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Pregenerated sensors for MRPL36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021607

Ensembl transcript IDs: ENSMUST00000022098.10, ENSMUST00000222030.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCGAGCCAGACTTTGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTaGTTCATACACAGCTACTGTAACAATCCTTCTCCATCGGCAGCT +
Preference number: 1 (lower is better)
Translates to: PSQTLSQEIKLALYS*FIHSYCNNPSPSAA
Trigger: AGCTGCCGATGGAGAAGGATTGTTACAGTAGCTGTGTATGAAGCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR CCA 90 bp GGCAGCCTCTTAAAGCACTTACAATCTGCTGCATATGGTAACAAATaGCAGAGGCAGGAGTTTCTCTCCAAGTTTCAGGTCAACCAGGGT +
Preference number: 1 (lower is better)
Translates to: GSLLKHLQSAAYGNK*QRQEFLSKFQVNQG
Trigger: ACCCTGGTTGACCTGAAACTTGGAGAGAAACTCCTGCCTCTGCCATTTGTTACCATATGCAGCAGATTGTAAGTGCTTTAAGAGGCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022098.10
3UTR-3UTR GCA 90 bp GCAGAGGCAGGAGTTTCTCTCCAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGCTGGCTCTGTATTCCTaGTTCATACACAGCTACTGT +
Preference number: 2 (lower is better)
Translates to: AEAGVSLQVSGQPGLPSQLALYS*FIHSYC
Trigger: ACAGTAGCTGTGTATGAAGCAGGAATACAGAGCCAG...CTGGCTCGGTAACCCTGGTTGACCTGAAACTTGGAGAGAAACTCCTGCCTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR-3UTR CCA 90 bp GCAGAGGCAGGAGTTTCTCTCCAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGGAAATGAATTTTCCATaGACACTGCTTGAAGACAAG +
Preference number: 2 (lower is better)
Translates to: AEAGVSLQVSGQPGLPSQEMNFP*TLLEDK
Trigger: CTTGTCTTCAAGCAGTGTCCATGGAAAATTCATTTC...CTGGCTCGGTAACCCTGGTTGACCTGAAACTTGGAGAGAAACTCCTGCCTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR CAA 90 bp GTTTCTCTCCAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGACTTaGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTGCTTCATACAC +
Preference number: 2 (lower is better)
Translates to: VSLQVSGQPGLPSQT*SQEIKLALYSCFIH
Trigger: GTGTATGAAGCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTCGGTAACCCTGGTTGACCTGAAACTTGGAGAGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR-3UTR CCA 90 bp CAGAGGCAGGAGTTTCTCTCCAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGAGAAATGAATTTTCCATaGACACTGCTTGAAGACAAG +
Preference number: 2 (lower is better)
Translates to: QRQEFLSKFQVNQGYRAREMNFP*TLLEDK
Trigger: CTTGTCTTCAAGCAGTGTCCATGGAAAATTCATTTC...TCTGGCTCGGTAACCCTGGTTGACCTGAAACTTGGAGAGAAACTCCTGCCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR-3UTR TCA 90 bp AGCACTTACAATCTGCTGCATATGGTAACAAATGGCAGAGGCAGGAGTTTCTCTTCTGATAAGGTGAAATaGATTTTCCATGGACACTGC +
Preference number: 2 (lower is better)
Translates to: STYNLLHMVTNGRGRSFSSDKVK*IFHGHC
Trigger: GCAGTGTCCATGGAAAATTCATTTCACCTTATCAGA...AGAGAAACTCCTGCCTCTGCCATTTGTTACCATATGCAGCAGATTGTAAGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022098.10
3UTR-3UTR TCA 90 bp TTCAACAAAGCCCTAAGGCCCATGGATCTTACAGAATGCTTAATGTTTATTTTTTCTGATAAGGTGAAATaGATTTTCCATGGACACTGC +
Preference number: 2 (lower is better)
Translates to: FNKALRPMDLTECLMFIFSDKVK*IFHGHC
Trigger: GCAGTGTCCATGGAAAATTCATTTCACCTTATCAGA...AAAAATAAACATTAAGCATTCTGTAAGATCCATGGGCCTTAGGGCTTTGTTGAA
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
3UTR CAA 72 bp CAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGACTTaGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTGC +
Preference number: 4 (lower is better)
Translates to: QVSGQPGLPSQT*SQEIKLALYSC
Trigger: GCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTCGGTAACCCTGGTTGACCTGAAACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR GCA 90 bp GCAGGAGTTTCTCTCCAAGTTTCAGGTCAACCAGGGTTACCGAGCCAGACTTTGATTTGTCGCTGTTTATaGTTGGGGTTGGTCTTACAG +
Preference number: 4 (lower is better)
Translates to: AGVSLQVSGQPGLPSQTLICRCL*LGLVLQ
Trigger: CTGTAAGACCAACCCCAAGCATAAACAGCGACAAAT...CAAAGTCTGGCTCGGTAACCCTGGTTGACCTGAAACTTGGAGAGAAACTCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR GCA 90 bp GGGGTTCAACAAAGCCCTAAGGCCCATGGATCTTACAGAATGCTTAATGTTTATATTTGTCGCTGTTTATaGTTGGGGTTGGTCTTACAG +
Preference number: 4 (lower is better)
Translates to: GVQQSPKAHGSYRMLNVYICRCL*LGLVLQ
Trigger: CTGTAAGACCAACCCCAAGCATAAACAGCGACAAAT...ATAAACATTAAGCATTCTGTAAGATCCATGGGCCTTAGGGCTTTGTTGAACCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR CAA 90 bp CCGAGCCAGACTTTGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTGCTTCATATGTCGCTGTTTATGCTaGGGGTTGGTCTTACAGAGG +
Preference number: 5 (lower is better)
Translates to: PSQTLSQEIKLALYSCFICRCLC*GLVLQR
Trigger: CCTCTGTAAGACCAACCCCAAGCATAAACAGCGACA...TATGAAGCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR CAA 90 bp AGGTCAACCAGGGTTACCGAGCCAGACTTTGTCTCAAGAGATAAAGCTGGCTCTTGTTTATGCTTGGGGTaGGTCTTACAGAGGATAAAC +
Preference number: 5 (lower is better)
Translates to: RSTRVTEPDFVSRDKAGSCLCLG*VLQRIN
Trigger: GTTTATCCTCTGTAAGACCAACCCCAAGCATAAACA...AGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTCGGTAACCCTGGTTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR CAA 90 bp GAGCCAGACTTTGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTGCTTCATACATGTCGCTGTTTATGCTaGGGGTTGGTCTTACAGAGG +
Preference number: 5 (lower is better)
Translates to: EPDFVSRDKAGSVFLLHTCRCLC*GLVLQR
Trigger: CCTCTGTAAGACCAACCCCAAGCATAAACAGCGACA...TGTATGAAGCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2
CDS-3UTR CAA 90 bp GAGCCAGACTTTGTCTCAAGAGATAAAGCTGGCTCTGTATTCCTGCTTCATACATGTTTATGCTTGGGGTaGGTCTTACAGAGGATAAAC +
Preference number: 5 (lower is better)
Translates to: EPDFVSRDKAGSVFLLHTCLCLG*VLQRIN
Trigger: GTTTATCCTCTGTAAGACCAACCCCAAGCATAAACA...TGTATGAAGCAGGAATACAGAGCCAGCTTTATCTCTTGAGACAAAGTCTGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022098.10
ENSMUST00000222030.2