | AGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGCAGCCACTCTGTTGCTaGGGATGTTGGTTAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: RGQHGTVSVGFRWLSPEVQPLCC*GCWLAA Trigger: GGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTG...CACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 90 bp | CAGGGTGAGGGACGGGTGTCCTCTGAGAAGTTGATTGGCTTGTCCTaGTTGAAGAGCAAGAAGGCAAAGCGGTGGAAGCCAGAGCCTCGA | + |
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Preference number: 5 (lower is better) Translates to: QGEGRVSSEKLIGLS*LKSKKAKRWKPEPR Trigger: TCGAGGCTCTGGCTTCCACCGCTTTGCCTTCTTGCTCTTCAAGCAGGACAAGCCAATCAACTTCTCAGAGGACACCCGTCCCTCACCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | AGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGCGTTCTTCTTCCACATaGGCACGAAGTTCCCGCAGA | + |
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Preference number: 5 (lower is better) Translates to: RPAWDCLSWLQMALSGGVRSSST*ARSSRR Trigger: TCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAACG...CACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | AATCGAGGCACATCCACAAGCCCCTGGGTGTCCTGGGAGAGGCCAGCATGGGACGAGAAGTTGATTGGCTaGTCCTGCTTGAAGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: NRGTSTSPWVSWERPAWDEKLIG*SCLKSK Trigger: CTTGCTCTTCAAGCAGGACAAGCCAATCAACTTCTC...GTCCCATGCTGGCCTCTCCCAGGACACCCAGGGGCTTGTGGATGTGCCTCGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | GTGTCCTGGGAGAGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCATTGGCTTGTCCTGCTaGAAGAGCAAGAAGGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: VSWERPAWDCLSWLQMALIGLSC*KSKKAK Trigger: CTTTGCCTTCTTGCTCTTCAAGCAGGACAAGCCAAT...GAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCTCTCCCAGGACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS-3UTR CAA 90 bp | AGGCCAGCATGGGACTGTCTCAGTTGGCTTCAGATGGCTCTCTCCGGAGGTGTGAGCCCAATGTCAATTTaGTCTTTGGGATCTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: RPAWDCLSWLQMALSGGVSPMSI*SLGSVS Trigger: GGAGACAGATCCCAAAGACAAAATTGACATTGGGCT...CACACCTCCGGAGAGAGCCATCTGAAGCCAACTGAGACAGTCCCATGCTGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 72 bp | TCCAGCCGCTCCAGGTTGCTCACGTCGATGTCCTCGTaGGGCATGGGCCCGAGCGGGGGTGTCCGGCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SSRSRLLTSMSS*GMGPSGGVRRL Trigger: CAGCCGCCGGACACCCCCGCTCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 90 bp | CGGTACTTCTCCAGCCGCTCCAGGTTGCTCACGTCGATGTCCTCGTaGGGCATGGGCCCGAGCGGGGGTGTCCGGCGGCTGAGGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: RYFSSRSRLLTSMSS*GMGPSGGVRRLRKA Trigger: GGCCTTCCTCAGCCGCCGGACACCCCCGCTCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGAGAAGTACCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 90 bp | CGGCGGTACCGCTCGAAGCTCCGGTACTTCTCCAGCCGCTCCAGGTaGCTCACGTCGATGTCCTCGTTGGGCATGGGCCCGAGCGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: RRYRSKLRYFSSRSR*LTSMSSLGMGPSGG Trigger: ACCCCCGCTCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGAGAAGTACCGGAGCTTCGAGCGGTACCGCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 72 bp | CGCTCGAAGCTCCGGTACTTCTCCAGCCGCTCCAGGTaGCTCACGTCGATGTCCTCGTTGGGCATGGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: RSKLRYFSSRSR*LTSMSSLGMGP Trigger: CGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGAGAAGTACCGGAGCTTCGAGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 72 bp | GCTCGAAGCTCCGGTACTTCTCCAGCCGCTCCAGGTTaGTCACGTCGATGTCCTCGTTGGGCATGGGCCCGA | + |
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Preference number: 6 (lower is better) Translates to: ARSSGTSPAAPG*SRRCPRWAWAR Trigger: TCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCGGCTGGAGAAGTACCGGAGCTTCGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | CCGTGCGGAGGCGGGCTGCCCGTTCTTCTTCCACATTaGCACGAAGTTCCCGCAGAAAGTGCTTCCGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PCGGGLPVLLPH*HEVPAESASAP Trigger: TGGAGCGGAAGCACTTTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAACGGGCAGCCCGCCTCCGCACGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 90 bp | GGGATGCTAGCCGTGCGGAGGCGGGCTGCCCGTTCTTCTTCCACATaGGCACGAAGTTCCCGCAGAAAGTGCTTCCGCTCCAGTAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GMLAVRRRAARSSST*ARSSRRKCFRSSSF Trigger: AAAGCTACTGGAGCGGAAGCACTTTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGAACGGGCAGCCCGCCTCCGCACGGCTAGCATCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS TCA 72 bp | GCCACTCTGTTGCTTGGGATGTTGGTTAGCAGCCAGTaGACATACTCAGCGTCCGGCTCCAGCAGGTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: ATLLLGMLVSSQ*TYSASGSSRCP Trigger: CGGACACCTGCTGGAGCCGGACGCTGAGTATGTTCACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | CGTAAGCCACGTGTAGAGGGACCCAGGGCACAAAAGTaGCACCGTGGAACAGGTCTCGGTAGAGGCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: RKPRVEGPRAQK*HRGTGLGRGHS Trigger: ACTATGGCCTCTACCGAGACCTGTTCCACGGTGCCACTTTTGTGCCCTGGGTCCCTCTACACGTGGCTTACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | CCACAAGGAATCCTTGTCTGCCTCATAGGTCACCTCTaGGGCCCGGGAAGCCTCGGTCGGAGTCACTTCATT | + |
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Preference number: 6 (lower is better) Translates to: PQGILVCLIGHL*GPGSLGRSHFI Trigger: AATGAAGTGACTCCGACCGAGGCTTCCCGGGCCCCAGAGGTGACCTATGAGGCAGACAAGGATTCCTTGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 90 bp | GAGGGAGGTAGGGACATGTCTCCTGTCCTTCAGCCACTCTGTTGCTaGGGATGTTGGTTAGCAGCCAGTGAACATACTCAGCGTCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: EGGRDMSPVLQPLCC*GCWLAASEHTQRPA Trigger: AGCCGGACGCTGAGTATGTTCACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAGGACAGGAGACATGTCCCTACCTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 72 bp | TCATGGCTTCCTGGTGTCTCTTGTAGAAATCAAAAGTaGGGAAGGTCCTCTGGGCCAGCTGGTAGCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: SWLPGVSCRNQK*GRSSGPAGSRV Trigger: CACCCTGCTACCAGCTGGCCCAGAGGACCTTCCGCACTTTTGATTTCTACAAGAGACACCAGGAAGCCATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | TCTCCTGTCCTTCAGCCACTCTGTTGCTTGGGATGTTaGTTAGCAGCCAGTGAACATACTCAGCGTCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: SPVLQPLCCLGC*LAASEHTQRPA Trigger: AGCCGGACGCTGAGTATGTTCACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAGGACAGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | AATTCAAACACAGGTTCCCGCATGTCTAGAAGCTGGTaGAAGGTGTGGGTGACAGAGTCATCCCAGCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: NSNTGSRMSRSW*KVWVTESSQRH Trigger: GTGCCGCTGGGATGACTCTGTCACCCACACCTTCCACCAGCTTCTAGACATGCGGGAACCTGTGTTTGAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 72 bp | TCTTCTTCCACATTGGCACGAAGTTCCCGCAGAAAGTaGTTCCGCTCCAGTAGCTTTTGGGTCCGACTGACT | + |
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Preference number: 6 (lower is better) Translates to: SSSTLARSSRRK*FRSSSFWVRLT Trigger: AGTCAGTCGGACCCAAAAGCTACTGGAGCGGAAGCACTTTCTGCGGGAACTTCGTGCCAATGTGGAAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CCA 72 bp | CTCTGGGTGGGGGTAGCCCAATGTCAATTTTGTCTTTaGGATCTGTCTCCTTCACGAAATGCTCCCGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: LWVGVAQCQFCL*DLSPSRNAPGR Trigger: CCTACCGGGAGCATTTCGTGAAGGAGACAGATCCCAAAGACAAAATTGACATTGGGCTACCCCCACCCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS GCA 72 bp | GGTAGGGACATGTCTCCTGTCCTTCAGCCACTCTGTTaGTTGGGATGTTGGTTAGCAGCCAGTGAACATACT | + |
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Preference number: 6 (lower is better) Translates to: GRDMSPVLQPLC*LGCWLAASEHT Trigger: AGTATGTTCACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAGGACAGGAGACATGTCCCTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 72 bp | CGACTGACTCTGGGTGGGGGTAGCCCAATGTCAATTTaGTCTTTGGGATCTGTCTCCTTCACGAAATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RLTLGGGSPMSI*SLGSVSFTKCS Trigger: GGAGCATTTCGTGAAGGAGACAGATCCCAAAGACAAAATTGACATTGGGCTACCCCCACCCAGAGTCAGTCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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| CDS CAA 72 bp | AGGGACATGTCTCCTGTCCTTCAGCCACTCTGTTGCTaGGGATGTTGGTTAGCAGCCAGTGAACATACTCAG | + |
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Preference number: 6 (lower is better) Translates to: RDMSPVLQPLCC*GCWLAASEHTQ Trigger: CTGAGTATGTTCACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAGGACAGGAGACATGTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106439.2 |
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